Wall clock time and date at job start Wed Apr 1 2020 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 108.57800 * 2 1 4 4 C 1.50706 * 109.46739 * 300.70033 * 3 2 1 5 5 O 1.21275 * 120.00158 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99674 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99845 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47332 * 179.97438 * 7 6 4 9 9 H 1.09003 * 112.84891 * 316.19512 * 8 7 6 10 10 C 1.53776 * 113.69292 * 87.46486 * 8 7 6 11 11 C 1.53780 * 87.08340 * 139.99435 * 10 8 7 12 12 H 1.08996 * 113.69235 * 89.12922 * 11 10 8 13 13 N 1.46506 * 113.61356 * 220.01816 * 11 10 8 14 14 C 1.36939 * 120.00073 * 252.22120 * 13 11 10 15 15 H 1.08004 * 119.99859 * 0.02562 * 14 13 11 16 16 C 1.38805 * 119.99849 * 180.02562 * 14 13 11 17 17 N 1.31622 * 120.00455 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00168 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47227 * 89.99498 * 18 16 14 20 20 H 1.48496 * 109.47434 * 209.99930 * 18 16 14 21 21 H 1.48507 * 109.46769 * 330.00032 * 18 16 14 22 22 C 1.53776 * 87.08054 * 334.56633 * 11 10 8 23 23 C 1.53205 * 108.64479 * 117.99037 * 2 1 3 24 24 C 1.55349 * 106.34108 * 93.26297 * 23 2 1 25 25 S 1.83904 * 99.54326 * 37.18245 * 24 23 2 26 26 O 1.42094 * 111.46543 * 215.81508 * 25 24 23 27 27 O 1.42105 * 111.61501 * 75.80468 * 25 24 23 28 28 N 1.46440 * 108.64961 * 241.99833 * 2 1 3 29 29 H 1.08997 * 109.47217 * 59.30729 * 1 2 3 30 30 H 1.09000 * 109.46902 * 179.30304 * 1 2 3 31 31 H 1.08998 * 109.47493 * 299.30179 * 1 2 3 32 32 H 1.08993 * 109.47183 * 180.69831 * 3 2 1 33 33 H 1.09000 * 109.47163 * 60.69232 * 3 2 1 34 34 H 0.96998 * 120.00450 * 359.97438 * 6 4 3 35 35 H 1.09000 * 109.47278 * 60.00091 * 7 6 4 36 36 H 1.09007 * 109.47570 * 299.99935 * 7 6 4 37 37 H 1.09009 * 113.61629 * 25.44504 * 10 8 7 38 38 H 1.09007 * 113.61606 * 254.54165 * 10 8 7 39 39 H 0.97005 * 119.99811 * 72.49914 * 13 11 10 40 40 H 0.97000 * 120.00679 * 179.97438 * 17 16 14 41 41 H 1.09008 * 113.61560 * 139.97766 * 22 11 10 42 42 H 1.08997 * 113.61573 * 270.80097 * 22 11 10 43 43 H 1.08996 * 110.10269 * 212.57901 * 23 2 1 44 44 H 1.08996 * 110.10174 * 334.19446 * 23 2 1 45 45 H 1.08993 * 111.50061 * 279.58158 * 24 23 2 46 46 H 1.09004 * 111.37879 * 154.73720 * 24 23 2 47 47 H 0.96999 * 126.08438 * 60.81711 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4503 0.0000 4 6 1.4899 2.1575 -1.2218 5 8 0.7931 1.5603 -2.0146 6 7 1.7933 3.4535 -1.4338 7 6 1.2809 4.1408 -2.6217 8 6 1.7682 5.5911 -2.6217 9 1 1.6867 6.0650 -1.6435 10 6 3.1420 5.7813 -3.2859 11 6 2.5786 7.0739 -3.8998 12 1 2.7183 7.9539 -3.2721 13 7 2.9931 7.2935 -5.2877 14 6 3.9048 8.2715 -5.5835 15 1 4.3187 8.8806 -4.7935 16 6 4.2970 8.4799 -6.8985 17 7 3.7931 7.7372 -7.8613 18 14 5.5413 9.8135 -7.3020 19 1 6.9121 9.2453 -7.2443 20 1 5.2799 10.3381 -8.6664 21 1 5.4211 10.9173 -6.3157 22 6 1.1854 6.4368 -3.7664 23 6 2.0198 -0.6813 1.2818 24 6 2.2400 -2.1771 0.9251 25 16 2.8987 -1.9898 -0.7817 26 8 2.4548 -3.0409 -1.6286 27 8 4.2501 -1.5506 -0.7759 28 7 1.9983 -0.6514 -1.2251 29 1 -0.3633 0.5245 -0.8837 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3634 0.5029 0.8961 32 1 3.1072 1.4673 -0.0125 33 1 1.6564 1.9550 0.8961 34 1 2.3509 3.9311 -0.7999 35 1 0.1911 4.1241 -2.6094 36 1 1.6419 3.6358 -3.5178 37 1 3.3802 5.0152 -4.0238 38 1 3.9507 5.9519 -2.5752 39 1 2.6186 6.7488 -5.9977 40 1 4.0668 7.8830 -8.7803 41 1 0.4144 7.1365 -3.4435 42 1 0.8881 5.8510 -4.6361 43 1 2.9568 -0.2318 1.6105 44 1 1.2665 -0.5927 2.0645 45 1 1.3014 -2.7313 0.9299 46 1 2.9737 -2.6393 1.5855 47 1 1.8188 -0.3587 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479339809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:24 Heat of formation + Delta-G solvation = -70.251167 kcal Electronic energy + Delta-G solvation = -28268.504116 eV Core-core repulsion = 24193.533352 eV Total energy + Delta-G solvation = -4074.970764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58448 -38.88020 -37.92485 -37.28752 -36.15669 -34.76149 -33.33057 -32.22069 -31.19684 -30.25744 -28.67505 -26.82912 -25.12216 -24.79122 -23.79335 -21.36272 -21.03451 -20.44751 -19.86085 -19.07690 -17.86050 -17.20903 -17.00561 -16.85652 -16.36444 -16.01478 -15.75879 -15.33872 -14.99583 -14.80957 -14.51203 -14.16014 -13.84321 -13.80078 -13.58339 -13.46451 -13.06641 -12.90043 -12.74649 -12.41164 -12.32269 -12.27500 -11.97286 -11.92183 -11.84982 -11.61597 -11.42800 -11.28568 -11.25457 -10.94352 -10.84301 -10.55009 -10.25625 -10.14097 -9.86080 -9.80470 -9.76589 -9.48590 -9.08011 -8.88458 -6.98098 -5.79600 -3.08721 -0.08916 2.27577 2.46864 2.99149 3.27728 3.41924 3.46849 3.47840 3.48790 3.78756 4.00753 4.13960 4.42908 4.56800 4.58435 4.68797 4.86872 4.90849 4.92994 5.00608 5.03168 5.08918 5.19681 5.20175 5.29623 5.44491 5.46881 5.53749 5.71141 5.77583 5.81418 5.89672 6.06783 6.08947 6.23991 6.29198 6.33151 6.42247 6.56507 6.79474 6.98947 7.08360 7.37170 7.67400 8.09192 8.38838 9.49868 10.07960 10.41965 11.42718 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.001920 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.551525 B =14579.290959 C =15321.035859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.159 3.841 3 C -0.151 4.151 4 C 0.515 3.485 5 O -0.538 6.538 6 N -0.723 5.723 7 C 0.131 3.869 8 C -0.127 4.127 9 H 0.087 0.913 10 C -0.161 4.161 11 C 0.166 3.834 12 H 0.075 0.925 13 N -0.713 5.713 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.143 4.143 23 C -0.119 4.119 24 C -0.592 4.592 25 S 2.565 3.435 26 O -0.961 6.961 27 O -0.953 6.953 28 N -1.079 6.079 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 -18.057 25.434 32.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.068 3.932 3 C -0.193 4.193 4 C 0.301 3.699 5 O -0.416 6.416 6 N -0.374 5.374 7 C 0.008 3.992 8 C -0.147 4.147 9 H 0.106 0.894 10 C -0.202 4.202 11 C 0.054 3.946 12 H 0.093 0.907 13 N -0.351 5.351 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.182 4.182 23 C -0.158 4.158 24 C -0.723 4.723 25 S 2.658 3.342 26 O -0.950 6.950 27 O -0.943 6.943 28 N -0.849 5.849 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.132 0.868 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -6.890 -18.852 24.279 31.501 hybrid contribution 0.372 1.135 0.004 1.194 sum -6.518 -17.717 24.283 30.758 Atomic orbital electron populations 1.22582 0.92961 1.03046 1.04504 1.20242 0.96806 0.91960 0.84145 1.22215 1.03524 0.95610 0.97924 1.20431 0.80196 0.81822 0.87403 1.90583 1.38271 1.65462 1.47254 1.46097 1.53208 1.11476 1.26616 1.21448 0.98498 0.91846 0.87381 1.22636 0.99555 0.93433 0.99029 0.89437 1.23951 0.94373 1.02377 0.99491 1.21516 0.91291 0.93887 0.87951 0.90697 1.42419 1.49763 1.41086 1.01795 1.19294 1.16190 1.09844 0.92278 0.91106 1.24778 1.00609 0.99768 0.95789 1.69659 1.46835 1.41824 0.99655 0.86185 0.81187 0.81364 0.77404 1.21679 1.21754 1.20745 1.23452 0.99239 0.98460 0.97089 1.22489 1.05174 0.90707 0.97428 1.30726 1.13866 1.03641 1.24043 1.06555 0.75037 0.74593 0.77971 1.93615 1.82039 1.56131 1.63264 1.93666 1.33827 1.80693 1.86065 1.55114 1.71357 1.45358 1.13029 0.88358 0.92341 0.92198 0.87745 0.87762 0.76549 0.91746 0.91164 0.90352 0.92786 0.78063 0.93418 0.92047 0.90124 0.88266 0.86829 0.84010 0.84168 0.71299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 8.17 37.16 0.30 -0.82 16 2 C 0.16 0.99 0.83 -131.74 -0.11 0.88 16 3 C -0.15 -0.90 4.68 -27.88 -0.13 -1.03 16 4 C 0.52 5.01 7.31 -10.98 -0.08 4.93 16 5 O -0.54 -6.85 11.79 5.56 0.07 -6.78 16 6 N -0.72 -6.77 5.56 -60.30 -0.33 -7.11 16 7 C 0.13 1.56 5.51 -4.05 -0.02 1.53 16 8 C -0.13 -1.58 3.75 -89.81 -0.34 -1.92 16 9 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 10 C -0.16 -2.57 7.43 -25.92 -0.19 -2.76 16 11 C 0.17 3.13 4.48 -67.12 -0.30 2.83 16 12 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 13 N -0.71 -17.63 5.40 -52.64 -0.28 -17.92 16 14 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 18 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.14 -2.18 7.39 -25.92 -0.19 -2.38 16 23 C -0.12 -0.38 5.54 -25.38 -0.14 -0.52 16 24 C -0.59 -2.13 7.65 38.40 0.29 -1.84 16 25 S 2.56 22.01 6.47 -107.50 -0.70 21.31 16 26 O -0.96 -12.03 18.14 -57.40 -1.04 -13.07 16 27 O -0.95 -11.41 18.14 -57.40 -1.04 -12.45 16 28 N -1.08 -9.42 5.70 0.60 0.00 -9.42 16 29 H 0.10 0.94 5.35 -51.93 -0.28 0.66 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.27 8.04 -51.93 -0.42 -0.14 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.40 2.79 8.47 -40.82 -0.35 2.44 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 37 H 0.08 1.40 7.90 -51.92 -0.41 0.99 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.39 10.19 7.92 -40.82 -0.32 9.86 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 43 H 0.10 0.20 7.83 -51.93 -0.41 -0.20 16 44 H 0.11 0.13 7.71 -51.93 -0.40 -0.27 16 45 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.14 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.44 4.59 7.22 -40.36 -0.29 4.30 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -37.56 387.24 -10.42 -47.97 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.47 Total: 10.26 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.15 Total: -8.46 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.11 Total: -61.88 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -2.02 Total: -32.31 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 22.01 SS G_CDS: -0.70 Total: 21.31 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.56 -10.42 -47.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479339809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.279 kcal (2) G-P(sol) polarization free energy of solvation -37.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds