Wall clock time and date at job start Wed Apr 1 2020 04:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 108.57800 * 2 1 4 4 C 1.50706 * 109.46739 * 300.70033 * 3 2 1 5 5 O 1.21275 * 120.00158 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99674 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99845 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47332 * 179.97438 * 7 6 4 9 9 H 1.09003 * 112.84891 * 316.19512 * 8 7 6 10 10 C 1.53776 * 113.69292 * 87.46486 * 8 7 6 11 11 C 1.53780 * 87.08340 * 139.99435 * 10 8 7 12 12 H 1.08996 * 113.69235 * 89.12922 * 11 10 8 13 13 N 1.46506 * 113.61356 * 220.01816 * 11 10 8 14 14 C 1.36939 * 120.00073 * 252.22120 * 13 11 10 15 15 H 1.08004 * 119.99859 * 0.02562 * 14 13 11 16 16 C 1.38805 * 119.99849 * 180.02562 * 14 13 11 17 17 N 1.31622 * 120.00455 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00168 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47227 * 89.99498 * 18 16 14 20 20 H 1.48496 * 109.47434 * 209.99930 * 18 16 14 21 21 H 1.48507 * 109.46769 * 330.00032 * 18 16 14 22 22 C 1.53776 * 87.08054 * 334.56633 * 11 10 8 23 23 C 1.53205 * 108.64479 * 117.99037 * 2 1 3 24 24 C 1.55349 * 106.34108 * 93.26297 * 23 2 1 25 25 S 1.83904 * 99.54326 * 37.18245 * 24 23 2 26 26 O 1.42094 * 111.46543 * 215.81508 * 25 24 23 27 27 O 1.42105 * 111.61501 * 75.80468 * 25 24 23 28 28 N 1.46440 * 108.64961 * 241.99833 * 2 1 3 29 29 H 1.08997 * 109.47217 * 59.30729 * 1 2 3 30 30 H 1.09000 * 109.46902 * 179.30304 * 1 2 3 31 31 H 1.08998 * 109.47493 * 299.30179 * 1 2 3 32 32 H 1.08993 * 109.47183 * 180.69831 * 3 2 1 33 33 H 1.09000 * 109.47163 * 60.69232 * 3 2 1 34 34 H 0.96998 * 120.00450 * 359.97438 * 6 4 3 35 35 H 1.09000 * 109.47278 * 60.00091 * 7 6 4 36 36 H 1.09007 * 109.47570 * 299.99935 * 7 6 4 37 37 H 1.09009 * 113.61629 * 25.44504 * 10 8 7 38 38 H 1.09007 * 113.61606 * 254.54165 * 10 8 7 39 39 H 0.97005 * 119.99811 * 72.49914 * 13 11 10 40 40 H 0.97000 * 120.00679 * 179.97438 * 17 16 14 41 41 H 1.09008 * 113.61560 * 139.97766 * 22 11 10 42 42 H 1.08997 * 113.61573 * 270.80097 * 22 11 10 43 43 H 1.08996 * 110.10269 * 212.57901 * 23 2 1 44 44 H 1.08996 * 110.10174 * 334.19446 * 23 2 1 45 45 H 1.08993 * 111.50061 * 279.58158 * 24 23 2 46 46 H 1.09004 * 111.37879 * 154.73720 * 24 23 2 47 47 H 0.96999 * 126.08438 * 60.81711 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4503 0.0000 4 6 1.4899 2.1575 -1.2218 5 8 0.7931 1.5603 -2.0146 6 7 1.7933 3.4535 -1.4338 7 6 1.2809 4.1408 -2.6217 8 6 1.7682 5.5911 -2.6217 9 1 1.6867 6.0650 -1.6435 10 6 3.1420 5.7813 -3.2859 11 6 2.5786 7.0739 -3.8998 12 1 2.7183 7.9539 -3.2721 13 7 2.9931 7.2935 -5.2877 14 6 3.9048 8.2715 -5.5835 15 1 4.3187 8.8806 -4.7935 16 6 4.2970 8.4799 -6.8985 17 7 3.7931 7.7372 -7.8613 18 14 5.5413 9.8135 -7.3020 19 1 6.9121 9.2453 -7.2443 20 1 5.2799 10.3381 -8.6664 21 1 5.4211 10.9173 -6.3157 22 6 1.1854 6.4368 -3.7664 23 6 2.0198 -0.6813 1.2818 24 6 2.2400 -2.1771 0.9251 25 16 2.8987 -1.9898 -0.7817 26 8 2.4548 -3.0409 -1.6286 27 8 4.2501 -1.5506 -0.7759 28 7 1.9983 -0.6514 -1.2251 29 1 -0.3633 0.5245 -0.8837 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3634 0.5029 0.8961 32 1 3.1072 1.4673 -0.0125 33 1 1.6564 1.9550 0.8961 34 1 2.3509 3.9311 -0.7999 35 1 0.1911 4.1241 -2.6094 36 1 1.6419 3.6358 -3.5178 37 1 3.3802 5.0152 -4.0238 38 1 3.9507 5.9519 -2.5752 39 1 2.6186 6.7488 -5.9977 40 1 4.0668 7.8830 -8.7803 41 1 0.4144 7.1365 -3.4435 42 1 0.8881 5.8510 -4.6361 43 1 2.9568 -0.2318 1.6105 44 1 1.2665 -0.5927 2.0645 45 1 1.3014 -2.7313 0.9299 46 1 2.9737 -2.6393 1.5855 47 1 1.8188 -0.3587 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479339809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:23 Heat of formation + Delta-G solvation = -102.338516 kcal Electronic energy + Delta-G solvation = -28269.895528 eV Core-core repulsion = 24193.533352 eV Total energy + Delta-G solvation = -4076.362176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.27330 -40.03951 -38.65924 -38.03083 -36.91292 -35.98622 -34.97031 -32.64003 -32.31121 -31.57578 -29.45313 -27.78272 -26.45747 -25.83340 -25.03869 -22.51088 -21.81707 -21.16973 -20.48751 -20.40023 -19.05058 -18.49286 -17.86785 -17.42059 -17.20942 -16.73460 -16.59780 -16.51040 -16.17344 -15.81701 -15.46662 -15.29371 -14.94562 -14.81964 -14.49465 -14.12851 -14.01565 -13.53705 -13.46030 -13.24963 -13.21331 -13.20112 -13.06976 -13.06883 -12.90983 -12.77850 -12.56009 -12.45333 -12.21013 -12.08918 -12.07008 -11.79049 -11.56457 -11.50753 -11.39954 -11.08344 -10.82974 -10.51643 -10.32935 -9.94810 -8.98571 -7.95459 -5.23939 -0.65879 1.46293 1.48287 1.56585 1.69642 1.76253 2.28474 2.56044 2.73414 3.07972 3.36240 3.39170 3.56792 3.70642 3.74260 3.77160 3.90370 4.01465 4.12028 4.26133 4.29835 4.35859 4.43975 4.55579 4.57639 4.63865 4.74873 4.78332 4.81349 4.91233 4.97269 4.97742 4.98928 5.06500 5.12254 5.22969 5.31615 5.38290 5.45051 5.52804 5.70792 5.77041 6.24345 6.26853 6.67609 7.32051 7.39470 8.10843 8.32122 9.28143 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.001920 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.551525 B =14579.290959 C =15321.035859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.148 3.852 3 C -0.146 4.146 4 C 0.505 3.495 5 O -0.573 6.573 6 N -0.717 5.717 7 C 0.139 3.861 8 C -0.093 4.093 9 H 0.124 0.876 10 C -0.154 4.154 11 C 0.142 3.858 12 H 0.082 0.918 13 N -0.731 5.731 14 C -0.241 4.241 15 H 0.080 0.920 16 C -0.082 4.082 17 N -0.973 5.973 18 Si 0.974 3.026 19 H -0.289 1.289 20 H -0.298 1.298 21 H -0.265 1.265 22 C -0.138 4.138 23 C -0.117 4.117 24 C -0.547 4.547 25 S 2.543 3.457 26 O -1.017 7.017 27 O -1.000 7.000 28 N -1.090 6.090 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.146 0.854 34 H 0.415 0.585 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.151 0.849 45 H 0.163 0.837 46 H 0.173 0.827 47 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 -17.663 30.535 36.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.058 3.942 3 C -0.187 4.187 4 C 0.294 3.706 5 O -0.454 6.454 6 N -0.369 5.369 7 C 0.015 3.985 8 C -0.112 4.112 9 H 0.142 0.858 10 C -0.195 4.195 11 C 0.033 3.967 12 H 0.100 0.900 13 N -0.369 5.369 14 C -0.373 4.373 15 H 0.098 0.902 16 C -0.274 4.274 17 N -0.624 5.624 18 Si 0.803 3.197 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.190 1.190 22 C -0.177 4.177 23 C -0.156 4.156 24 C -0.683 4.683 25 S 2.644 3.356 26 O -1.006 7.006 27 O -0.989 6.989 28 N -0.856 5.856 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.164 0.836 34 H 0.252 0.748 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.169 0.831 45 H 0.181 0.819 46 H 0.191 0.809 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -7.242 -18.448 29.437 35.487 hybrid contribution 0.390 0.989 -1.463 1.808 sum -6.852 -17.459 27.974 33.680 Atomic orbital electron populations 1.22544 0.93234 1.03082 1.04108 1.20632 0.96738 0.92453 0.84410 1.22317 1.03842 0.95268 0.97302 1.21239 0.79514 0.81614 0.88257 1.90595 1.39858 1.66155 1.48750 1.45986 1.53347 1.11684 1.25933 1.21134 0.98443 0.91356 0.87562 1.22460 0.95802 0.93530 0.99366 0.85782 1.23716 0.96877 0.99647 0.99239 1.21985 0.94012 0.95390 0.85347 0.90008 1.42661 1.49735 1.40579 1.03880 1.19742 1.15561 1.09564 0.92446 0.90193 1.25625 1.03269 1.02542 0.95954 1.69829 1.48939 1.44033 0.99625 0.85125 0.78572 0.79064 0.76925 1.21609 1.22449 1.19010 1.23328 0.97720 0.98806 0.97881 1.22703 1.07351 0.89313 0.96210 1.30529 1.15024 1.05192 1.17530 1.06934 0.74424 0.73740 0.80516 1.93537 1.82409 1.57669 1.67019 1.93599 1.36555 1.81053 1.87720 1.55143 1.71167 1.45841 1.13493 0.91872 0.92054 0.89444 0.86983 0.83589 0.74791 0.91672 0.94260 0.93084 0.91377 0.79766 0.94143 0.90261 0.91830 0.86335 0.83073 0.81913 0.80877 0.72820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.17 71.98 0.59 -1.22 16 2 C 0.15 1.43 0.83 3.69 0.00 1.43 16 3 C -0.15 -1.27 4.68 29.85 0.14 -1.13 16 4 C 0.51 9.19 7.31 87.66 0.64 9.83 16 5 O -0.57 -14.93 11.79 -3.01 -0.04 -14.97 16 6 N -0.72 -12.08 5.56 -463.07 -2.57 -14.65 16 7 C 0.14 3.20 5.51 86.38 0.48 3.68 16 8 C -0.09 -2.11 3.75 -10.27 -0.04 -2.15 16 9 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 10 C -0.15 -4.81 7.43 31.12 0.23 -4.58 16 11 C 0.14 5.29 4.48 45.51 0.20 5.50 16 12 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 13 N -0.73 -37.01 5.40 -320.45 -1.73 -38.74 16 14 C -0.24 -13.39 9.97 84.03 0.84 -12.56 16 15 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 16 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 17 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 18 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 23 C -0.12 -0.13 5.54 31.47 0.17 0.04 16 24 C -0.55 -1.66 7.65 72.79 0.56 -1.11 16 25 S 2.54 43.82 6.47 -56.49 -0.37 43.45 16 26 O -1.02 -27.25 18.14 -127.79 -2.32 -29.57 16 27 O -1.00 -24.65 18.14 -127.79 -2.32 -26.97 16 28 N -1.09 -19.16 5.70 -152.03 -0.87 -20.02 16 29 H 0.06 1.17 5.35 -2.39 -0.01 1.16 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.41 8.04 -2.39 -0.02 0.39 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.42 4.40 8.47 -92.71 -0.79 3.62 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.15 7.85 -2.38 -0.02 1.13 16 37 H 0.05 1.89 7.90 -2.38 -0.02 1.87 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.37 20.52 7.92 -92.70 -0.73 19.79 16 40 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 43 H 0.12 -0.21 7.83 -2.39 -0.02 -0.22 16 44 H 0.15 -0.77 7.71 -2.39 -0.02 -0.79 16 45 H 0.16 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.17 -0.42 8.14 -2.38 -0.02 -0.44 16 47 H 0.43 9.80 7.22 -93.00 -0.67 9.13 16 Total: -1.00 -88.93 387.24 -4.57 -93.50 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -1.18 Total: 30.50 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 4.51 Total: -10.45 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -4.89 Total: -134.00 kcal Atomic # 8 Polarization: -66.84 SS G_CDS: -4.67 Total: -71.51 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 16 Polarization: 43.82 SS G_CDS: -0.37 Total: 43.45 kcal Total: -88.93 -4.57 -93.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479339809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.835 kcal (2) G-P(sol) polarization free energy of solvation -88.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds