Wall clock time and date at job start Wed Apr 1 2020 03:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38064 * 126.29213 * 2 1 4 4 C 1.47409 * 126.41410 * 359.95945 * 3 2 1 5 5 O 1.21614 * 119.99974 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99959 * 180.02562 * 4 3 2 7 7 C 1.39871 * 119.99653 * 174.91141 * 6 4 3 8 8 C 1.38898 * 120.07584 * 326.43233 * 7 6 4 9 9 C 1.38084 * 119.92793 * 179.74600 * 8 7 6 10 10 C 1.38299 * 120.07499 * 0.52837 * 9 8 7 11 11 C 1.50697 * 119.93414 * 179.70063 * 10 9 8 12 12 O 1.42908 * 109.46875 * 0.02562 * 11 10 9 13 13 C 1.38268 * 120.13965 * 359.72221 * 10 9 8 14 14 C 1.50703 * 119.96099 * 179.97438 * 13 10 9 15 15 O 1.42898 * 109.47040 * 180.02562 * 14 13 10 16 16 C 1.38129 * 120.07153 * 0.02562 * 13 10 9 17 17 C 1.41295 * 107.17113 * 180.23116 * 3 2 1 18 18 N 1.30452 * 108.02068 * 359.61047 * 17 3 2 19 19 N 1.34263 * 126.29974 * 180.02562 * 2 1 3 20 20 C 1.46499 * 125.75023 * 359.96211 * 19 2 1 21 21 C 1.50701 * 109.47251 * 90.00057 * 20 19 2 22 22 H 1.07996 * 120.00059 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00109 * 180.02562 * 21 20 19 24 24 N 1.31509 * 119.99974 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00019 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47103 * 59.99779 * 25 23 21 27 27 H 1.48494 * 109.47480 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47238 * 300.00105 * 25 23 21 29 29 H 1.08998 * 109.46856 * 89.97573 * 1 2 3 30 30 H 1.09000 * 109.46710 * 209.97210 * 1 2 3 31 31 H 1.08998 * 109.46981 * 329.97402 * 1 2 3 32 32 H 0.96994 * 119.99688 * 354.63431 * 6 4 3 33 33 H 1.08009 * 120.03215 * 359.97438 * 8 7 6 34 34 H 1.08011 * 119.96158 * 180.22604 * 9 8 7 35 35 H 1.08991 * 109.47375 * 120.01882 * 11 10 9 36 36 H 1.09001 * 109.47368 * 240.02228 * 11 10 9 37 37 H 0.96697 * 113.99815 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.47692 * 300.02496 * 14 13 10 39 39 H 1.09002 * 109.46814 * 60.03015 * 14 13 10 40 40 H 0.96700 * 114.00540 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.03005 * 179.97438 * 16 13 10 42 42 H 1.07997 * 125.99217 * 179.78007 * 17 3 2 43 43 H 1.08997 * 109.47370 * 210.00280 * 20 19 2 44 44 H 1.09009 * 109.47453 * 330.00170 * 20 19 2 45 45 H 0.97005 * 119.99912 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8860 2.5203 -0.0008 5 8 0.6996 2.7877 -0.0012 6 7 2.8001 3.5107 -0.0013 7 6 2.3878 4.8428 -0.1095 8 6 1.2712 5.1663 -0.8697 9 6 0.8637 6.4818 -0.9702 10 6 1.5724 7.4782 -0.3239 11 6 1.1289 8.9136 -0.4412 12 8 -0.0368 8.9861 -1.2648 13 6 2.6874 7.1601 0.4294 14 6 3.4570 8.2491 1.1316 15 8 4.5580 7.6745 1.8384 16 6 3.0972 5.8455 0.5382 17 6 3.6592 0.6500 -0.0054 18 7 3.6341 -0.6543 0.0000 19 7 2.3018 -1.0821 -0.0005 20 6 1.8503 -2.4758 -0.0003 21 6 1.6948 -2.9536 -1.4211 22 1 1.9102 -2.2858 -2.2420 23 6 1.2764 -4.2430 -1.6729 24 7 1.0135 -5.0560 -0.6732 25 14 1.0828 -4.8351 -3.4340 26 1 2.3884 -4.7381 -4.1351 27 1 0.6253 -6.2478 -3.4339 28 1 0.0817 -3.9901 -4.1331 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 3.7436 3.2998 0.0775 33 1 0.7201 4.3892 -1.3786 34 1 -0.0066 6.7335 -1.5582 35 1 0.8984 9.3048 0.5496 36 1 1.9274 9.5053 -0.8888 37 1 -0.3788 9.8826 -1.3841 38 1 3.8297 8.9625 0.3966 39 1 2.8011 8.7616 1.8353 40 1 5.0987 8.3188 2.3153 41 1 3.9684 5.5979 1.1265 42 1 4.5450 1.2677 -0.0102 43 1 2.5852 -3.0957 0.5131 44 1 0.8919 -2.5472 0.5140 45 1 0.7195 -5.9633 -0.8503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470560578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:38 Heat of formation + Delta-G solvation = -40.667605 kcal Electronic energy + Delta-G solvation = -28957.712984 eV Core-core repulsion = 24748.581108 eV Total energy + Delta-G solvation = -4209.131876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96989 -40.22026 -38.77830 -37.16448 -36.68118 -34.64653 -33.89410 -32.16038 -31.76733 -31.20047 -30.52889 -27.60180 -26.78648 -26.55917 -25.40845 -23.51219 -22.52142 -22.12206 -20.95737 -19.58620 -19.18721 -18.16778 -17.34869 -17.23417 -16.93289 -16.73175 -15.87893 -15.78450 -15.31627 -15.05933 -14.83539 -14.54282 -14.48880 -14.42453 -14.00174 -13.90040 -13.72219 -13.24440 -12.87291 -12.59858 -12.57639 -12.41946 -12.22460 -12.11843 -11.80282 -11.50432 -11.40015 -11.19552 -11.13413 -10.87924 -10.85323 -10.56356 -10.37996 -10.23662 -9.99795 -9.96481 -9.45016 -8.76580 -8.71550 -8.63238 -8.13249 -7.83471 -6.34454 -4.42515 1.16156 1.36466 2.14128 2.74163 3.07584 3.19892 3.23910 3.27917 3.48057 3.59064 3.79303 3.87655 3.93436 4.23691 4.58631 4.77443 4.81447 4.90781 4.92115 4.95291 5.01404 5.08983 5.17113 5.20550 5.40853 5.47394 5.63665 5.67732 5.72631 5.87417 6.00395 6.10433 6.22354 6.33768 6.43172 6.50916 6.51266 6.60897 6.75945 6.88616 7.05101 7.12063 7.22569 7.27201 7.53721 7.59238 7.74654 7.76221 8.32369 8.46258 8.62438 9.24417 10.73721 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.002093 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.650539 B =13377.848429 C =14215.409223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.170 3.830 3 C -0.335 4.335 4 C 0.604 3.396 5 O -0.535 6.535 6 N -0.676 5.676 7 C 0.163 3.837 8 C -0.123 4.123 9 C -0.074 4.074 10 C -0.117 4.117 11 C 0.122 3.878 12 O -0.567 6.567 13 C -0.073 4.073 14 C 0.120 3.880 15 O -0.567 6.567 16 C -0.128 4.128 17 C 0.059 3.941 18 N -0.293 5.293 19 N -0.312 5.312 20 C 0.251 3.749 21 C -0.541 4.541 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.909 3.091 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.409 0.591 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.381 0.619 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.382 0.618 41 H 0.136 0.864 42 H 0.177 0.823 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 28.759 3.418 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.033 3.967 3 C -0.351 4.351 4 C 0.397 3.603 5 O -0.413 6.413 6 N -0.320 5.320 7 C 0.068 3.932 8 C -0.143 4.143 9 C -0.093 4.093 10 C -0.118 4.118 11 C 0.045 3.955 12 O -0.372 6.372 13 C -0.074 4.074 14 C 0.042 3.958 15 O -0.372 6.372 16 C -0.148 4.148 17 C -0.128 4.128 18 N -0.113 5.113 19 N -0.089 5.089 20 C 0.134 3.866 21 C -0.579 4.579 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.245 0.755 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.228 0.772 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.229 0.771 41 H 0.154 0.846 42 H 0.194 0.806 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.861 26.175 3.191 26.523 hybrid contribution 0.236 1.246 -0.597 1.401 sum 3.098 27.420 2.594 27.716 Atomic orbital electron populations 1.20594 0.86674 1.03912 1.04044 1.21485 0.95001 0.86458 0.93793 1.19545 0.93328 0.91966 1.30227 1.17416 0.84911 0.83892 0.74116 1.90714 1.16487 1.84106 1.49969 1.43366 1.10851 1.03751 1.74048 1.17785 0.96066 0.83629 0.95720 1.21286 0.97350 0.96982 0.98663 1.20779 0.99195 0.91131 0.98169 1.19279 0.96496 0.94795 1.01241 1.20811 0.87291 0.93694 0.93723 1.86488 1.45157 1.33671 1.71905 1.19058 0.95396 0.94138 0.98810 1.20854 0.87644 0.93110 0.94170 1.86480 1.42906 1.38568 1.69275 1.20592 1.02184 0.91325 1.00698 1.23747 0.96267 0.92686 1.00087 1.77159 0.98598 1.12180 1.23336 1.49401 1.02469 1.08356 1.48668 1.19876 0.96462 0.70787 0.99496 1.21197 1.47639 0.98175 0.90932 0.91703 1.24922 0.94404 0.95974 0.98333 1.69902 1.44346 1.07219 1.31194 0.86371 0.78898 0.77757 0.83451 1.19891 1.20855 1.19826 0.89683 0.90734 0.88770 0.75513 0.84403 0.84738 0.92636 0.92636 0.77185 0.92341 0.92339 0.77079 0.84621 0.80628 0.92439 0.92493 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.57 36.00 0.34 -1.36 16 2 C 0.17 3.46 7.01 -81.59 -0.57 2.89 16 3 C -0.34 -6.13 6.13 -105.07 -0.64 -6.77 16 4 C 0.60 10.26 7.55 -12.53 -0.09 10.17 16 5 O -0.54 -10.20 12.53 5.27 0.07 -10.14 16 6 N -0.68 -9.26 5.33 -10.84 -0.06 -9.32 16 7 C 0.16 2.25 6.27 -83.71 -0.53 1.73 16 8 C -0.12 -1.77 8.65 -39.39 -0.34 -2.11 16 9 C -0.07 -0.95 9.37 -39.62 -0.37 -1.32 16 10 C -0.12 -1.26 5.88 -104.59 -0.62 -1.88 16 11 C 0.12 0.89 6.42 36.00 0.23 1.12 16 12 O -0.57 -4.43 12.13 -35.23 -0.43 -4.86 16 13 C -0.07 -0.77 5.88 -104.65 -0.62 -1.39 16 14 C 0.12 0.84 6.42 36.01 0.23 1.07 16 15 O -0.57 -4.18 12.14 -35.23 -0.43 -4.61 16 16 C -0.13 -1.54 9.29 -39.39 -0.37 -1.91 16 17 C 0.06 1.03 11.51 -16.98 -0.20 0.84 16 18 N -0.29 -6.28 12.50 30.86 0.39 -5.90 16 19 N -0.31 -7.04 3.56 -57.77 -0.21 -7.25 16 20 C 0.25 6.23 5.97 -5.19 -0.03 6.20 16 21 C -0.54 -14.56 9.39 -34.44 -0.32 -14.89 16 22 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 23 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 24 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 25 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.07 1.31 7.05 -51.93 -0.37 0.94 16 31 H 0.09 1.63 6.50 -51.93 -0.34 1.29 16 32 H 0.41 4.43 7.79 -40.82 -0.32 4.11 16 33 H 0.14 2.20 6.43 -52.48 -0.34 1.86 16 34 H 0.13 1.66 7.00 -52.48 -0.37 1.29 16 35 H 0.06 0.32 8.00 -51.93 -0.42 -0.10 16 36 H 0.06 0.30 8.00 -51.93 -0.42 -0.11 16 37 H 0.38 1.04 9.12 45.56 0.42 1.46 16 38 H 0.06 0.30 8.00 -51.93 -0.42 -0.11 16 39 H 0.06 0.32 8.00 -51.93 -0.42 -0.09 16 40 H 0.38 0.92 9.12 45.56 0.42 1.34 16 41 H 0.14 1.55 7.00 -52.49 -0.37 1.18 16 42 H 0.18 2.17 7.51 -52.49 -0.39 1.78 16 43 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.06 1.40 7.02 -51.92 -0.36 1.04 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -34.46 382.02 -7.25 -41.71 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.07 Total: 8.52 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.98 Total: -5.89 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.86 Total: -46.30 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.79 Total: -19.61 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.46 -7.25 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470560578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.041 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds