Wall clock time and date at job start Wed Apr 1 2020 02:58:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53002 * 109.50188 * 2 1
4 4 N 1.46498 * 109.46942 * 60.06037 * 3 2 1
5 5 C 1.34771 * 120.00160 * 180.02562 * 4 3 2
6 6 O 1.21287 * 120.00055 * 0.02562 * 5 4 3
7 7 C 1.50704 * 120.00404 * 180.02562 * 5 4 3
8 8 H 1.09007 * 109.75172 * 319.27172 * 7 5 4
9 9 C 1.54107 * 109.76638 * 79.99365 * 7 5 4
10 10 C 1.54920 * 105.89717 * 165.31685 * 9 7 5
11 11 S 1.83181 * 102.71047 * 334.83666 * 10 9 7
12 12 O 1.42095 * 111.27695 * 111.02869 * 11 10 9
13 13 O 1.42107 * 111.27230 * 250.22306 * 11 10 9
14 14 N 1.47984 * 109.76452 * 198.54267 * 7 5 4
15 15 C 1.53041 * 109.50028 * 239.90201 * 2 1 3
16 16 C 1.53038 * 109.53719 * 301.41770 * 15 2 1
17 17 C 1.53631 * 109.24213 * 298.50741 * 16 15 2
18 18 N 1.46923 * 108.54036 * 54.85570 * 17 16 15
19 19 C 1.36940 * 120.62812 * 126.37121 * 18 17 16
20 20 H 1.07996 * 119.99628 * 332.04078 * 19 18 17
21 21 C 1.38808 * 119.99786 * 152.04325 * 19 18 17
22 22 N 1.31621 * 119.99993 * 342.64203 * 21 19 18
23 23 Si 1.86803 * 120.00030 * 162.64367 * 21 19 18
24 24 H 1.48493 * 109.47189 * 179.97438 * 23 21 19
25 25 H 1.48496 * 109.47080 * 299.99782 * 23 21 19
26 26 H 1.48506 * 109.47106 * 59.99619 * 23 21 19
27 27 C 1.46928 * 118.74171 * 306.09682 * 18 17 16
28 28 H 1.09001 * 109.47119 * 299.93735 * 1 2 3
29 29 H 1.09004 * 109.46982 * 59.93409 * 1 2 3
30 30 H 1.09001 * 109.47425 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47456 * 180.02562 * 3 2 1
32 32 H 1.09007 * 109.46877 * 300.06619 * 3 2 1
33 33 H 0.97004 * 120.00270 * 0.02562 * 4 3 2
34 34 H 1.08996 * 110.17001 * 284.42476 * 9 7 5
35 35 H 1.09000 * 110.16747 * 46.21215 * 9 7 5
36 36 H 1.09007 * 110.76401 * 93.13644 * 10 9 7
37 37 H 1.08997 * 110.76683 * 216.53392 * 10 9 7
38 38 H 0.96999 * 127.77207 * 16.16955 * 14 7 5
39 39 H 1.09010 * 109.46048 * 61.43469 * 15 2 1
40 40 H 1.08997 * 109.46401 * 181.40478 * 15 2 1
41 41 H 1.08994 * 109.50474 * 58.58488 * 16 15 2
42 42 H 1.09005 * 109.49773 * 178.68222 * 16 15 2
43 43 H 1.09000 * 109.73449 * 295.11703 * 17 16 15
44 44 H 1.08998 * 109.66186 * 174.55352 * 17 16 15
45 45 H 0.97002 * 119.99607 * 180.02562 * 22 21 19
46 46 H 1.08999 * 109.58917 * 173.65023 * 27 18 17
47 47 H 1.09003 * 109.58668 * 293.93191 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0407 1.4422 0.0000
4 7 1.5539 2.1326 1.1969
5 6 1.8800 3.4228 1.4101
6 8 2.5760 4.0125 0.6108
7 6 1.3797 4.1329 2.6416
8 1 0.3441 3.8520 2.8338
9 6 2.2553 3.7559 3.8525
10 6 1.9225 4.7914 4.9556
11 16 1.3341 6.2331 3.9908
12 8 -0.0578 6.4470 4.1804
13 8 2.2680 7.3031 4.0413
14 7 1.4735 5.5970 2.4479
15 6 2.0408 -0.7234 -1.2481
16 6 1.5030 -2.1561 -1.2654
17 6 2.0188 -2.9055 -0.0275
18 7 1.6515 -2.1379 1.1702
19 6 0.9639 -2.7308 2.1952
20 1 0.3080 -3.5649 1.9940
21 6 1.1099 -2.2598 3.4928
22 7 2.1347 -1.4947 3.8037
23 14 -0.1480 -2.7120 4.7977
24 1 0.2333 -2.0881 6.0901
25 1 -1.4872 -2.2197 4.3859
26 1 -0.1900 -4.1882 4.9544
27 6 2.0412 -0.7235 1.2498
28 1 -0.3633 0.5129 0.8905
29 1 -0.3633 0.5149 -0.8894
30 1 -0.3634 -1.0277 -0.0005
31 1 3.1307 1.4417 -0.0005
32 1 1.6767 1.9566 -0.8895
33 1 0.9969 1.6612 1.8360
34 1 2.0104 2.7504 4.1948
35 1 3.3106 3.8163 3.5865
36 1 1.1357 4.4182 5.6113
37 1 2.8146 5.0472 5.5273
38 1 1.5903 6.0798 1.6148
39 1 1.6988 -0.1964 -2.1389
40 1 3.1305 -0.7450 -1.2350
41 1 0.4133 -2.1359 -1.2535
42 1 1.8481 -2.6634 -2.1664
43 1 3.1032 -3.0024 -0.0812
44 1 1.5635 -3.8948 0.0186
45 1 2.2369 -1.1658 4.7106
46 1 1.6007 -0.2725 2.1390
47 1 3.1273 -0.6460 1.3008
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484176656.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:58:58
Heat of formation + Delta-G solvation = -83.417608 kcal
Electronic energy + Delta-G solvation = -29982.778179 eV
Core-core repulsion = 25907.236475 eV
Total energy + Delta-G solvation = -4075.541704 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.156 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.16616 -38.61193 -37.28013 -36.58007 -36.05483 -34.91918 -33.33241 -31.91975
-31.48736 -29.98956 -27.77737 -26.51704 -25.49678 -25.08611 -22.95177 -22.22352
-20.75714 -20.42761 -19.75586 -18.45893 -17.83730 -17.30875 -16.82176 -16.46390
-16.11088 -15.63371 -15.36562 -15.10441 -14.78762 -14.26344 -14.07062 -13.99508
-13.92196 -13.59353 -13.40132 -13.23018 -12.94319 -12.70548 -12.33671 -12.32590
-12.25668 -12.18714 -12.06438 -11.71827 -11.66482 -11.40953 -11.05709 -10.94850
-10.84163 -10.74160 -10.50714 -10.29080 -10.20601 -10.06972 -9.92176 -9.77362
-9.59062 -9.48027 -8.90647 -8.59120 -6.77486 -5.92030 -3.33376 0.01143
2.26051 2.55132 3.16778 3.27460 3.33492 3.36082 3.41000 3.79757
4.06150 4.20781 4.37697 4.52416 4.64448 4.87332 4.97531 5.04585
5.18476 5.26952 5.33951 5.41024 5.49272 5.50262 5.59054 5.68391
5.86502 5.93910 5.99503 6.07663 6.15061 6.32836 6.33797 6.44808
6.49967 6.61159 6.74157 6.78397 6.87677 6.93122 6.95554 7.17590
7.44275 7.58033 7.67328 8.19728 8.31486 9.08805 9.71873 10.29419
11.15900
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.012144 B = 0.003562 C = 0.002936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2305.181331 B = 7858.600080 C = 9535.833599
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.104 4.104
3 C 0.136 3.864
4 N -0.710 5.710
5 C 0.522 3.478
6 O -0.534 6.534
7 C 0.085 3.915
8 H 0.113 0.887
9 C -0.116 4.116
10 C -0.597 4.597
11 S 2.578 3.422
12 O -0.953 6.953
13 O -0.960 6.960
14 N -1.081 6.081
15 C -0.095 4.095
16 C -0.135 4.135
17 C 0.143 3.857
18 N -0.589 5.589
19 C -0.248 4.248
20 H 0.065 0.935
21 C 0.004 3.996
22 N -0.904 5.904
23 Si 0.897 3.103
24 H -0.291 1.291
25 H -0.283 1.283
26 H -0.283 1.283
27 C 0.185 3.815
28 H 0.044 0.956
29 H 0.036 0.964
30 H 0.072 0.928
31 H 0.066 0.934
32 H 0.061 0.939
33 H 0.408 0.592
34 H 0.121 0.879
35 H 0.100 0.900
36 H 0.144 0.856
37 H 0.145 0.855
38 H 0.440 0.560
39 H 0.047 0.953
40 H 0.056 0.944
41 H 0.062 0.938
42 H 0.049 0.951
43 H 0.017 0.983
44 H 0.052 0.948
45 H 0.253 0.747
46 H 0.088 0.912
47 H 0.018 0.982
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.336 8.699 -2.216 9.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.106 4.106
3 C 0.012 3.988
4 N -0.362 5.362
5 C 0.305 3.695
6 O -0.411 6.411
7 C -0.028 4.028
8 H 0.131 0.869
9 C -0.157 4.157
10 C -0.728 4.728
11 S 2.672 3.328
12 O -0.942 6.942
13 O -0.950 6.950
14 N -0.849 5.849
15 C -0.133 4.133
16 C -0.174 4.174
17 C 0.016 3.984
18 N -0.311 5.311
19 C -0.378 4.378
20 H 0.082 0.918
21 C -0.195 4.195
22 N -0.549 5.549
23 Si 0.727 3.273
24 H -0.216 1.216
25 H -0.210 1.210
26 H -0.209 1.209
27 C 0.059 3.941
28 H 0.063 0.937
29 H 0.055 0.945
30 H 0.091 0.909
31 H 0.084 0.916
32 H 0.080 0.920
33 H 0.245 0.755
34 H 0.139 0.861
35 H 0.119 0.881
36 H 0.163 0.837
37 H 0.164 0.836
38 H 0.282 0.718
39 H 0.066 0.934
40 H 0.074 0.926
41 H 0.081 0.919
42 H 0.068 0.932
43 H 0.035 0.965
44 H 0.071 0.929
45 H 0.063 0.937
46 H 0.106 0.894
47 H 0.036 0.964
Dipole moment (debyes) X Y Z Total
from point charges -1.129 10.077 -2.306 10.399
hybrid contribution -0.513 -1.022 0.736 1.360
sum -1.642 9.056 -1.570 9.336
Atomic orbital electron populations
1.21730 0.94420 1.02758 0.99475 1.21558 0.96543 0.92576 0.99910
1.21440 0.99022 0.92130 0.86222 1.46079 1.52928 1.11203 1.26028
1.19873 0.80801 0.82302 0.86514 1.90704 1.37730 1.66194 1.46468
1.22026 1.01796 0.83079 0.95859 0.86893 1.22443 1.02149 1.01180
0.89882 1.30742 1.13710 1.17755 1.10597 1.06153 0.75309 0.75636
0.75707 1.93657 1.31441 1.84396 1.84751 1.93610 1.64138 1.51968
1.85264 1.55319 1.92068 1.11929 1.25583 1.21342 0.99954 0.96041
0.95972 1.22119 1.00977 0.95649 0.98687 1.21029 0.96355 0.94242
0.86743 1.43993 1.65160 1.05505 1.16400 1.19151 1.17832 1.14976
0.85827 0.91758 1.24982 0.96998 1.00696 0.96795 1.70042 1.27322
1.38720 1.18768 0.86447 0.81451 0.78374 0.80997 1.21647 1.20999
1.20909 1.20796 0.96221 0.83854 0.93234 0.93664 0.94472 0.90887
0.91594 0.92049 0.75502 0.86103 0.88097 0.83731 0.83647 0.71757
0.93378 0.92551 0.91912 0.93213 0.96486 0.92899 0.93668 0.89364
0.96409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.95 7.81 37.16 0.29 -1.65 16
2 C -0.10 -1.64 0.53 -154.39 -0.08 -1.72 16
3 C 0.14 1.98 4.57 -4.04 -0.02 1.96 16
4 N -0.71 -9.58 4.99 -60.29 -0.30 -9.88 16
5 C 0.52 7.02 7.09 -10.99 -0.08 6.94 16
6 O -0.53 -8.81 16.28 5.55 0.09 -8.72 16
7 C 0.08 0.88 3.29 -67.69 -0.22 0.66 16
8 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16
9 C -0.12 -1.04 6.12 -25.14 -0.15 -1.19 16
10 C -0.60 -4.28 7.49 38.17 0.29 -3.99 16
11 S 2.58 26.35 6.40 -107.50 -0.69 25.66 16
12 O -0.95 -12.59 18.14 -57.42 -1.04 -13.63 16
13 O -0.96 -13.04 18.14 -57.42 -1.04 -14.08 16
14 N -1.08 -11.50 6.62 -4.53 -0.03 -11.53 16
15 C -0.09 -1.42 4.71 -26.69 -0.13 -1.54 16
16 C -0.14 -2.10 5.75 -26.38 -0.15 -2.25 16
17 C 0.14 2.72 6.54 -3.48 -0.02 2.70 16
18 N -0.59 -13.01 2.43 -172.05 -0.42 -13.43 16
19 C -0.25 -6.12 9.58 -15.06 -0.14 -6.27 16
20 H 0.06 1.59 7.89 -52.49 -0.41 1.17 16
21 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16
22 N -0.90 -23.11 11.19 55.49 0.62 -22.49 16
23 Si 0.90 19.70 29.59 -169.99 -5.03 14.67 16
24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16
25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
27 C 0.19 3.73 3.72 -3.71 -0.01 3.71 16
28 H 0.04 0.68 6.87 -51.93 -0.36 0.32 16
29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.07 1.26 5.97 -51.93 -0.31 0.95 16
31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.41 5.31 6.22 -40.82 -0.25 5.06 16
34 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16
35 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16
36 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16
37 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16
38 H 0.44 4.68 8.53 -40.75 -0.35 4.33 16
39 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16
40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
41 H 0.06 0.99 6.33 -51.93 -0.33 0.66 16
42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16
44 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16
45 H 0.25 6.29 8.31 -40.82 -0.34 5.95 16
46 H 0.09 1.90 4.94 -51.93 -0.26 1.65 16
47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
LS Contribution 376.03 15.07 5.67 5.67
Total: -1.00 -33.13 376.03 -10.00 -43.13
By element:
Atomic # 1 Polarization: 14.59 SS G_CDS: -7.31 Total: 7.28 kcal
Atomic # 6 Polarization: -2.12 SS G_CDS: -0.52 Total: -2.65 kcal
Atomic # 7 Polarization: -57.20 SS G_CDS: -0.13 Total: -57.33 kcal
Atomic # 8 Polarization: -34.44 SS G_CDS: -1.99 Total: -36.43 kcal
Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal
Atomic # 16 Polarization: 26.35 SS G_CDS: -0.69 Total: 25.66 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -33.13 -10.00 -43.13 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484176656.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.290 kcal
(2) G-P(sol) polarization free energy of solvation -33.125 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.416 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds