Wall clock time and date at job start Wed Apr 1 2020 03:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35990 * 117.00279 * 2 1 4 4 C 1.38566 * 120.07328 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.00231 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92843 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47247 * 89.99859 * 6 5 4 8 8 C 1.34777 * 120.00147 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00160 * 0.02562 * 8 7 6 10 10 C 1.47429 * 120.00013 * 179.97438 * 8 7 6 11 11 C 1.41293 * 126.41485 * 0.02562 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.71995 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50694 * 126.28562 * 180.22136 * 23 13 12 25 25 C 1.38249 * 120.14503 * 0.26865 * 5 4 3 26 26 C 1.38244 * 120.14480 * 359.45293 * 25 5 4 27 27 C 1.38562 * 120.00078 * 0.54991 * 26 25 5 28 28 O 1.35994 * 120.07395 * 179.70486 * 27 26 25 29 29 H 1.09003 * 109.46464 * 299.99567 * 1 2 3 30 30 H 1.09000 * 109.47336 * 59.99192 * 1 2 3 31 31 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99807 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47421 * 329.99782 * 6 5 4 34 34 H 1.08996 * 109.47445 * 209.99676 * 6 5 4 35 35 H 0.97008 * 120.00191 * 359.97438 * 7 6 5 36 36 H 1.07999 * 125.98923 * 359.95357 * 11 10 8 37 37 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 38 38 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47253 * 90.00157 * 24 23 13 41 41 H 1.09009 * 109.47074 * 210.00037 * 24 23 13 42 42 H 1.09002 * 109.47486 * 330.00194 * 24 23 13 43 43 H 1.08000 * 119.92623 * 179.70945 * 25 5 4 44 44 H 1.08001 * 120.00023 * 180.25366 * 26 25 5 45 45 H 0.96694 * 113.99925 * 270.01938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 1.1018 4.8696 0.0011 7 7 0.8353 5.2788 1.3823 8 6 0.1131 6.3898 1.6285 9 8 -0.3177 7.0523 0.7043 10 6 -0.1556 6.8013 3.0185 11 6 0.2759 6.1366 4.1883 12 7 -0.1561 6.8107 5.2182 13 7 -0.8819 7.9174 4.7634 14 6 -1.5335 8.9201 5.6095 15 6 -2.9485 8.4901 5.8991 16 1 -3.3247 7.5624 5.4937 17 6 -3.7610 9.2780 6.6867 18 7 -3.3028 10.4074 7.1806 19 14 -5.5125 8.7412 7.0518 20 1 -5.7818 7.4426 6.3837 21 1 -5.6878 8.5884 8.5186 22 1 -6.4603 9.7655 6.5441 23 6 -0.8753 7.9084 3.4208 24 6 -1.5333 8.9205 2.5189 25 6 3.3030 3.6798 -0.0045 26 6 4.0603 2.5232 0.0007 27 6 3.4360 1.2862 0.0001 28 8 4.1796 0.1476 -0.0008 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2147 2.3196 0.0005 33 1 0.1577 4.6898 -0.5132 34 1 1.6505 5.6591 -0.5123 35 1 1.1780 4.7497 2.1196 36 1 0.8638 5.2314 4.2237 37 1 -1.5439 9.8800 5.0931 38 1 -0.9845 9.0174 6.5461 39 1 -3.8746 10.9619 7.7344 40 1 -0.8306 9.7249 2.3019 41 1 -1.8320 8.4380 1.5882 42 1 -2.4134 9.3308 3.0142 43 1 3.7909 4.6433 -0.0088 44 1 5.1386 2.5839 0.0005 45 1 4.3946 -0.1810 -0.8844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417674131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:05 Heat of formation + Delta-G solvation = -48.864889 kcal Electronic energy + Delta-G solvation = -28806.369831 eV Core-core repulsion = 24596.882494 eV Total energy + Delta-G solvation = -4209.487337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.30433 -41.46149 -40.10431 -38.80443 -37.93197 -35.83758 -35.43784 -33.82208 -32.77142 -31.71359 -31.11739 -29.32153 -28.51641 -28.09204 -26.48539 -25.23777 -23.41929 -23.32541 -22.52054 -21.26354 -20.58333 -19.61640 -18.87770 -18.70910 -18.10460 -17.53312 -17.00297 -16.87676 -16.67224 -16.43058 -16.17417 -16.11811 -15.63318 -15.38848 -15.12226 -15.00206 -14.74379 -14.47856 -14.35030 -14.05153 -13.73782 -13.63415 -13.58583 -13.20803 -13.08775 -13.02543 -12.94164 -12.80053 -12.72667 -12.33393 -12.24140 -12.03581 -11.83769 -11.71462 -11.54354 -10.84265 -10.76897 -10.25730 -10.11054 -9.83170 -9.42995 -9.13524 -8.38483 -6.54786 0.05497 0.35619 0.69541 1.32857 1.35905 1.38750 1.49480 1.67416 2.24545 2.31700 2.34600 2.56197 2.77467 2.93699 3.24179 3.57960 3.75991 3.77966 3.85695 4.09365 4.15116 4.24075 4.27362 4.31811 4.36333 4.53116 4.59086 4.63980 4.67825 4.71445 4.74766 4.80408 4.88803 4.92188 5.09058 5.10598 5.17872 5.28562 5.47634 5.49978 5.52761 5.67953 5.69401 5.74551 6.05548 6.25868 6.54789 6.61866 6.85365 6.87853 7.16411 7.35991 8.69573 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.002046 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.699622 B =13679.620287 C =14241.769506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.084 3.916 4 C -0.176 4.176 5 C -0.075 4.075 6 C 0.168 3.832 7 N -0.712 5.712 8 C 0.607 3.393 9 O -0.580 6.580 10 C -0.330 4.330 11 C 0.079 3.921 12 N -0.338 5.338 13 N -0.339 5.339 14 C 0.267 3.733 15 C -0.554 4.554 16 H 0.051 0.949 17 C 0.023 3.977 18 N -0.916 5.916 19 Si 0.972 3.028 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.268 1.268 23 C 0.146 3.854 24 C -0.090 4.090 25 C -0.117 4.117 26 C -0.108 4.108 27 C 0.069 3.931 28 O -0.502 6.502 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.410 0.590 36 H 0.222 0.778 37 H 0.051 0.949 38 H 0.031 0.969 39 H 0.274 0.726 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.148 0.852 44 H 0.156 0.844 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.366 -17.870 -18.560 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.039 3.961 4 C -0.195 4.195 5 C -0.076 4.076 6 C 0.045 3.955 7 N -0.364 5.364 8 C 0.397 3.603 9 O -0.462 6.462 10 C -0.346 4.346 11 C -0.108 4.108 12 N -0.157 5.157 13 N -0.116 5.116 14 C 0.148 3.852 15 C -0.593 4.593 16 H 0.069 0.931 17 C -0.178 4.178 18 N -0.554 5.554 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.199 1.199 22 H -0.193 1.193 23 C 0.010 3.990 24 C -0.148 4.148 25 C -0.136 4.136 26 C -0.126 4.126 27 C 0.023 3.977 28 O -0.314 6.314 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.160 0.840 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.246 0.754 36 H 0.239 0.761 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 11.965 -17.227 -17.098 27.061 hybrid contribution -0.919 -0.287 -0.342 1.022 sum 11.046 -17.514 -17.440 27.072 Atomic orbital electron populations 1.23336 0.76740 1.05515 1.02144 1.86117 1.23023 1.26317 1.88690 1.19630 0.92166 0.85223 0.99127 1.21215 1.00845 0.91030 1.06418 1.19607 0.94120 0.93236 1.00615 1.20137 0.99003 0.93309 0.83004 1.45613 1.55133 1.26616 1.09047 1.17064 0.76860 0.80030 0.86363 1.90686 1.53854 1.55449 1.46204 1.19950 1.17600 1.02572 0.94429 1.24459 0.98271 0.99800 0.88295 1.77096 1.14283 0.99071 1.25274 1.49110 1.37595 1.20130 1.04724 1.19366 0.91787 0.84505 0.89514 1.21420 0.96807 1.07550 1.33479 0.93057 1.25739 1.03214 0.94506 0.94381 1.70004 1.38625 1.13040 1.33757 0.85293 0.78401 0.78474 0.78243 1.19717 1.19898 1.19301 1.21991 0.95040 0.96994 0.84967 1.20589 1.00132 0.96252 0.97808 1.21135 0.92528 0.99273 1.00661 1.21464 1.01715 0.90109 0.99300 1.18063 0.86313 0.87290 1.06012 1.84835 1.71628 1.39835 1.35099 0.92259 0.91536 0.86447 0.83983 0.90885 0.90055 0.75392 0.76123 0.93118 0.95086 0.91654 0.89009 0.88153 0.91237 0.83454 0.82622 0.73733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -5.89 10.28 -79.58 -0.82 -6.71 16 3 C 0.08 1.49 6.70 22.57 0.15 1.64 16 4 C -0.18 -2.75 8.69 22.35 0.19 -2.55 16 5 C -0.08 -1.13 5.25 -19.86 -0.10 -1.23 16 6 C 0.17 2.97 5.80 85.63 0.50 3.47 16 7 N -0.71 -15.14 5.54 -470.12 -2.60 -17.74 16 8 C 0.61 18.48 7.81 86.66 0.68 19.16 16 9 O -0.58 -20.64 14.84 -4.04 -0.06 -20.70 16 10 C -0.33 -11.53 6.13 -20.15 -0.12 -11.65 16 11 C 0.08 2.60 11.50 85.65 0.99 3.58 16 12 N -0.34 -14.51 12.50 -56.27 -0.70 -15.21 16 13 N -0.34 -15.59 3.56 -336.72 -1.20 -16.79 16 14 C 0.27 13.78 5.78 85.64 0.50 14.27 16 15 C -0.55 -30.52 9.39 25.60 0.24 -30.28 16 16 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 17 C 0.02 1.24 5.46 84.66 0.46 1.70 16 18 N -0.92 -51.17 13.29 21.45 0.28 -50.88 16 19 Si 0.97 42.59 29.54 68.60 2.03 44.62 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 C 0.15 5.93 7.01 42.14 0.30 6.22 16 24 C -0.09 -3.24 9.34 71.23 0.67 -2.58 16 25 C -0.12 -1.54 9.69 22.27 0.22 -1.32 16 26 C -0.11 -1.43 9.98 22.35 0.22 -1.20 16 27 C 0.07 1.15 6.72 22.57 0.15 1.30 16 28 O -0.50 -7.96 13.29 -79.62 -1.06 -9.02 16 29 H 0.06 0.64 7.66 -2.39 -0.02 0.63 16 30 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 31 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.14 1.93 6.30 -2.91 -0.02 1.91 16 33 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 34 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 35 H 0.41 7.10 7.42 -92.70 -0.69 6.41 16 36 H 0.22 4.81 7.50 -2.91 -0.02 4.79 16 37 H 0.05 2.61 7.62 -2.38 -0.02 2.60 16 38 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 40 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.10 3.51 6.50 -2.38 -0.02 3.49 16 42 H 0.07 2.66 7.70 -2.39 -0.02 2.64 16 43 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.40 2.64 9.06 -74.06 -0.67 1.97 16 Total: -1.00 -72.45 389.47 1.70 -70.75 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.30 Total: 19.86 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 6.14 Total: 1.83 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -4.22 Total: -100.63 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.94 Total: -36.43 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -72.45 1.70 -70.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417674131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.882 kcal (2) G-P(sol) polarization free energy of solvation -72.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds