Wall clock time and date at job start Wed Apr 1 2020 02:58:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53002 * 109.50188 * 2 1
4 4 N 1.46498 * 109.46942 * 60.06037 * 3 2 1
5 5 C 1.34771 * 120.00160 * 180.02562 * 4 3 2
6 6 O 1.21287 * 120.00055 * 0.02562 * 5 4 3
7 7 C 1.50704 * 120.00404 * 180.02562 * 5 4 3
8 8 H 1.09007 * 109.75172 * 319.27172 * 7 5 4
9 9 C 1.54107 * 109.76638 * 79.99365 * 7 5 4
10 10 C 1.54920 * 105.89717 * 165.31685 * 9 7 5
11 11 S 1.83181 * 102.71047 * 334.83666 * 10 9 7
12 12 O 1.42095 * 111.27695 * 111.02869 * 11 10 9
13 13 O 1.42107 * 111.27230 * 250.22306 * 11 10 9
14 14 N 1.47984 * 109.76452 * 198.54267 * 7 5 4
15 15 C 1.53041 * 109.50028 * 239.90201 * 2 1 3
16 16 C 1.53038 * 109.53719 * 301.41770 * 15 2 1
17 17 C 1.53631 * 109.24213 * 298.50741 * 16 15 2
18 18 N 1.46923 * 108.54036 * 54.85570 * 17 16 15
19 19 C 1.36940 * 120.62812 * 126.37121 * 18 17 16
20 20 H 1.07996 * 119.99628 * 332.04078 * 19 18 17
21 21 C 1.38808 * 119.99786 * 152.04325 * 19 18 17
22 22 N 1.31621 * 119.99993 * 342.64203 * 21 19 18
23 23 Si 1.86803 * 120.00030 * 162.64367 * 21 19 18
24 24 H 1.48493 * 109.47189 * 179.97438 * 23 21 19
25 25 H 1.48496 * 109.47080 * 299.99782 * 23 21 19
26 26 H 1.48506 * 109.47106 * 59.99619 * 23 21 19
27 27 C 1.46928 * 118.74171 * 306.09682 * 18 17 16
28 28 H 1.09001 * 109.47119 * 299.93735 * 1 2 3
29 29 H 1.09004 * 109.46982 * 59.93409 * 1 2 3
30 30 H 1.09001 * 109.47425 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47456 * 180.02562 * 3 2 1
32 32 H 1.09007 * 109.46877 * 300.06619 * 3 2 1
33 33 H 0.97004 * 120.00270 * 0.02562 * 4 3 2
34 34 H 1.08996 * 110.17001 * 284.42476 * 9 7 5
35 35 H 1.09000 * 110.16747 * 46.21215 * 9 7 5
36 36 H 1.09007 * 110.76401 * 93.13644 * 10 9 7
37 37 H 1.08997 * 110.76683 * 216.53392 * 10 9 7
38 38 H 0.96999 * 127.77207 * 16.16955 * 14 7 5
39 39 H 1.09010 * 109.46048 * 61.43469 * 15 2 1
40 40 H 1.08997 * 109.46401 * 181.40478 * 15 2 1
41 41 H 1.08994 * 109.50474 * 58.58488 * 16 15 2
42 42 H 1.09005 * 109.49773 * 178.68222 * 16 15 2
43 43 H 1.09000 * 109.73449 * 295.11703 * 17 16 15
44 44 H 1.08998 * 109.66186 * 174.55352 * 17 16 15
45 45 H 0.97002 * 119.99607 * 180.02562 * 22 21 19
46 46 H 1.08999 * 109.58917 * 173.65023 * 27 18 17
47 47 H 1.09003 * 109.58668 * 293.93191 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0407 1.4422 0.0000
4 7 1.5539 2.1326 1.1969
5 6 1.8800 3.4228 1.4101
6 8 2.5760 4.0125 0.6108
7 6 1.3797 4.1329 2.6416
8 1 0.3441 3.8520 2.8338
9 6 2.2553 3.7559 3.8525
10 6 1.9225 4.7914 4.9556
11 16 1.3341 6.2331 3.9908
12 8 -0.0578 6.4470 4.1804
13 8 2.2680 7.3031 4.0413
14 7 1.4735 5.5970 2.4479
15 6 2.0408 -0.7234 -1.2481
16 6 1.5030 -2.1561 -1.2654
17 6 2.0188 -2.9055 -0.0275
18 7 1.6515 -2.1379 1.1702
19 6 0.9639 -2.7308 2.1952
20 1 0.3080 -3.5649 1.9940
21 6 1.1099 -2.2598 3.4928
22 7 2.1347 -1.4947 3.8037
23 14 -0.1480 -2.7120 4.7977
24 1 0.2333 -2.0881 6.0901
25 1 -1.4872 -2.2197 4.3859
26 1 -0.1900 -4.1882 4.9544
27 6 2.0412 -0.7235 1.2498
28 1 -0.3633 0.5129 0.8905
29 1 -0.3633 0.5149 -0.8894
30 1 -0.3634 -1.0277 -0.0005
31 1 3.1307 1.4417 -0.0005
32 1 1.6767 1.9566 -0.8895
33 1 0.9969 1.6612 1.8360
34 1 2.0104 2.7504 4.1948
35 1 3.3106 3.8163 3.5865
36 1 1.1357 4.4182 5.6113
37 1 2.8146 5.0472 5.5273
38 1 1.5903 6.0798 1.6148
39 1 1.6988 -0.1964 -2.1389
40 1 3.1305 -0.7450 -1.2350
41 1 0.4133 -2.1359 -1.2535
42 1 1.8481 -2.6634 -2.1664
43 1 3.1032 -3.0024 -0.0812
44 1 1.5635 -3.8948 0.0186
45 1 2.2369 -1.1658 4.7106
46 1 1.6007 -0.2725 2.1390
47 1 3.1273 -0.6460 1.3008
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484176656.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:58:57
Heat of formation + Delta-G solvation = -109.027932 kcal
Electronic energy + Delta-G solvation = -29983.888726 eV
Core-core repulsion = 25907.236475 eV
Total energy + Delta-G solvation = -4076.652251 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.156 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.27597 -39.93353 -38.21022 -37.50168 -36.98110 -36.28169 -34.87452 -32.99804
-32.61263 -31.57780 -28.76660 -27.84061 -27.15432 -26.26975 -23.98520 -23.57439
-22.11447 -21.49433 -20.63510 -19.66341 -19.01139 -18.46268 -18.13679 -17.50771
-17.12247 -16.78537 -16.56338 -16.17708 -16.00623 -15.66989 -15.38363 -15.21268
-15.09615 -14.76273 -14.48134 -14.31921 -14.28091 -13.83750 -13.74540 -13.44037
-13.29294 -13.13782 -13.04730 -12.98931 -12.97546 -12.66623 -12.51449 -12.37848
-12.23238 -12.12846 -11.81117 -11.68376 -11.60518 -11.37559 -11.25347 -10.96539
-10.92754 -10.60264 -10.44306 -10.05909 -8.55748 -7.78108 -5.21988 -0.77750
1.37799 1.53157 1.56192 1.56394 1.61377 2.16040 2.58238 2.62618
2.98427 3.33662 3.34132 3.41879 3.64980 3.74648 3.86074 3.99880
4.06322 4.08671 4.12631 4.24704 4.39725 4.54746 4.60089 4.69998
4.77300 4.78554 4.82295 4.85092 4.89372 5.02103 5.08430 5.15964
5.21303 5.31499 5.37279 5.44261 5.49938 5.55218 5.68991 5.78110
5.84136 6.06736 6.48804 6.49420 7.12114 7.25428 7.94891 8.47943
9.27372
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.012144 B = 0.003562 C = 0.002936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2305.181331 B = 7858.600080 C = 9535.833599
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.092 4.092
3 C 0.142 3.858
4 N -0.708 5.708
5 C 0.523 3.477
6 O -0.567 6.567
7 C 0.083 3.917
8 H 0.138 0.862
9 C -0.120 4.120
10 C -0.567 4.567
11 S 2.585 3.415
12 O -0.986 6.986
13 O -0.998 6.998
14 N -1.086 6.086
15 C -0.095 4.095
16 C -0.124 4.124
17 C 0.136 3.864
18 N -0.604 5.604
19 C -0.260 4.260
20 H 0.058 0.942
21 C -0.035 4.035
22 N -0.926 5.926
23 Si 0.953 3.047
24 H -0.292 1.292
25 H -0.277 1.277
26 H -0.289 1.289
27 C 0.196 3.804
28 H 0.045 0.955
29 H 0.060 0.940
30 H 0.053 0.947
31 H 0.053 0.947
32 H 0.073 0.927
33 H 0.412 0.588
34 H 0.131 0.869
35 H 0.096 0.904
36 H 0.173 0.827
37 H 0.169 0.831
38 H 0.439 0.561
39 H 0.076 0.924
40 H 0.051 0.949
41 H 0.063 0.937
42 H 0.075 0.925
43 H 0.007 0.993
44 H 0.048 0.952
45 H 0.252 0.748
46 H 0.073 0.927
47 H -0.016 1.016
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.329 8.588 -2.261 9.181
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.094 4.094
3 C 0.018 3.982
4 N -0.360 5.360
5 C 0.307 3.693
6 O -0.446 6.446
7 C -0.029 4.029
8 H 0.156 0.844
9 C -0.160 4.160
10 C -0.700 4.700
11 S 2.683 3.317
12 O -0.975 6.975
13 O -0.988 6.988
14 N -0.852 5.852
15 C -0.133 4.133
16 C -0.162 4.162
17 C 0.010 3.990
18 N -0.326 5.326
19 C -0.390 4.390
20 H 0.076 0.924
21 C -0.231 4.231
22 N -0.572 5.572
23 Si 0.782 3.218
24 H -0.218 1.218
25 H -0.203 1.203
26 H -0.215 1.215
27 C 0.070 3.930
28 H 0.064 0.936
29 H 0.079 0.921
30 H 0.072 0.928
31 H 0.071 0.929
32 H 0.091 0.909
33 H 0.249 0.751
34 H 0.149 0.851
35 H 0.114 0.886
36 H 0.191 0.809
37 H 0.187 0.813
38 H 0.280 0.720
39 H 0.094 0.906
40 H 0.070 0.930
41 H 0.082 0.918
42 H 0.094 0.906
43 H 0.025 0.975
44 H 0.067 0.933
45 H 0.061 0.939
46 H 0.091 0.909
47 H 0.002 0.998
Dipole moment (debyes) X Y Z Total
from point charges -2.146 9.983 -2.384 10.485
hybrid contribution -0.134 -1.112 0.736 1.340
sum -2.280 8.871 -1.647 9.306
Atomic orbital electron populations
1.21654 0.93548 1.01852 1.00696 1.21360 0.97017 0.92819 0.98210
1.21303 0.98269 0.91463 0.87193 1.46061 1.52803 1.11343 1.25791
1.20328 0.79985 0.81988 0.86969 1.90689 1.39227 1.66832 1.47885
1.22228 1.03363 0.82456 0.94870 0.84431 1.22512 1.01683 1.02087
0.89726 1.30614 1.15463 1.14138 1.09829 1.05814 0.74156 0.76141
0.75609 1.93612 1.33244 1.85524 1.85164 1.93559 1.64741 1.54693
1.85824 1.55309 1.92119 1.12106 1.25713 1.21370 0.99705 0.95794
0.96452 1.21990 1.00900 0.95728 0.97621 1.21175 0.95823 0.94541
0.87449 1.44225 1.65139 1.06537 1.16732 1.19367 1.17875 1.14949
0.86820 0.92380 1.25522 0.98321 1.01116 0.98179 1.70158 1.28455
1.39668 1.18936 0.85583 0.79841 0.77509 0.78860 1.21750 1.20302
1.21534 1.20604 0.94005 0.83482 0.94883 0.93585 0.92124 0.92778
0.92900 0.90895 0.75108 0.85118 0.88554 0.80912 0.81302 0.71996
0.90585 0.93050 0.91788 0.90610 0.97518 0.93328 0.93854 0.90888
0.99813
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.45 7.81 71.98 0.56 -2.89 16
2 C -0.09 -2.80 0.53 -52.10 -0.03 -2.83 16
3 C 0.14 3.98 4.57 86.38 0.39 4.38 16
4 N -0.71 -18.35 4.99 -463.05 -2.31 -20.66 16
5 C 0.52 13.56 7.09 87.66 0.62 14.18 16
6 O -0.57 -18.49 16.28 -3.05 -0.05 -18.54 16
7 C 0.08 1.59 3.29 44.34 0.15 1.74 16
8 H 0.14 1.97 8.14 -2.38 -0.02 1.95 16
9 C -0.12 -1.87 6.12 31.63 0.19 -1.68 16
10 C -0.57 -6.44 7.49 72.64 0.54 -5.90 16
11 S 2.58 50.34 6.40 -56.49 -0.36 49.98 16
12 O -0.99 -25.27 18.14 -127.76 -2.32 -27.59 16
13 O -1.00 -26.97 18.14 -127.76 -2.32 -29.29 16
14 N -1.09 -22.33 6.62 -168.25 -1.11 -23.45 16
15 C -0.10 -2.64 4.71 30.62 0.14 -2.50 16
16 C -0.12 -3.60 5.75 30.82 0.18 -3.42 16
17 C 0.14 5.14 6.54 86.51 0.57 5.71 16
18 N -0.60 -26.80 2.43 -698.25 -1.69 -28.50 16
19 C -0.26 -12.86 9.58 84.03 0.81 -12.05 16
20 H 0.06 2.88 7.89 -2.91 -0.02 2.86 16
21 C -0.04 -1.74 4.91 84.86 0.42 -1.32 16
22 N -0.93 -47.52 11.19 21.65 0.24 -47.28 16
23 Si 0.95 40.12 29.59 68.60 2.03 42.15 16
24 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16
25 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16
26 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16
27 C 0.20 7.93 3.72 86.36 0.32 8.25 16
28 H 0.05 1.29 6.87 -2.39 -0.02 1.28 16
29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
30 H 0.05 1.78 5.97 -2.39 -0.01 1.77 16
31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
32 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16
33 H 0.41 10.22 6.22 -92.71 -0.58 9.65 16
34 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16
35 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16
36 H 0.17 1.13 8.14 -2.38 -0.02 1.11 16
37 H 0.17 1.28 8.14 -2.39 -0.02 1.26 16
38 H 0.44 9.34 8.53 -92.75 -0.79 8.55 16
39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16
40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
41 H 0.06 1.88 6.33 -2.39 -0.02 1.86 16
42 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16
43 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16
44 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16
45 H 0.25 12.48 8.31 -92.71 -0.77 11.70 16
46 H 0.07 3.16 4.94 -2.39 -0.01 3.15 16
47 H -0.02 -0.75 8.14 -2.39 -0.02 -0.77 16
Total: -1.00 -71.97 376.03 -3.40 -75.36
By element:
Atomic # 1 Polarization: 26.50 SS G_CDS: -0.37 Total: 26.13 kcal
Atomic # 6 Polarization: -3.20 SS G_CDS: 4.87 Total: 1.67 kcal
Atomic # 7 Polarization: -115.01 SS G_CDS: -4.88 Total: -119.88 kcal
Atomic # 8 Polarization: -70.73 SS G_CDS: -4.68 Total: -75.41 kcal
Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal
Atomic # 16 Polarization: 50.34 SS G_CDS: -0.36 Total: 49.98 kcal
Total: -71.97 -3.40 -75.36 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484176656.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.663 kcal
(2) G-P(sol) polarization free energy of solvation -71.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.628 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.400 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.365 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.028 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds