Wall clock time and date at job start Wed Apr 1 2020 04:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47547 * 2 1 4 4 N 1.30256 * 125.61719 * 90.00589 * 3 2 1 5 5 C 1.34474 * 108.69888 * 179.97438 * 4 3 2 6 6 C 1.50705 * 126.16278 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.46942 * 275.02545 * 6 5 4 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 C 1.34319 * 107.67175 * 0.26049 * 5 4 3 28 28 O 1.33963 * 125.62156 * 269.96281 * 3 2 1 29 29 H 1.09011 * 109.46662 * 300.00023 * 1 2 3 30 30 H 1.08998 * 109.47317 * 59.99454 * 1 2 3 31 31 H 1.08998 * 109.48062 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.46662 * 239.99977 * 2 1 3 33 33 H 1.08998 * 109.47317 * 120.00546 * 2 1 3 34 34 H 1.08997 * 109.46955 * 155.02381 * 6 5 4 35 35 H 1.08995 * 109.47053 * 35.02069 * 6 5 4 36 36 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 37 37 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 39 39 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 40 40 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 41 41 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 42 42 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 43 43 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 45 45 H 1.07998 * 126.44724 * 179.73711 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2854 2.1359 1.0589 5 6 2.7149 3.3486 0.6676 6 6 3.1173 4.4843 1.5728 7 7 1.9265 5.2431 1.9632 8 6 2.0449 6.3116 2.7761 9 8 3.1399 6.6456 3.1857 10 7 0.9494 7.0101 3.1349 11 6 1.0779 8.1712 4.0189 12 6 -0.2835 8.7690 4.2642 13 6 -0.7672 9.7544 3.4225 14 6 -2.0158 10.3057 3.6446 15 6 -2.7865 9.8691 4.7044 16 6 -2.3014 8.8841 5.5544 17 8 -3.0540 8.4572 6.6004 18 6 -4.2096 9.1124 6.8307 19 1 -4.5391 9.8823 6.1487 20 6 -4.9751 8.7978 7.9432 21 7 -4.5736 7.8604 8.7742 22 14 -6.5758 9.7062 8.2627 23 1 -7.5006 9.4963 7.1200 24 1 -7.1996 9.1875 9.5065 25 1 -6.2996 11.1572 8.4159 26 6 -1.0465 8.3327 5.3291 27 6 2.7155 3.3672 -0.6755 28 8 2.2932 2.1561 -1.0890 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8100 5.1407 1.0462 35 1 3.6017 4.0846 2.4637 36 1 1.0529 4.9769 1.6361 37 1 0.0758 6.7434 2.8083 38 1 1.7226 8.9149 3.5503 39 1 1.5136 7.8588 4.9678 40 1 -0.1686 10.0938 2.5902 41 1 -2.3905 11.0751 2.9860 42 1 -3.7637 10.2964 4.8743 43 1 -5.1089 7.6406 9.5527 44 1 -0.6680 7.5639 5.9862 45 1 3.0030 4.1958 -1.3056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426908069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:40 Heat of formation + Delta-G solvation = -13.144782 kcal Electronic energy + Delta-G solvation = -27925.139650 eV Core-core repulsion = 23717.201253 eV Total energy + Delta-G solvation = -4207.938397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.79064 -39.97593 -39.06499 -36.90684 -36.00581 -34.95472 -34.40548 -33.81885 -32.33601 -30.96435 -30.00033 -29.10544 -27.03585 -25.63103 -24.89784 -24.69537 -21.95342 -21.71034 -21.29464 -20.97902 -20.77115 -18.72062 -17.79645 -17.41061 -17.12815 -16.97167 -16.21017 -15.75600 -15.40694 -15.22827 -15.06334 -14.66767 -14.49458 -14.45286 -14.21304 -14.15899 -13.60684 -13.51636 -13.32797 -13.03650 -12.83492 -12.60093 -12.38111 -12.23186 -12.07659 -11.70507 -11.66522 -11.56910 -11.37207 -10.93671 -10.92659 -10.82178 -10.70418 -10.49591 -10.24798 -9.41510 -9.33386 -9.26596 -8.89027 -8.77428 -8.25005 -7.32871 -6.48864 -4.08546 0.97725 1.83466 2.10336 2.27332 2.30187 3.00562 3.10398 3.12236 3.14510 3.24950 3.49353 3.92616 4.25260 4.29425 4.38878 4.58004 4.62937 4.63890 4.83967 4.94441 5.07183 5.16262 5.23492 5.29271 5.29851 5.34761 5.52619 5.55230 5.57507 5.67016 5.77933 5.84329 5.85525 5.94017 6.07703 6.25682 6.28823 6.55621 6.56854 6.82205 6.89914 7.00344 7.19709 7.27395 7.32672 7.35826 7.71087 7.94992 8.02300 8.61541 8.96210 9.65019 10.68791 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.001864 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.619764 B =15015.344202 C =16514.534489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.194 3.806 4 N -0.468 5.468 5 C -0.032 4.032 6 C 0.225 3.775 7 N -0.745 5.745 8 C 0.706 3.294 9 O -0.594 6.594 10 N -0.735 5.735 11 C 0.187 3.813 12 C -0.073 4.073 13 C -0.194 4.194 14 C -0.077 4.077 15 C -0.226 4.226 16 C 0.150 3.850 17 O -0.176 6.176 18 C -0.394 4.394 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.170 4.170 27 C -0.051 4.051 28 O -0.201 6.201 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.397 0.603 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.833 -10.967 -20.483 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.013 4.013 4 N -0.197 5.197 5 C -0.152 4.152 6 C 0.100 3.900 7 N -0.402 5.402 8 C 0.406 3.594 9 O -0.473 6.473 10 N -0.390 5.390 11 C 0.064 3.936 12 C -0.074 4.074 13 C -0.214 4.214 14 C -0.095 4.095 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.079 6.079 18 C -0.470 4.470 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.189 4.189 27 C -0.123 4.123 28 O -0.087 6.087 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.231 0.769 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.740 -11.175 -19.095 25.047 hybrid contribution -1.605 0.656 -0.871 1.940 sum 10.135 -10.519 -19.966 24.739 Atomic orbital electron populations 1.21797 0.92825 1.03210 1.03149 1.20100 0.97051 0.84062 1.05275 1.26442 0.99419 0.96997 0.78463 1.70400 1.15844 1.03294 1.30164 1.21744 1.06042 0.94694 0.92734 1.19195 0.86770 0.87240 0.96788 1.45051 1.10406 1.31168 1.53556 1.15872 0.84750 0.79642 0.79143 1.90921 1.25466 1.70991 1.59910 1.45249 1.08516 1.32008 1.53215 1.20007 0.94022 0.85921 0.93681 1.19282 0.94662 0.97566 0.95844 1.20483 0.97520 1.01613 1.01774 1.20743 0.94041 0.98218 0.96515 1.21235 1.02146 1.02700 0.98450 1.19332 0.90633 0.91926 0.88529 1.83984 1.31247 1.51843 1.40841 1.21273 0.96216 1.19461 1.10045 0.89098 1.25297 0.99569 0.96873 0.94739 1.70024 1.38217 1.28526 1.12768 0.85779 0.80069 0.79265 0.78309 1.19500 1.20245 1.19470 1.20107 0.93493 1.04619 1.00727 1.24927 1.03944 0.87360 0.96093 1.84475 1.63745 1.22622 1.37873 0.91508 0.92135 0.90733 0.88854 0.87482 0.89788 0.89771 0.76919 0.76722 0.91058 0.90965 0.87494 0.87313 0.85495 0.91887 0.86349 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.03 -0.14 6.56 -27.89 -0.18 -0.32 16 3 C 0.19 1.68 7.60 -12.95 -0.10 1.59 16 4 N -0.47 -5.06 11.29 -7.36 -0.08 -5.14 16 5 C -0.03 -0.31 6.47 -82.82 -0.54 -0.84 16 6 C 0.22 2.27 6.21 -5.19 -0.03 2.23 16 7 N -0.75 -8.19 5.55 -66.41 -0.37 -8.56 16 8 C 0.71 10.04 8.57 -86.91 -0.74 9.30 16 9 O -0.59 -10.59 16.34 5.29 0.09 -10.50 16 10 N -0.74 -9.91 5.55 -66.42 -0.37 -10.28 16 11 C 0.19 2.80 5.80 -5.19 -0.03 2.77 16 12 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 13 C -0.19 -3.17 9.70 -39.53 -0.38 -3.55 16 14 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 15 C -0.23 -4.71 9.17 -39.40 -0.36 -5.07 16 16 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 17 O -0.18 -4.92 9.76 0.05 0.00 -4.92 16 18 C -0.39 -10.80 9.49 30.89 0.29 -10.51 16 19 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 22 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 27 C -0.05 -0.38 12.08 29.35 0.35 -0.02 16 28 O -0.20 -1.70 10.78 5.37 0.06 -1.64 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 3.74 8.48 -40.82 -0.35 3.39 16 37 H 0.40 4.79 8.48 -40.82 -0.35 4.44 16 38 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 39 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.22 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -34.41 393.94 -7.93 -42.34 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.89 Total: 9.75 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.04 Total: -7.93 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.06 Total: -48.23 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.14 Total: -17.06 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.41 -7.93 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426908069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.197 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds