Wall clock time and date at job start Wed Apr 1 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38064 * 126.29213 * 2 1 4 4 C 1.47409 * 126.41410 * 359.95945 * 3 2 1 5 5 O 1.21614 * 119.99974 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99959 * 180.02562 * 4 3 2 7 7 C 1.39871 * 119.99653 * 174.91141 * 6 4 3 8 8 C 1.38898 * 120.07584 * 326.43233 * 7 6 4 9 9 C 1.38084 * 119.92793 * 179.74600 * 8 7 6 10 10 C 1.38299 * 120.07499 * 0.52837 * 9 8 7 11 11 C 1.50697 * 119.93414 * 179.70063 * 10 9 8 12 12 O 1.42908 * 109.46875 * 0.02562 * 11 10 9 13 13 C 1.38268 * 120.13965 * 359.72221 * 10 9 8 14 14 C 1.50703 * 119.96099 * 179.97438 * 13 10 9 15 15 O 1.42898 * 109.47040 * 180.02562 * 14 13 10 16 16 C 1.38129 * 120.07153 * 0.02562 * 13 10 9 17 17 C 1.41295 * 107.17113 * 180.23116 * 3 2 1 18 18 N 1.30452 * 108.02068 * 359.61047 * 17 3 2 19 19 N 1.34263 * 126.29974 * 180.02562 * 2 1 3 20 20 C 1.46499 * 125.75023 * 359.96211 * 19 2 1 21 21 C 1.50701 * 109.47251 * 90.00057 * 20 19 2 22 22 H 1.07996 * 120.00059 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00109 * 180.02562 * 21 20 19 24 24 N 1.31509 * 119.99974 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00019 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47103 * 59.99779 * 25 23 21 27 27 H 1.48494 * 109.47480 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47238 * 300.00105 * 25 23 21 29 29 H 1.08998 * 109.46856 * 89.97573 * 1 2 3 30 30 H 1.09000 * 109.46710 * 209.97210 * 1 2 3 31 31 H 1.08998 * 109.46981 * 329.97402 * 1 2 3 32 32 H 0.96994 * 119.99688 * 354.63431 * 6 4 3 33 33 H 1.08009 * 120.03215 * 359.97438 * 8 7 6 34 34 H 1.08011 * 119.96158 * 180.22604 * 9 8 7 35 35 H 1.08991 * 109.47375 * 120.01882 * 11 10 9 36 36 H 1.09001 * 109.47368 * 240.02228 * 11 10 9 37 37 H 0.96697 * 113.99815 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.47692 * 300.02496 * 14 13 10 39 39 H 1.09002 * 109.46814 * 60.03015 * 14 13 10 40 40 H 0.96700 * 114.00540 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.03005 * 179.97438 * 16 13 10 42 42 H 1.07997 * 125.99217 * 179.78007 * 17 3 2 43 43 H 1.08997 * 109.47370 * 210.00280 * 20 19 2 44 44 H 1.09009 * 109.47453 * 330.00170 * 20 19 2 45 45 H 0.97005 * 119.99912 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8860 2.5203 -0.0008 5 8 0.6996 2.7877 -0.0012 6 7 2.8001 3.5107 -0.0013 7 6 2.3878 4.8428 -0.1095 8 6 1.2712 5.1663 -0.8697 9 6 0.8637 6.4818 -0.9702 10 6 1.5724 7.4782 -0.3239 11 6 1.1289 8.9136 -0.4412 12 8 -0.0368 8.9861 -1.2648 13 6 2.6874 7.1601 0.4294 14 6 3.4570 8.2491 1.1316 15 8 4.5580 7.6745 1.8384 16 6 3.0972 5.8455 0.5382 17 6 3.6592 0.6500 -0.0054 18 7 3.6341 -0.6543 0.0000 19 7 2.3018 -1.0821 -0.0005 20 6 1.8503 -2.4758 -0.0003 21 6 1.6948 -2.9536 -1.4211 22 1 1.9102 -2.2858 -2.2420 23 6 1.2764 -4.2430 -1.6729 24 7 1.0135 -5.0560 -0.6732 25 14 1.0828 -4.8351 -3.4340 26 1 2.3884 -4.7381 -4.1351 27 1 0.6253 -6.2478 -3.4339 28 1 0.0817 -3.9901 -4.1331 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 3.7436 3.2998 0.0775 33 1 0.7201 4.3892 -1.3786 34 1 -0.0066 6.7335 -1.5582 35 1 0.8984 9.3048 0.5496 36 1 1.9274 9.5053 -0.8888 37 1 -0.3788 9.8826 -1.3841 38 1 3.8297 8.9625 0.3966 39 1 2.8011 8.7616 1.8353 40 1 5.0987 8.3188 2.3153 41 1 3.9684 5.5979 1.1265 42 1 4.5450 1.2677 -0.0102 43 1 2.5852 -3.0957 0.5131 44 1 0.8919 -2.5472 0.5140 45 1 0.7195 -5.9633 -0.8503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470560578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:37 Heat of formation + Delta-G solvation = -68.069540 kcal Electronic energy + Delta-G solvation = -28958.901221 eV Core-core repulsion = 24748.581108 eV Total energy + Delta-G solvation = -4210.320113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.44618 -41.30871 -39.85601 -37.67469 -37.43189 -35.90318 -35.62697 -33.88194 -32.94077 -32.44149 -31.55478 -29.25811 -28.31587 -27.31556 -26.32899 -25.32208 -23.82551 -22.99760 -22.15172 -20.82152 -20.65752 -19.06934 -18.86356 -18.27057 -18.03752 -17.79713 -16.91047 -16.74686 -16.52692 -16.31700 -16.17112 -15.76324 -15.70110 -15.28215 -15.15550 -14.94404 -14.71414 -14.66291 -14.28546 -14.13669 -13.75267 -13.66500 -13.61056 -13.45021 -13.12399 -13.00302 -12.79883 -12.70633 -12.31853 -12.24652 -11.96240 -11.90064 -11.77275 -11.55556 -11.05929 -10.94096 -10.77320 -10.72375 -10.31362 -9.66969 -9.60783 -8.90150 -8.39257 -6.55693 0.16989 0.42913 0.68969 1.27617 1.37242 1.38024 1.46179 1.58879 2.17315 2.31472 2.38008 2.82546 2.92967 3.32012 3.41191 3.65202 3.68741 3.92104 3.99646 4.05335 4.12394 4.18560 4.30993 4.43720 4.49889 4.50883 4.52999 4.58371 4.69554 4.72998 4.76018 4.84562 4.87841 5.04419 5.08783 5.12444 5.31531 5.38804 5.47188 5.56862 5.61133 5.64708 5.72816 5.99186 6.06724 6.46335 6.52453 6.78374 6.98887 7.01119 7.15206 7.18959 8.68476 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.002093 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.650539 B =13377.848429 C =14215.409223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.151 3.849 3 C -0.332 4.332 4 C 0.606 3.394 5 O -0.561 6.561 6 N -0.660 5.660 7 C 0.140 3.860 8 C -0.145 4.145 9 C -0.088 4.088 10 C -0.114 4.114 11 C 0.122 3.878 12 O -0.591 6.591 13 C -0.074 4.074 14 C 0.121 3.879 15 O -0.589 6.589 16 C -0.128 4.128 17 C 0.082 3.918 18 N -0.333 5.333 19 N -0.336 5.336 20 C 0.267 3.733 21 C -0.557 4.557 22 H 0.051 0.949 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.267 1.267 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.423 0.577 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.402 0.598 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.403 0.597 41 H 0.144 0.856 42 H 0.228 0.772 43 H 0.033 0.967 44 H 0.052 0.948 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 32.125 3.351 32.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.015 3.985 3 C -0.347 4.347 4 C 0.398 3.602 5 O -0.440 6.440 6 N -0.304 5.304 7 C 0.046 3.954 8 C -0.165 4.165 9 C -0.107 4.107 10 C -0.115 4.115 11 C 0.045 3.955 12 O -0.401 6.401 13 C -0.075 4.075 14 C 0.044 3.956 15 O -0.398 6.398 16 C -0.149 4.149 17 C -0.105 4.105 18 N -0.152 5.152 19 N -0.113 5.113 20 C 0.148 3.852 21 C -0.595 4.595 22 H 0.070 0.930 23 C -0.177 4.177 24 N -0.553 5.553 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.192 1.192 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.261 0.739 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.253 0.747 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.254 0.746 41 H 0.162 0.838 42 H 0.244 0.756 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.043 29.608 3.138 30.047 hybrid contribution -0.085 0.446 -0.530 0.698 sum 3.958 30.054 2.608 30.426 Atomic orbital electron populations 1.20571 0.85771 1.04144 1.04042 1.21948 0.95947 0.86644 0.93942 1.19764 0.93575 0.92273 1.29128 1.17241 0.84961 0.83871 0.74171 1.90705 1.17684 1.84371 1.51245 1.43101 1.11028 1.03375 1.72942 1.17900 0.96753 0.83682 0.97061 1.21182 0.98116 0.97306 0.99918 1.20842 0.99709 0.91099 0.99014 1.19721 0.95806 0.96415 0.99576 1.20943 0.88017 0.91376 0.95201 1.86437 1.45554 1.35941 1.72137 1.19550 0.95283 0.94623 0.98071 1.20951 0.87816 0.91806 0.95053 1.86413 1.43366 1.40262 1.69751 1.20754 1.02090 0.91707 1.00301 1.24531 0.97527 0.91676 0.96812 1.77113 0.98268 1.14263 1.25552 1.49133 1.03361 1.07796 1.50978 1.19400 0.95393 0.72187 0.98211 1.21349 1.48107 0.98514 0.91508 0.93027 1.25725 0.93803 0.95928 1.02285 1.69985 1.44680 1.07610 1.33071 0.85410 0.78824 0.77705 0.78619 1.19824 1.19692 1.19207 0.89751 0.90816 0.88060 0.73851 0.86982 0.85104 0.90330 0.89944 0.74695 0.89748 0.90182 0.74574 0.83815 0.75584 0.94882 0.93050 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.57 71.24 0.68 -2.59 16 2 C 0.15 6.32 7.01 42.15 0.30 6.62 16 3 C -0.33 -12.13 6.13 -20.15 -0.12 -12.25 16 4 C 0.61 20.62 7.55 86.66 0.65 21.27 16 5 O -0.56 -21.93 12.53 -4.07 -0.05 -21.98 16 6 N -0.66 -17.58 5.33 -306.45 -1.63 -19.21 16 7 C 0.14 3.81 6.27 38.17 0.24 4.05 16 8 C -0.14 -4.31 8.65 22.39 0.19 -4.11 16 9 C -0.09 -2.24 9.37 22.25 0.21 -2.03 16 10 C -0.11 -2.21 5.88 -19.84 -0.12 -2.33 16 11 C 0.12 1.34 6.42 71.23 0.46 1.80 16 12 O -0.59 -7.84 12.13 -148.98 -1.81 -9.65 16 13 C -0.07 -1.37 5.88 -19.88 -0.12 -1.48 16 14 C 0.12 1.18 6.42 71.24 0.46 1.63 16 15 O -0.59 -6.53 12.14 -148.98 -1.81 -8.34 16 16 C -0.13 -2.88 9.29 22.39 0.21 -2.67 16 17 C 0.08 2.74 11.51 85.65 0.99 3.73 16 18 N -0.33 -14.39 12.50 -56.27 -0.70 -15.09 16 19 N -0.34 -15.66 3.56 -336.67 -1.20 -16.86 16 20 C 0.27 13.86 5.97 85.63 0.51 14.37 16 21 C -0.56 -30.88 9.39 25.60 0.24 -30.64 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 23 C 0.02 1.31 5.46 84.66 0.46 1.78 16 24 N -0.92 -51.48 13.29 21.45 0.28 -51.20 16 25 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 29 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.07 2.72 7.05 -2.39 -0.02 2.70 16 31 H 0.10 3.62 6.50 -2.39 -0.02 3.60 16 32 H 0.42 8.38 7.79 -92.71 -0.72 7.66 16 33 H 0.11 3.83 6.43 -2.91 -0.02 3.81 16 34 H 0.13 3.30 7.00 -2.90 -0.02 3.28 16 35 H 0.08 0.54 8.00 -2.39 -0.02 0.52 16 36 H 0.08 0.50 8.00 -2.39 -0.02 0.48 16 37 H 0.40 1.10 9.12 -74.06 -0.68 0.43 16 38 H 0.08 0.43 8.00 -2.39 -0.02 0.41 16 39 H 0.08 0.48 8.00 -2.39 -0.02 0.46 16 40 H 0.40 0.41 9.12 -74.06 -0.68 -0.26 16 41 H 0.14 2.94 7.00 -2.91 -0.02 2.92 16 42 H 0.23 4.89 7.51 -2.91 -0.02 4.87 16 43 H 0.03 1.84 8.14 -2.39 -0.02 1.83 16 44 H 0.05 2.67 7.02 -2.38 -0.02 2.66 16 45 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -77.32 382.02 -0.64 -77.96 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.99 Total: 22.22 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.24 Total: -2.87 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.25 Total: -102.35 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -3.67 Total: -39.97 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -77.32 -0.64 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470560578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.892 kcal (2) G-P(sol) polarization free energy of solvation -77.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds