Wall clock time and date at job start Wed Apr 1 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99715 * 2 1 4 4 C 1.38544 * 119.99621 * 359.97438 * 3 2 1 5 5 C 1.39235 * 119.82078 * 179.97438 * 4 3 2 6 6 C 1.48430 * 120.09170 * 179.97438 * 5 4 3 7 7 N 1.30750 * 126.41503 * 359.97438 * 6 5 4 8 8 O 1.21294 * 110.10092 * 179.72485 * 7 6 5 9 9 C 1.33671 * 110.02186 * 0.46869 * 8 7 6 10 10 C 1.50702 * 126.43822 * 179.79910 * 9 8 7 11 11 N 1.46895 * 109.46901 * 269.68626 * 10 9 8 12 12 C 1.47965 * 111.00064 * 189.99915 * 11 10 9 13 13 C 1.53931 * 86.18239 * 222.42041 * 12 11 10 14 14 O 1.42894 * 113.73160 * 269.25510 * 13 12 11 15 15 C 1.50703 * 113.73518 * 138.07915 * 13 12 11 16 16 H 1.08000 * 119.99719 * 17.15762 * 15 13 12 17 17 C 1.37873 * 119.99883 * 197.15659 * 15 13 12 18 18 N 1.31515 * 119.99606 * 194.39693 * 17 15 13 19 19 Si 1.86800 * 120.00373 * 14.40572 * 17 15 13 20 20 H 1.48497 * 109.47317 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.46658 * 299.99749 * 19 17 15 22 22 H 1.48498 * 109.47245 * 59.99510 * 19 17 15 23 23 C 1.48191 * 111.07148 * 90.57075 * 11 10 9 24 24 N 1.30979 * 107.12214 * 359.53542 * 9 8 7 25 25 C 1.39366 * 119.81052 * 0.25033 * 5 4 3 26 26 C 1.38026 * 119.99387 * 359.51893 * 25 5 4 27 27 C 1.38249 * 120.17678 * 0.45988 * 26 25 5 28 28 C 1.50707 * 119.90649 * 179.76651 * 27 26 25 29 29 H 1.09008 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47358 * 300.00106 * 1 2 3 31 31 H 1.09002 * 109.47449 * 60.00427 * 1 2 3 32 32 H 1.07998 * 120.09699 * 359.95668 * 4 3 2 33 33 H 1.08999 * 109.47156 * 149.68707 * 10 9 8 34 34 H 1.09004 * 109.46904 * 29.68785 * 10 9 8 35 35 H 1.08994 * 113.75787 * 108.09572 * 12 11 10 36 36 H 1.09008 * 113.85381 * 336.75361 * 12 11 10 37 37 H 0.96707 * 114.00278 * 174.15409 * 14 13 12 38 38 H 0.96998 * 120.00288 * 354.87234 * 18 17 15 39 39 H 1.09008 * 113.75708 * 23.23197 * 23 11 10 40 40 H 1.09000 * 113.82289 * 251.80905 * 23 11 10 41 41 H 1.07998 * 119.99969 * 179.72618 * 25 5 4 42 42 H 1.08000 * 119.91180 * 180.23323 * 26 25 5 43 43 H 1.08997 * 109.46866 * 270.02481 * 28 27 26 44 44 H 1.09000 * 109.46578 * 30.02611 * 28 27 26 45 45 H 1.09000 * 109.47183 * 150.02125 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3728 -0.0005 5 6 1.9271 3.6115 0.0000 6 6 1.1245 4.8600 -0.0011 7 7 -0.1803 4.9439 -0.0032 8 8 -0.5232 6.1074 0.0019 9 6 0.5520 6.9014 -0.0025 10 6 0.5519 8.4085 -0.0029 11 7 0.5540 8.8977 -1.3880 12 6 0.7937 10.3571 -1.4346 13 6 -0.3121 10.4007 -2.5045 14 8 0.1742 10.2566 -3.8404 15 6 -1.2628 11.5594 -2.3473 16 1 -0.9880 12.4038 -1.7326 17 6 -2.4833 11.5415 -2.9884 18 7 -3.1887 12.6468 -3.0904 19 14 -3.1351 9.9474 -3.7119 20 1 -4.4566 10.1940 -4.3427 21 1 -2.1848 9.4435 -4.7357 22 1 -3.2817 8.9376 -2.6330 23 6 -0.8280 9.0880 -1.8880 24 7 1.6058 6.1236 -0.0007 25 6 3.3193 3.6756 -0.0042 26 6 4.0636 2.5133 0.0012 27 6 3.4319 1.2835 0.0011 28 6 4.2506 0.0182 0.0016 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2127 2.3180 -0.0017 33 1 1.4410 8.7720 0.5122 34 1 -0.3390 8.7718 0.5095 35 1 1.7800 10.6282 -1.8110 36 1 0.5332 10.8762 -0.5122 37 1 -0.5226 10.1938 -4.5080 38 1 -2.8867 13.4572 -2.6512 39 1 -1.5647 9.2335 -1.0978 40 1 -1.1351 8.3470 -2.6261 41 1 3.8157 4.6348 -0.0083 42 1 5.1424 2.5645 0.0017 43 1 4.4487 -0.2867 -1.0259 44 1 5.1947 0.1967 0.5162 45 1 3.7004 -0.7703 0.5150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434465872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:41 Heat of formation + Delta-G solvation = 54.556143 kcal Electronic energy + Delta-G solvation = -29346.988642 eV Core-core repulsion = 25141.985978 eV Total energy + Delta-G solvation = -4205.002664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.49515 -40.57442 -39.53441 -37.93190 -35.89047 -35.00727 -33.64036 -32.58536 -32.20783 -30.57618 -29.33814 -27.96821 -27.45786 -26.19102 -25.65728 -24.13685 -23.24945 -22.33603 -21.83348 -20.90563 -19.23307 -18.52544 -18.09503 -17.85346 -16.98283 -16.63044 -16.13128 -15.81978 -15.73578 -15.45471 -15.21575 -14.90442 -14.76634 -14.19679 -13.90995 -13.73812 -13.53084 -13.30759 -12.97505 -12.80993 -12.65213 -12.51944 -12.35416 -12.23610 -11.95827 -11.72309 -11.69427 -11.58021 -11.36181 -11.22157 -11.08039 -10.96306 -10.69558 -10.39054 -10.21630 -9.75804 -9.41950 -9.02746 -8.96156 -8.64048 -8.38473 -8.17826 -6.69617 -4.43716 0.46389 1.09236 1.31402 2.36554 2.81014 2.90109 3.14411 3.25030 3.37579 3.39446 3.49807 3.90199 4.21880 4.37206 4.46133 4.48690 4.71731 4.82237 4.83180 4.88906 4.92090 5.06900 5.14447 5.15633 5.21334 5.26531 5.34536 5.35553 5.38710 5.44396 5.59829 5.62707 5.66810 5.81489 5.88552 5.94055 6.01607 6.15056 6.22089 6.24175 6.38636 6.39856 6.63591 6.82235 6.99226 7.37921 7.62481 8.09776 8.13630 8.59543 8.80130 9.31451 10.65874 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019886 B = 0.002272 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.692018 B =12323.695510 C =12984.102806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.122 3.878 4 C -0.171 4.171 5 C 0.018 3.982 6 C 0.205 3.795 7 N -0.381 5.381 8 O 0.081 5.919 9 C 0.216 3.784 10 C 0.103 3.897 11 N -0.471 5.471 12 C 0.032 3.968 13 C 0.208 3.792 14 O -0.564 6.564 15 C -0.619 4.619 16 H 0.067 0.933 17 C 0.036 3.964 18 N -0.889 5.889 19 Si 1.042 2.958 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.273 1.273 23 C -0.043 4.043 24 N -0.466 5.466 25 C -0.106 4.106 26 C -0.087 4.087 27 C -0.101 4.101 28 C -0.106 4.106 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.365 0.635 38 H 0.273 0.727 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 -22.123 8.832 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.077 3.923 4 C -0.192 4.192 5 C 0.016 3.984 6 C -0.065 4.065 7 N -0.088 5.088 8 O 0.021 5.979 9 C -0.005 4.005 10 C -0.027 4.027 11 N -0.196 5.196 12 C -0.096 4.096 13 C 0.167 3.833 14 O -0.372 6.372 15 C -0.657 4.657 16 H 0.085 0.915 17 C -0.172 4.172 18 N -0.522 5.522 19 Si 0.870 3.130 20 H -0.207 1.207 21 H -0.207 1.207 22 H -0.199 1.199 23 C -0.171 4.171 24 N -0.200 5.200 25 C -0.126 4.126 26 C -0.105 4.105 27 C -0.103 4.103 28 C -0.163 4.163 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.214 0.786 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.633 -24.143 7.954 27.184 hybrid contribution -0.304 1.480 1.157 1.903 sum 9.329 -22.664 9.111 26.148 Atomic orbital electron populations 1.23107 0.78134 1.04069 1.01744 1.86056 1.21486 1.26243 1.88804 1.18577 0.91658 0.83985 0.98068 1.21193 1.00614 0.90942 1.06407 1.17052 0.91976 0.87018 1.02372 1.23849 0.87617 0.93120 1.01880 1.74829 1.15011 0.97742 1.21176 1.85286 1.36005 1.11213 1.65363 1.28725 0.79915 0.98281 0.93622 1.21292 1.04881 0.80712 0.95844 1.68619 1.20653 1.16747 1.13573 1.23957 1.01015 0.85728 0.98861 1.20236 0.91112 0.90932 0.80992 1.86363 1.37961 1.96072 1.16780 1.22280 1.02219 1.05251 1.35923 0.91507 1.25814 0.93960 1.02711 0.94725 1.70820 1.42955 1.00590 1.37806 0.84111 0.77059 0.74800 0.77063 1.20680 1.20659 1.19896 1.25373 0.89636 1.01228 1.00905 1.71977 1.28530 0.99231 1.20220 1.21149 0.91881 0.99597 0.99938 1.20847 1.00157 0.90405 0.99078 1.19435 0.90523 0.96523 1.03804 1.20649 0.98801 0.94288 1.02543 0.87992 0.92520 0.92426 0.84575 0.86529 0.89760 0.89564 0.90278 0.78619 0.91701 0.89949 0.90835 0.84280 0.84444 0.91079 0.91395 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.12 9.53 -19.44 -0.19 -3.30 16 3 C 0.12 1.36 6.65 -39.27 -0.26 1.09 16 4 C -0.17 -2.10 8.68 -39.10 -0.34 -2.44 16 5 C 0.02 0.24 5.87 -104.91 -0.62 -0.37 16 6 C 0.21 3.27 7.80 -156.12 -1.22 2.05 16 7 N -0.38 -6.28 11.85 30.97 0.37 -5.91 16 8 O 0.08 1.34 11.29 18.03 0.20 1.54 16 9 C 0.22 3.44 8.06 -12.99 -0.10 3.33 16 10 C 0.10 1.51 5.43 -4.98 -0.03 1.48 16 11 N -0.47 -8.66 6.14 -239.46 -1.47 -10.13 16 12 C 0.03 0.61 7.34 -2.76 -0.02 0.59 16 13 C 0.21 4.71 1.07 -90.84 -0.10 4.61 16 14 O -0.56 -13.30 13.47 -35.23 -0.47 -13.77 16 15 C -0.62 -16.00 9.04 -34.44 -0.31 -16.31 16 16 H 0.07 1.85 8.06 -52.49 -0.42 1.42 16 17 C 0.04 0.95 5.44 -17.82 -0.10 0.85 16 18 N -0.89 -25.40 13.70 55.43 0.76 -24.64 16 19 Si 1.04 23.12 24.55 -169.99 -4.17 18.95 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -5.73 5.81 56.52 0.33 -5.40 16 22 H -0.27 -5.65 6.48 56.52 0.37 -5.29 16 23 C -0.04 -0.86 4.73 -2.63 -0.01 -0.87 16 24 N -0.47 -7.63 11.26 -9.88 -0.11 -7.75 16 25 C -0.11 -1.24 9.70 -39.24 -0.38 -1.62 16 26 C -0.09 -0.83 9.68 -39.66 -0.38 -1.21 16 27 C -0.10 -1.00 5.90 -104.41 -0.62 -1.62 16 28 C -0.11 -0.77 9.78 36.01 0.35 -0.42 16 29 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 32 H 0.14 1.61 6.10 -52.49 -0.32 1.29 16 33 H 0.12 1.45 8.08 -51.93 -0.42 1.03 16 34 H 0.08 1.10 7.39 -51.93 -0.38 0.71 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.08 1.36 7.88 -51.92 -0.41 0.95 16 37 H 0.36 8.11 6.07 45.56 0.28 8.39 16 38 H 0.27 7.75 8.73 -40.82 -0.36 7.40 16 39 H 0.08 1.61 7.32 -51.92 -0.38 1.23 16 40 H 0.07 1.51 6.86 -51.93 -0.36 1.16 16 41 H 0.14 1.60 7.87 -52.49 -0.41 1.19 16 42 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 45 H 0.07 0.53 7.52 -51.93 -0.39 0.14 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -31.09 373.91 -7.98 -39.06 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.39 Total: 10.02 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -3.14 Total: -9.70 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.46 Total: -48.43 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.46 Total: -15.53 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.17 Total: 18.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.09 -7.98 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434465872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.618 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds