Wall clock time and date at job start Wed Apr 1 2020 02:58:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.49475 * 2 1
4 4 N 1.46505 * 109.47549 * 300.00052 * 3 2 1
5 5 C 1.34770 * 119.99971 * 180.02562 * 4 3 2
6 6 O 1.21275 * 120.00340 * 359.97438 * 5 4 3
7 7 C 1.50701 * 119.99712 * 179.97438 * 5 4 3
8 8 H 1.08999 * 109.35110 * 40.69869 * 7 5 4
9 9 C 1.54066 * 109.35671 * 280.98411 * 7 5 4
10 10 C 1.55611 * 104.29500 * 194.61882 * 9 7 5
11 11 S 1.83449 * 100.72166 * 37.92005 * 10 9 7
12 12 O 1.42097 * 111.24920 * 89.27473 * 11 10 9
13 13 O 1.42099 * 111.24426 * 228.37313 * 11 10 9
14 14 N 1.47064 * 109.35636 * 160.40957 * 7 5 4
15 15 C 1.53037 * 109.49831 * 120.09547 * 2 1 3
16 16 C 1.53041 * 109.53397 * 58.59034 * 15 2 1
17 17 C 1.53191 * 109.31810 * 61.36594 * 16 15 2
18 18 N 1.46929 * 108.76883 * 305.36320 * 17 16 15
19 19 C 1.36940 * 120.63064 * 233.58005 * 18 17 16
20 20 H 1.08000 * 119.99560 * 27.70469 * 19 18 17
21 21 C 1.38806 * 120.00395 * 207.70865 * 19 18 17
22 22 N 1.31621 * 120.00042 * 17.35071 * 21 19 18
23 23 Si 1.86806 * 119.99936 * 197.36022 * 21 19 18
24 24 H 1.48502 * 109.47103 * 89.99500 * 23 21 19
25 25 H 1.48503 * 109.46676 * 209.99683 * 23 21 19
26 26 H 1.48494 * 109.46904 * 329.99598 * 23 21 19
27 27 C 1.46923 * 118.74234 * 53.61018 * 18 17 16
28 28 H 1.08999 * 109.47196 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.47730 * 300.06581 * 1 2 3
30 30 H 1.09005 * 109.47179 * 60.06567 * 1 2 3
31 31 H 1.09004 * 109.47414 * 60.00286 * 3 2 1
32 32 H 1.09005 * 109.47331 * 180.02562 * 3 2 1
33 33 H 0.96999 * 119.99700 * 359.97438 * 4 3 2
34 34 H 1.08994 * 110.46431 * 313.32306 * 9 7 5
35 35 H 1.09000 * 110.46815 * 75.91719 * 9 7 5
36 36 H 1.09003 * 111.16173 * 155.78312 * 10 9 7
37 37 H 1.08998 * 111.16709 * 280.00624 * 10 9 7
38 38 H 0.96994 * 126.30342 * 329.17778 * 14 7 5
39 39 H 1.09002 * 109.46202 * 178.60365 * 15 2 1
40 40 H 1.08994 * 109.46034 * 298.57373 * 15 2 1
41 41 H 1.09004 * 109.50043 * 301.40949 * 16 15 2
42 42 H 1.09005 * 109.52216 * 181.33636 * 16 15 2
43 43 H 1.09000 * 109.58727 * 185.57990 * 17 16 15
44 44 H 1.09000 * 109.70128 * 65.21681 * 17 16 15
45 45 H 0.96998 * 119.99625 * 180.02562 * 22 21 19
46 46 H 1.09000 * 109.58864 * 186.59836 * 27 18 17
47 47 H 1.09005 * 109.70212 * 66.24135 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0406 1.4423 0.0000
4 7 1.5525 2.1332 -1.1962
5 6 1.8791 3.4232 -1.4096
6 8 2.5766 4.0123 -0.6113
7 6 1.3776 4.1337 -2.6404
8 1 0.3419 3.8485 -2.8252
9 6 2.2419 3.7308 -3.8504
10 6 1.8907 4.7837 -4.9411
11 16 1.7257 6.2956 -3.9152
12 8 2.9715 6.9661 -3.7822
13 8 0.5291 6.9979 -4.2219
14 7 1.4525 5.5871 -2.4287
15 6 2.0408 -0.7234 1.2481
16 6 1.5030 -2.1561 1.2653
17 6 2.0140 -2.9040 0.0299
18 7 1.6515 -2.1377 -1.1702
19 6 0.9639 -2.7307 -2.1953
20 1 0.3081 -3.5648 -1.9942
21 6 1.1100 -2.2598 -3.4929
22 7 2.1347 -1.4945 -3.8038
23 14 -0.1480 -2.7120 -4.7978
24 1 -1.2303 -1.6953 -4.8153
25 1 0.5119 -2.7555 -6.1274
26 1 -0.7255 -4.0445 -4.4878
27 6 2.0412 -0.7234 -1.2498
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3634 0.5148 0.8894
30 1 -0.3634 0.5128 -0.8906
31 1 1.6775 1.9563 0.8900
32 1 3.1306 1.4419 -0.0005
33 1 0.9950 1.6619 -1.8349
34 1 3.3006 3.7832 -3.5969
35 1 1.9793 2.7287 -4.1896
36 1 2.6994 4.8854 -5.6648
37 1 0.9511 4.5389 -5.4364
38 1 1.3591 6.0496 -1.5812
39 1 3.1305 -0.7448 1.2351
40 1 1.6986 -0.1965 2.1388
41 1 0.4132 -2.1359 1.2534
42 1 1.8475 -2.6637 2.1663
43 1 1.5554 -3.8918 -0.0149
44 1 3.0978 -3.0064 0.0845
45 1 2.2365 -1.1652 -4.7105
46 1 1.6007 -0.2724 -2.1390
47 1 3.1272 -0.6437 -1.2995
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484176653.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:58:54
Heat of formation + Delta-G solvation = -83.980371 kcal
Electronic energy + Delta-G solvation = -29991.425491 eV
Core-core repulsion = 25915.859384 eV
Total energy + Delta-G solvation = -4075.566107 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.156 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.16544 -38.62415 -37.21932 -36.61505 -36.03038 -34.90871 -33.33320 -31.99647
-31.49227 -29.99699 -27.76418 -26.52216 -25.49839 -25.07620 -22.98567 -22.24053
-20.73337 -20.35558 -19.76241 -18.43544 -17.83121 -17.46581 -16.84489 -16.50580
-15.95825 -15.70924 -15.38383 -14.93246 -14.80569 -14.26326 -14.06803 -14.00978
-13.94300 -13.56256 -13.41548 -13.23468 -12.92796 -12.69006 -12.33114 -12.30963
-12.25243 -12.15768 -12.12530 -11.78039 -11.69508 -11.40989 -11.06622 -10.96361
-10.81542 -10.76109 -10.48654 -10.28826 -10.20244 -10.14055 -9.92489 -9.73187
-9.49242 -9.47903 -8.88314 -8.60116 -6.78279 -5.92384 -3.33764 0.01537
2.27836 2.58116 3.21065 3.25089 3.34401 3.35510 3.38175 3.73279
4.06126 4.21976 4.36955 4.52767 4.66921 4.93200 5.02917 5.07231
5.18308 5.21328 5.33946 5.41019 5.45309 5.49243 5.57759 5.68600
5.86854 5.94182 5.99534 6.07618 6.15389 6.32660 6.34476 6.44939
6.50417 6.62123 6.73979 6.78486 6.86822 6.87620 6.95234 7.17505
7.44430 7.60455 7.67227 8.23343 8.30959 9.08414 9.71403 10.28895
11.15598
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.012323 B = 0.003532 C = 0.002918
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2271.620417 B = 7926.717858 C = 9593.777145
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.104 4.104
3 C 0.136 3.864
4 N -0.711 5.711
5 C 0.513 3.487
6 O -0.533 6.533
7 C 0.095 3.905
8 H 0.107 0.893
9 C -0.121 4.121
10 C -0.593 4.593
11 S 2.579 3.421
12 O -0.957 6.957
13 O -0.959 6.959
14 N -1.083 6.083
15 C -0.095 4.095
16 C -0.135 4.135
17 C 0.143 3.857
18 N -0.589 5.589
19 C -0.247 4.247
20 H 0.065 0.935
21 C 0.003 3.997
22 N -0.903 5.903
23 Si 0.898 3.102
24 H -0.287 1.287
25 H -0.292 1.292
26 H -0.279 1.279
27 C 0.185 3.815
28 H 0.072 0.928
29 H 0.036 0.964
30 H 0.044 0.956
31 H 0.061 0.939
32 H 0.065 0.935
33 H 0.407 0.593
34 H 0.103 0.897
35 H 0.127 0.873
36 H 0.147 0.853
37 H 0.146 0.854
38 H 0.438 0.562
39 H 0.056 0.944
40 H 0.048 0.952
41 H 0.062 0.938
42 H 0.050 0.950
43 H 0.052 0.948
44 H 0.017 0.983
45 H 0.253 0.747
46 H 0.088 0.912
47 H 0.018 0.982
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.385 8.533 2.060 9.096
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.106 4.106
3 C 0.012 3.988
4 N -0.364 5.364
5 C 0.296 3.704
6 O -0.409 6.409
7 C -0.017 4.017
8 H 0.125 0.875
9 C -0.160 4.160
10 C -0.724 4.724
11 S 2.673 3.327
12 O -0.946 6.946
13 O -0.948 6.948
14 N -0.850 5.850
15 C -0.133 4.133
16 C -0.174 4.174
17 C 0.016 3.984
18 N -0.311 5.311
19 C -0.377 4.377
20 H 0.083 0.917
21 C -0.195 4.195
22 N -0.548 5.548
23 Si 0.728 3.272
24 H -0.215 1.215
25 H -0.218 1.218
26 H -0.205 1.205
27 C 0.059 3.941
28 H 0.091 0.909
29 H 0.055 0.945
30 H 0.063 0.937
31 H 0.079 0.921
32 H 0.084 0.916
33 H 0.244 0.756
34 H 0.122 0.878
35 H 0.145 0.855
36 H 0.165 0.835
37 H 0.164 0.836
38 H 0.279 0.721
39 H 0.075 0.925
40 H 0.066 0.934
41 H 0.081 0.919
42 H 0.068 0.932
43 H 0.071 0.929
44 H 0.035 0.965
45 H 0.063 0.937
46 H 0.106 0.894
47 H 0.036 0.964
Dipole moment (debyes) X Y Z Total
from point charges -1.787 9.956 2.179 10.347
hybrid contribution -0.865 -1.055 -0.717 1.541
sum -2.652 8.901 1.462 9.402
Atomic orbital electron populations
1.21727 0.94457 1.02720 0.99446 1.21558 0.96513 0.92627 0.99901
1.21429 0.99015 0.92087 0.86304 1.46092 1.52947 1.11284 1.26046
1.20189 0.80958 0.82338 0.86936 1.90710 1.37474 1.66206 1.46519
1.21647 1.01873 0.82831 0.95380 0.87487 1.22675 1.02020 1.01726
0.89603 1.30841 1.12388 1.18323 1.10833 1.06089 0.74916 0.75728
0.75923 1.93633 1.44736 1.71788 1.84413 1.93631 1.47457 1.70307
1.83447 1.54943 1.91466 1.12480 1.26123 1.21341 0.99975 0.96016
0.95990 1.22042 1.00990 0.95683 0.98692 1.20938 0.96436 0.94257
0.86735 1.43992 1.65290 1.05588 1.16204 1.19209 1.17732 1.14893
0.85821 0.91687 1.24981 0.97013 1.00746 0.96785 1.70053 1.27286
1.38778 1.18707 0.86359 0.81130 0.78445 0.81298 1.21456 1.21804
1.20468 1.20794 0.96240 0.83825 0.93237 0.90917 0.94491 0.93685
0.92110 0.91628 0.75581 0.87830 0.85477 0.83533 0.83582 0.72110
0.92537 0.93376 0.91939 0.93175 0.92930 0.96506 0.93724 0.89356
0.96407
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.93 7.81 37.16 0.29 -1.64 16
2 C -0.10 -1.64 0.53 -154.39 -0.08 -1.72 16
3 C 0.14 1.99 4.57 -4.04 -0.02 1.97 16
4 N -0.71 -9.59 5.00 -60.29 -0.30 -9.89 16
5 C 0.51 6.94 7.05 -10.99 -0.08 6.86 16
6 O -0.53 -8.99 16.40 5.56 0.09 -8.90 16
7 C 0.09 0.97 3.41 -68.22 -0.23 0.73 16
8 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16
9 C -0.12 -1.07 6.09 -24.78 -0.15 -1.22 16
10 C -0.59 -4.18 7.51 38.55 0.29 -3.89 16
11 S 2.58 26.74 6.49 -107.50 -0.70 26.04 16
12 O -0.96 -13.52 18.13 -57.43 -1.04 -14.56 16
13 O -0.96 -12.65 18.14 -57.43 -1.04 -13.70 16
14 N -1.08 -11.49 6.31 -5.08 -0.03 -11.52 16
15 C -0.10 -1.42 4.71 -26.69 -0.13 -1.55 16
16 C -0.13 -2.10 5.74 -26.61 -0.15 -2.25 16
17 C 0.14 2.72 6.52 -3.71 -0.02 2.70 16
18 N -0.59 -13.00 2.43 -172.32 -0.42 -13.42 16
19 C -0.25 -6.07 9.58 -15.06 -0.14 -6.22 16
20 H 0.07 1.61 7.89 -52.49 -0.41 1.19 16
21 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16
22 N -0.90 -23.07 11.19 55.49 0.62 -22.44 16
23 Si 0.90 19.63 29.59 -169.99 -5.03 14.60 16
24 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16
25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
27 C 0.19 3.73 3.73 -3.71 -0.01 3.72 16
28 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16
29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.04 0.67 6.87 -51.93 -0.36 0.31 16
31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
33 H 0.41 5.26 6.22 -40.82 -0.25 5.01 16
34 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16
35 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16
36 H 0.15 0.78 8.14 -51.93 -0.42 0.36 16
37 H 0.15 0.75 8.14 -51.93 -0.42 0.32 16
38 H 0.44 4.57 8.74 -40.30 -0.35 4.22 16
39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
41 H 0.06 0.99 6.33 -51.93 -0.33 0.66 16
42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
43 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16
44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
45 H 0.25 6.24 8.31 -40.82 -0.34 5.90 16
46 H 0.09 1.90 4.94 -51.93 -0.26 1.64 16
47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
LS Contribution 376.17 15.07 5.67 5.67
Total: -1.00 -33.61 376.17 -10.02 -43.64
By element:
Atomic # 1 Polarization: 14.31 SS G_CDS: -7.31 Total: 7.00 kcal
Atomic # 6 Polarization: -1.99 SS G_CDS: -0.53 Total: -2.52 kcal
Atomic # 7 Polarization: -57.14 SS G_CDS: -0.13 Total: -57.27 kcal
Atomic # 8 Polarization: -35.16 SS G_CDS: -1.99 Total: -37.15 kcal
Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal
Atomic # 16 Polarization: 26.74 SS G_CDS: -0.70 Total: 26.04 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -33.61 -10.02 -43.64 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484176653.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.344 kcal
(2) G-P(sol) polarization free energy of solvation -33.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.958 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.980 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds