Wall clock time and date at job start Wed Apr 1 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99715 * 2 1 4 4 C 1.38544 * 119.99621 * 359.97438 * 3 2 1 5 5 C 1.39235 * 119.82078 * 179.97438 * 4 3 2 6 6 C 1.48430 * 120.09170 * 179.97438 * 5 4 3 7 7 N 1.30750 * 126.41503 * 359.97438 * 6 5 4 8 8 O 1.21294 * 110.10092 * 179.72485 * 7 6 5 9 9 C 1.33671 * 110.02186 * 0.46869 * 8 7 6 10 10 C 1.50702 * 126.43822 * 179.79910 * 9 8 7 11 11 N 1.46895 * 109.46901 * 269.68626 * 10 9 8 12 12 C 1.47965 * 111.00064 * 189.99915 * 11 10 9 13 13 C 1.53931 * 86.18239 * 222.42041 * 12 11 10 14 14 O 1.42894 * 113.73160 * 269.25510 * 13 12 11 15 15 C 1.50703 * 113.73518 * 138.07915 * 13 12 11 16 16 H 1.08000 * 119.99719 * 17.15762 * 15 13 12 17 17 C 1.37873 * 119.99883 * 197.15659 * 15 13 12 18 18 N 1.31515 * 119.99606 * 194.39693 * 17 15 13 19 19 Si 1.86800 * 120.00373 * 14.40572 * 17 15 13 20 20 H 1.48497 * 109.47317 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.46658 * 299.99749 * 19 17 15 22 22 H 1.48498 * 109.47245 * 59.99510 * 19 17 15 23 23 C 1.48191 * 111.07148 * 90.57075 * 11 10 9 24 24 N 1.30979 * 107.12214 * 359.53542 * 9 8 7 25 25 C 1.39366 * 119.81052 * 0.25033 * 5 4 3 26 26 C 1.38026 * 119.99387 * 359.51893 * 25 5 4 27 27 C 1.38249 * 120.17678 * 0.45988 * 26 25 5 28 28 C 1.50707 * 119.90649 * 179.76651 * 27 26 25 29 29 H 1.09008 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47358 * 300.00106 * 1 2 3 31 31 H 1.09002 * 109.47449 * 60.00427 * 1 2 3 32 32 H 1.07998 * 120.09699 * 359.95668 * 4 3 2 33 33 H 1.08999 * 109.47156 * 149.68707 * 10 9 8 34 34 H 1.09004 * 109.46904 * 29.68785 * 10 9 8 35 35 H 1.08994 * 113.75787 * 108.09572 * 12 11 10 36 36 H 1.09008 * 113.85381 * 336.75361 * 12 11 10 37 37 H 0.96707 * 114.00278 * 174.15409 * 14 13 12 38 38 H 0.96998 * 120.00288 * 354.87234 * 18 17 15 39 39 H 1.09008 * 113.75708 * 23.23197 * 23 11 10 40 40 H 1.09000 * 113.82289 * 251.80905 * 23 11 10 41 41 H 1.07998 * 119.99969 * 179.72618 * 25 5 4 42 42 H 1.08000 * 119.91180 * 180.23323 * 26 25 5 43 43 H 1.08997 * 109.46866 * 270.02481 * 28 27 26 44 44 H 1.09000 * 109.46578 * 30.02611 * 28 27 26 45 45 H 1.09000 * 109.47183 * 150.02125 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3728 -0.0005 5 6 1.9271 3.6115 0.0000 6 6 1.1245 4.8600 -0.0011 7 7 -0.1803 4.9439 -0.0032 8 8 -0.5232 6.1074 0.0019 9 6 0.5520 6.9014 -0.0025 10 6 0.5519 8.4085 -0.0029 11 7 0.5540 8.8977 -1.3880 12 6 0.7937 10.3571 -1.4346 13 6 -0.3121 10.4007 -2.5045 14 8 0.1742 10.2566 -3.8404 15 6 -1.2628 11.5594 -2.3473 16 1 -0.9880 12.4038 -1.7326 17 6 -2.4833 11.5415 -2.9884 18 7 -3.1887 12.6468 -3.0904 19 14 -3.1351 9.9474 -3.7119 20 1 -4.4566 10.1940 -4.3427 21 1 -2.1848 9.4435 -4.7357 22 1 -3.2817 8.9376 -2.6330 23 6 -0.8280 9.0880 -1.8880 24 7 1.6058 6.1236 -0.0007 25 6 3.3193 3.6756 -0.0042 26 6 4.0636 2.5133 0.0012 27 6 3.4319 1.2835 0.0011 28 6 4.2506 0.0182 0.0016 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2127 2.3180 -0.0017 33 1 1.4410 8.7720 0.5122 34 1 -0.3390 8.7718 0.5095 35 1 1.7800 10.6282 -1.8110 36 1 0.5332 10.8762 -0.5122 37 1 -0.5226 10.1938 -4.5080 38 1 -2.8867 13.4572 -2.6512 39 1 -1.5647 9.2335 -1.0978 40 1 -1.1351 8.3470 -2.6261 41 1 3.8157 4.6348 -0.0083 42 1 5.1424 2.5645 0.0017 43 1 4.4487 -0.2867 -1.0259 44 1 5.1947 0.1967 0.5162 45 1 3.7004 -0.7703 0.5150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434465872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:39 Heat of formation + Delta-G solvation = 29.030128 kcal Electronic energy + Delta-G solvation = -29348.095533 eV Core-core repulsion = 25141.985978 eV Total energy + Delta-G solvation = -4206.109555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.69898 -41.35346 -41.10220 -38.73105 -37.07575 -36.58768 -34.75071 -34.61578 -33.24838 -31.42249 -30.73109 -28.62462 -28.24965 -27.89019 -27.21964 -25.30909 -24.51168 -23.41206 -22.82496 -21.94074 -20.93724 -19.93713 -19.40516 -19.26571 -18.06485 -17.50934 -17.40501 -16.99125 -16.82688 -16.65375 -16.49720 -16.29938 -15.84965 -15.26761 -15.00048 -14.85816 -14.65590 -14.56415 -14.37767 -13.96760 -13.85243 -13.68719 -13.29916 -13.26129 -13.08709 -12.99234 -12.77050 -12.64040 -12.48943 -12.35203 -12.20118 -12.16771 -12.10174 -12.06252 -11.65639 -11.37320 -11.13136 -10.89436 -10.29399 -9.89391 -9.87249 -9.21394 -8.79094 -6.55448 -0.52221 0.15877 0.28133 1.27185 1.39001 1.47366 1.62567 1.64046 2.18349 2.33740 2.37986 2.62577 2.77303 2.90177 2.93977 3.54529 3.67707 3.69748 3.87208 3.90176 4.00545 4.04730 4.12481 4.13865 4.24638 4.27318 4.31430 4.46139 4.48140 4.50873 4.63405 4.66075 4.66907 4.71285 4.79081 4.85882 4.86180 5.09848 5.14183 5.20326 5.24446 5.34265 5.39264 5.64360 5.69623 5.90499 5.95435 6.24039 6.44415 6.94203 7.01060 7.28152 8.54245 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019886 B = 0.002272 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.692018 B =12323.695510 C =12984.102806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.318 6.318 3 C 0.114 3.886 4 C -0.179 4.179 5 C -0.013 4.013 6 C 0.205 3.795 7 N -0.396 5.396 8 O 0.071 5.929 9 C 0.214 3.786 10 C 0.104 3.896 11 N -0.477 5.477 12 C 0.041 3.959 13 C 0.188 3.812 14 O -0.573 6.573 15 C -0.617 4.617 16 H 0.036 0.964 17 C -0.008 4.008 18 N -0.924 5.924 19 Si 1.073 2.927 20 H -0.290 1.290 21 H -0.254 1.254 22 H -0.247 1.247 23 C -0.035 4.035 24 N -0.477 5.477 25 C -0.111 4.111 26 C -0.079 4.079 27 C -0.100 4.100 28 C -0.105 4.105 29 H 0.128 0.872 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.367 0.633 38 H 0.258 0.742 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.171 0.829 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.616 -24.937 9.422 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.232 6.232 3 C 0.069 3.931 4 C -0.200 4.200 5 C -0.015 4.015 6 C -0.065 4.065 7 N -0.105 5.105 8 O 0.014 5.986 9 C -0.007 4.007 10 C -0.025 4.025 11 N -0.201 5.201 12 C -0.086 4.086 13 C 0.147 3.853 14 O -0.381 6.381 15 C -0.655 4.655 16 H 0.054 0.946 17 C -0.209 4.209 18 N -0.559 5.559 19 Si 0.894 3.106 20 H -0.217 1.217 21 H -0.179 1.179 22 H -0.172 1.172 23 C -0.164 4.164 24 N -0.210 5.210 25 C -0.131 4.131 26 C -0.097 4.097 27 C -0.101 4.101 28 C -0.161 4.161 29 H 0.146 0.854 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.217 0.783 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.156 0.844 42 H 0.188 0.812 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.362 -26.951 8.560 30.475 hybrid contribution -0.742 2.318 1.018 2.638 sum 10.620 -24.633 9.578 28.484 Atomic orbital electron populations 1.23323 0.76862 1.05799 1.01644 1.86053 1.22828 1.25656 1.88631 1.18779 0.92368 0.83948 0.98015 1.21206 1.00665 0.91121 1.06960 1.17252 0.92763 0.86601 1.04911 1.24294 0.87642 0.93778 1.00794 1.74815 1.15496 0.97812 1.22374 1.85259 1.36269 1.11342 1.65727 1.28941 0.79795 0.98653 0.93344 1.21449 1.07229 0.79859 0.93997 1.68493 1.19146 1.16206 1.16241 1.23922 0.99983 0.86486 0.98249 1.20406 0.92435 0.91035 0.81408 1.86352 1.38323 1.96100 1.17326 1.22438 1.02876 1.05524 1.34683 0.94608 1.27077 0.94386 1.04474 0.94971 1.70946 1.44077 1.01018 1.39856 0.83764 0.76597 0.72240 0.77990 1.21685 1.17920 1.17160 1.25200 0.90906 0.99329 1.00934 1.71976 1.28855 0.99573 1.20645 1.21271 0.91267 1.00529 1.00038 1.21193 1.01635 0.89362 0.97514 1.19870 0.90372 0.97837 1.02064 1.20718 0.99240 0.92770 1.03366 0.85365 0.92472 0.92709 0.84929 0.83937 0.87711 0.89207 0.88586 0.78313 0.93217 0.89331 0.90905 0.84370 0.81166 0.90189 0.89238 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -5.89 9.53 -92.47 -0.88 -6.77 16 3 C 0.11 2.39 6.65 22.47 0.15 2.54 16 4 C -0.18 -4.32 8.68 22.58 0.20 -4.13 16 5 C -0.01 -0.36 5.87 -20.05 -0.12 -0.48 16 6 C 0.20 6.42 7.80 137.30 1.07 7.49 16 7 N -0.40 -12.92 11.85 -59.15 -0.70 -13.62 16 8 O 0.07 2.29 11.29 74.59 0.84 3.13 16 9 C 0.21 6.47 8.06 88.36 0.71 7.18 16 10 C 0.10 2.78 5.43 85.56 0.46 3.24 16 11 N -0.48 -16.38 6.14 -914.73 -5.62 -22.00 16 12 C 0.04 1.49 7.34 86.41 0.63 2.13 16 13 C 0.19 8.26 1.07 -10.90 -0.01 8.25 16 14 O -0.57 -26.32 13.47 -148.98 -2.01 -28.32 16 15 C -0.62 -32.11 9.04 25.60 0.23 -31.88 16 16 H 0.04 2.03 8.06 -2.91 -0.02 2.01 16 17 C -0.01 -0.43 5.44 84.65 0.46 0.03 16 18 N -0.92 -54.20 13.70 21.45 0.29 -53.90 16 19 Si 1.07 45.78 24.55 68.60 1.68 47.46 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.25 -9.70 5.81 99.48 0.58 -9.13 16 22 H -0.25 -9.49 6.48 99.48 0.64 -8.84 16 23 C -0.03 -1.33 4.73 86.36 0.41 -0.92 16 24 N -0.48 -15.07 11.26 -302.51 -3.41 -18.48 16 25 C -0.11 -2.46 9.70 22.49 0.22 -2.25 16 26 C -0.08 -1.31 9.68 22.22 0.22 -1.09 16 27 C -0.10 -1.74 5.90 -19.73 -0.12 -1.86 16 28 C -0.10 -1.20 9.78 71.24 0.70 -0.50 16 29 H 0.13 0.96 8.14 -2.38 -0.02 0.95 16 30 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 31 H 0.05 0.75 7.66 -2.39 -0.02 0.73 16 32 H 0.13 3.16 6.10 -2.91 -0.02 3.14 16 33 H 0.14 3.08 8.08 -2.39 -0.02 3.06 16 34 H 0.11 2.41 7.39 -2.38 -0.02 2.39 16 35 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.10 3.10 7.88 -2.38 -0.02 3.08 16 37 H 0.37 15.89 6.07 -74.05 -0.45 15.44 16 38 H 0.26 15.35 8.73 -92.71 -0.81 14.54 16 39 H 0.09 3.25 7.32 -2.38 -0.02 3.24 16 40 H 0.07 2.81 6.86 -2.39 -0.02 2.80 16 41 H 0.14 3.02 7.87 -2.91 -0.02 2.99 16 42 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 45 H 0.07 0.85 7.52 -2.39 -0.02 0.83 16 Total: -1.00 -68.25 373.91 -3.11 -71.36 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.36 Total: 32.03 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 6.32 Total: -10.89 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -9.43 Total: -108.00 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -2.04 Total: -31.96 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.68 Total: 47.46 kcal Total: -68.25 -3.11 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434465872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.388 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds