Wall clock time and date at job start Wed Apr 1 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46197 * 2 1 4 4 C 1.36935 * 120.00142 * 60.02254 * 3 2 1 5 5 H 1.07998 * 120.00112 * 359.97438 * 4 3 2 6 6 C 1.38810 * 119.99594 * 180.02562 * 4 3 2 7 7 N 1.31614 * 120.00462 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99608 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46928 * 270.00169 * 8 6 4 10 10 H 1.48497 * 109.47342 * 30.00087 * 8 6 4 11 11 H 1.48500 * 109.46901 * 150.00213 * 8 6 4 12 12 C 1.53052 * 109.44520 * 119.96140 * 2 1 3 13 13 C 1.53191 * 109.31115 * 181.38088 * 12 2 1 14 14 N 1.46931 * 108.77264 * 305.36290 * 13 12 2 15 15 C 1.34779 * 120.63092 * 233.58595 * 14 13 12 16 16 O 1.21486 * 120.00199 * 173.20154 * 15 14 13 17 17 C 1.48347 * 119.99778 * 353.20733 * 15 14 13 18 18 C 1.41715 * 126.80839 * 173.03949 * 17 15 14 19 19 C 1.37155 * 103.79546 * 179.90851 * 18 17 15 20 20 C 1.47009 * 126.86045 * 180.12851 * 19 18 17 21 21 C 1.36342 * 125.96552 * 180.28434 * 20 19 18 22 22 C 1.40702 * 106.72025 * 179.97438 * 21 20 19 23 23 C 1.34888 * 107.08195 * 359.97438 * 22 21 20 24 24 O 1.34229 * 108.72992 * 359.75908 * 23 22 21 25 25 O 1.34579 * 106.28183 * 0.34721 * 19 18 17 26 26 N 1.20874 * 111.69383 * 359.76210 * 25 19 18 27 27 C 1.46927 * 118.73799 * 53.61465 * 14 13 12 28 28 C 1.53035 * 109.46172 * 240.02044 * 2 1 3 29 29 H 1.08999 * 109.46808 * 60.00368 * 1 2 3 30 30 H 1.08994 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47227 * 300.00991 * 1 2 3 32 32 H 0.96996 * 119.99038 * 240.02546 * 3 2 1 33 33 H 0.97001 * 119.99667 * 359.97438 * 7 6 4 34 34 H 1.08995 * 109.49698 * 301.32915 * 12 2 1 35 35 H 1.08995 * 109.49772 * 61.42528 * 12 2 1 36 36 H 1.08995 * 109.58457 * 185.58105 * 13 12 2 37 37 H 1.09000 * 109.58827 * 65.15057 * 13 12 2 38 38 H 1.07999 * 128.10557 * 0.04342 * 18 17 15 39 39 H 1.08005 * 126.64005 * 359.95459 * 21 20 19 40 40 H 1.07998 * 126.45901 * 179.97438 * 22 21 20 41 41 H 1.07999 * 125.63461 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.58417 * 186.60042 * 27 14 13 43 43 H 1.08994 * 109.58765 * 66.17430 * 27 14 13 44 44 H 1.08994 * 109.49807 * 298.57990 * 28 2 1 45 45 H 1.08996 * 109.49839 * 58.65072 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6876 2.2243 1.0272 5 1 1.0667 1.8711 1.8372 6 6 2.1497 3.5333 1.0268 7 7 2.9051 3.9643 0.0390 8 14 1.6982 4.6835 2.4278 9 1 0.4350 5.3917 2.0992 10 1 1.5151 3.8974 3.6743 11 1 2.7856 5.6757 2.6236 12 6 2.0395 -0.7208 1.2504 13 6 3.5710 -0.6889 1.2648 14 7 4.0676 -1.2494 0.0006 15 6 4.9616 -2.2580 0.0009 16 8 5.2713 -2.7955 -1.0437 17 6 5.5674 -2.7119 1.2767 18 6 6.4091 -3.8365 1.4643 19 6 6.6923 -3.8128 2.8060 20 6 7.5363 -4.7622 3.5460 21 6 7.8014 -4.7243 4.8829 22 6 8.6453 -5.8158 5.1592 23 6 8.8529 -6.4613 3.9932 24 8 8.1775 -5.8260 3.0226 25 8 6.0394 -2.7497 3.3108 26 7 5.4256 -2.1552 2.4559 27 6 3.5714 -0.6891 -1.2638 28 6 2.0399 -0.7210 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.5754 1.6986 -0.7277 33 1 3.1392 3.3671 -0.6886 34 1 1.6569 -0.2205 2.1399 35 1 1.6972 -1.7555 1.2387 36 1 3.9410 -1.2848 2.0990 37 1 3.9141 0.3406 1.3678 38 1 6.7497 -4.5449 0.7237 39 1 7.4350 -3.9971 5.5924 40 1 9.0504 -6.0858 6.1232 41 1 9.4586 -7.3459 3.8628 42 1 3.9418 -1.2853 -2.0978 43 1 3.9146 0.3402 -1.3669 44 1 1.6977 -1.7558 -1.2380 45 1 1.6571 -0.2214 -2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484922864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:17 Heat of formation + Delta-G solvation = 80.450382 kcal Electronic energy + Delta-G solvation = -30331.349017 eV Core-core repulsion = 26127.469212 eV Total energy + Delta-G solvation = -4203.879806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.28898 -42.98754 -40.07166 -37.95763 -34.83819 -34.30146 -33.75765 -33.06793 -32.48528 -30.80061 -29.16154 -28.80885 -27.89927 -25.24318 -23.83953 -23.70581 -22.88832 -22.84639 -21.89569 -21.58894 -19.95082 -18.99919 -18.12149 -18.03334 -17.31404 -17.02382 -16.65739 -16.45164 -15.84378 -15.36729 -15.16632 -14.66726 -14.27454 -14.15416 -13.69986 -13.60170 -13.55517 -13.39022 -13.22745 -13.15721 -12.90995 -12.63911 -12.37206 -11.71601 -11.60785 -11.40147 -11.29413 -10.92130 -10.80528 -10.77183 -10.69877 -10.47995 -10.34200 -10.29865 -10.01745 -9.99857 -9.76363 -9.09942 -8.94671 -8.57863 -8.39021 -7.03793 -6.08928 -3.09538 0.30334 1.13761 1.65726 1.75481 2.33977 2.86665 3.11920 3.29765 3.51170 3.55201 3.69100 3.74821 4.00110 4.46257 4.49906 4.60618 4.65779 4.74999 4.93589 5.20859 5.26072 5.29073 5.32924 5.37754 5.48414 5.49791 5.56201 5.62905 5.71050 5.73163 5.93575 5.95733 5.97051 6.13442 6.15890 6.29379 6.40677 6.44553 6.50832 6.52379 6.61963 6.78026 6.93362 6.98756 7.47385 7.73476 7.82215 8.10864 8.75579 9.21652 10.08336 10.23864 11.38924 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.002722 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.274878 B =10284.197622 C =11412.007095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.201 3.799 3 N -0.728 5.728 4 C -0.322 4.322 5 H 0.065 0.935 6 C -0.045 4.045 7 N -0.945 5.945 8 Si 1.078 2.922 9 H -0.297 1.297 10 H -0.295 1.295 11 H -0.289 1.289 12 C -0.131 4.131 13 C 0.097 3.903 14 N -0.581 5.581 15 C 0.592 3.408 16 O -0.536 6.536 17 C -0.010 4.010 18 C -0.151 4.151 19 C 0.033 3.967 20 C 0.044 3.956 21 C -0.157 4.157 22 C -0.214 4.214 23 C -0.016 4.016 24 O -0.159 6.159 25 O 0.137 5.863 26 N -0.308 5.308 27 C 0.117 3.883 28 C -0.131 4.131 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.186 0.814 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.213 0.787 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -21.380 7.643 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.110 3.890 3 N -0.371 5.371 4 C -0.453 4.453 5 H 0.083 0.917 6 C -0.242 4.242 7 N -0.591 5.591 8 Si 0.909 3.091 9 H -0.225 1.225 10 H -0.222 1.222 11 H -0.215 1.215 12 C -0.172 4.172 13 C -0.025 4.025 14 N -0.312 5.312 15 C 0.377 3.623 16 O -0.412 6.412 17 C -0.168 4.168 18 C -0.173 4.173 19 C -0.030 4.030 20 C -0.007 4.007 21 C -0.177 4.177 22 C -0.233 4.233 23 C -0.085 4.085 24 O -0.054 6.054 25 O 0.061 5.939 26 N -0.009 5.009 27 C -0.005 4.005 28 C -0.169 4.169 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.200 0.800 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.204 0.796 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.229 0.771 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.569 -19.122 7.903 22.395 hybrid contribution 0.212 -1.947 -0.877 2.146 sum 8.781 -21.069 7.026 23.882 Atomic orbital electron populations 1.22187 0.97374 0.99010 1.02185 1.19490 0.92282 0.85757 0.91468 1.42507 1.61229 1.06639 1.26751 1.19934 1.29510 0.94388 1.01437 0.91683 1.25653 0.99073 0.95981 1.03511 1.70857 1.39022 1.37951 1.11231 0.83253 0.75824 0.75690 0.74290 1.22492 1.22182 1.21538 1.22283 0.94493 0.98994 1.01403 1.22362 0.95197 1.00974 0.83956 1.48023 1.40689 1.33097 1.09378 1.16911 0.79679 0.80186 0.85555 1.90759 1.62932 1.56330 1.31199 1.23396 1.02591 0.96918 0.93857 1.22689 1.00008 0.99566 0.95078 1.20463 0.99551 0.91691 0.91321 1.18070 1.01234 0.90669 0.90733 1.22033 1.00817 1.00693 0.94167 1.21838 1.03699 0.97819 0.99914 1.24353 0.98821 0.99436 0.85876 1.84064 1.50437 1.33227 1.37700 1.85000 1.45409 1.30101 1.33396 1.74278 1.11487 1.16207 0.98922 1.21668 0.94518 0.99240 0.85065 1.22114 0.94526 1.00756 0.99520 0.93214 0.94540 0.92406 0.79973 0.93449 0.90386 0.93478 0.88276 0.89174 0.79625 0.82097 0.82490 0.77079 0.89427 0.90468 0.91618 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.44 37.16 0.31 -2.36 16 2 C 0.20 3.80 0.74 -131.77 -0.10 3.70 16 3 N -0.73 -16.76 4.13 -47.19 -0.19 -16.95 16 4 C -0.32 -8.40 8.68 -15.06 -0.13 -8.53 16 5 H 0.07 1.69 6.70 -52.49 -0.35 1.34 16 6 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 7 N -0.94 -28.41 13.70 55.49 0.76 -27.65 16 8 Si 1.08 25.55 29.92 -169.99 -5.09 20.47 16 9 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 C -0.13 -2.37 4.71 -26.61 -0.13 -2.49 16 13 C 0.10 1.76 5.87 -3.71 -0.02 1.74 16 14 N -0.58 -10.21 2.97 -173.69 -0.52 -10.72 16 15 C 0.59 10.33 7.71 -12.10 -0.09 10.24 16 16 O -0.54 -10.19 16.37 5.38 0.09 -10.11 16 17 C -0.01 -0.16 6.86 -82.66 -0.57 -0.73 16 18 C -0.15 -1.92 10.97 -38.65 -0.42 -2.34 16 19 C 0.03 0.38 7.30 -36.42 -0.27 0.12 16 20 C 0.04 0.43 7.17 -36.71 -0.26 0.17 16 21 C -0.16 -1.27 10.86 -39.33 -0.43 -1.70 16 22 C -0.21 -1.32 10.88 -39.84 -0.43 -1.75 16 23 C -0.02 -0.09 12.08 29.54 0.36 0.26 16 24 O -0.16 -1.43 10.67 4.56 0.05 -1.38 16 25 O 0.14 1.75 11.21 15.73 0.18 1.92 16 26 N -0.31 -4.61 8.62 33.36 0.29 -4.32 16 27 C 0.12 2.00 6.17 -3.71 -0.02 1.97 16 28 C -0.13 -2.15 4.96 -26.61 -0.13 -2.29 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.12 7.27 -51.93 -0.38 0.74 16 32 H 0.37 8.87 5.30 -40.82 -0.22 8.66 16 33 H 0.25 7.52 6.77 -40.82 -0.28 7.24 16 34 H 0.08 1.50 7.31 -51.93 -0.38 1.12 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.70 4.19 -57.27 -0.24 1.46 16 37 H 0.09 1.93 7.74 -51.93 -0.40 1.52 16 38 H 0.19 2.05 8.06 -52.49 -0.42 1.62 16 39 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.21 0.35 8.06 -52.49 -0.42 -0.08 16 42 H 0.09 1.44 7.00 -51.93 -0.36 1.07 16 43 H 0.08 1.42 6.94 -51.93 -0.36 1.06 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -32.06 369.95 -6.86 -38.91 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.57 Total: 9.58 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.43 Total: -5.33 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.34 Total: -59.64 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.31 Total: -9.56 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.09 Total: 20.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.06 -6.86 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484922864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.365 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds