Wall clock time and date at job start Wed Apr 1 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46197 * 2 1 4 4 C 1.36935 * 120.00142 * 60.02254 * 3 2 1 5 5 H 1.07998 * 120.00112 * 359.97438 * 4 3 2 6 6 C 1.38810 * 119.99594 * 180.02562 * 4 3 2 7 7 N 1.31614 * 120.00462 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99608 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46928 * 270.00169 * 8 6 4 10 10 H 1.48497 * 109.47342 * 30.00087 * 8 6 4 11 11 H 1.48500 * 109.46901 * 150.00213 * 8 6 4 12 12 C 1.53052 * 109.44520 * 119.96140 * 2 1 3 13 13 C 1.53191 * 109.31115 * 181.38088 * 12 2 1 14 14 N 1.46931 * 108.77264 * 305.36290 * 13 12 2 15 15 C 1.34779 * 120.63092 * 233.58595 * 14 13 12 16 16 O 1.21486 * 120.00199 * 173.20154 * 15 14 13 17 17 C 1.48347 * 119.99778 * 353.20733 * 15 14 13 18 18 C 1.41715 * 126.80839 * 173.03949 * 17 15 14 19 19 C 1.37155 * 103.79546 * 179.90851 * 18 17 15 20 20 C 1.47009 * 126.86045 * 180.12851 * 19 18 17 21 21 C 1.36342 * 125.96552 * 180.28434 * 20 19 18 22 22 C 1.40702 * 106.72025 * 179.97438 * 21 20 19 23 23 C 1.34888 * 107.08195 * 359.97438 * 22 21 20 24 24 O 1.34229 * 108.72992 * 359.75908 * 23 22 21 25 25 O 1.34579 * 106.28183 * 0.34721 * 19 18 17 26 26 N 1.20874 * 111.69383 * 359.76210 * 25 19 18 27 27 C 1.46927 * 118.73799 * 53.61465 * 14 13 12 28 28 C 1.53035 * 109.46172 * 240.02044 * 2 1 3 29 29 H 1.08999 * 109.46808 * 60.00368 * 1 2 3 30 30 H 1.08994 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47227 * 300.00991 * 1 2 3 32 32 H 0.96996 * 119.99038 * 240.02546 * 3 2 1 33 33 H 0.97001 * 119.99667 * 359.97438 * 7 6 4 34 34 H 1.08995 * 109.49698 * 301.32915 * 12 2 1 35 35 H 1.08995 * 109.49772 * 61.42528 * 12 2 1 36 36 H 1.08995 * 109.58457 * 185.58105 * 13 12 2 37 37 H 1.09000 * 109.58827 * 65.15057 * 13 12 2 38 38 H 1.07999 * 128.10557 * 0.04342 * 18 17 15 39 39 H 1.08005 * 126.64005 * 359.95459 * 21 20 19 40 40 H 1.07998 * 126.45901 * 179.97438 * 22 21 20 41 41 H 1.07999 * 125.63461 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.58417 * 186.60042 * 27 14 13 43 43 H 1.08994 * 109.58765 * 66.17430 * 27 14 13 44 44 H 1.08994 * 109.49807 * 298.57990 * 28 2 1 45 45 H 1.08996 * 109.49839 * 58.65072 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6876 2.2243 1.0272 5 1 1.0667 1.8711 1.8372 6 6 2.1497 3.5333 1.0268 7 7 2.9051 3.9643 0.0390 8 14 1.6982 4.6835 2.4278 9 1 0.4350 5.3917 2.0992 10 1 1.5151 3.8974 3.6743 11 1 2.7856 5.6757 2.6236 12 6 2.0395 -0.7208 1.2504 13 6 3.5710 -0.6889 1.2648 14 7 4.0676 -1.2494 0.0006 15 6 4.9616 -2.2580 0.0009 16 8 5.2713 -2.7955 -1.0437 17 6 5.5674 -2.7119 1.2767 18 6 6.4091 -3.8365 1.4643 19 6 6.6923 -3.8128 2.8060 20 6 7.5363 -4.7622 3.5460 21 6 7.8014 -4.7243 4.8829 22 6 8.6453 -5.8158 5.1592 23 6 8.8529 -6.4613 3.9932 24 8 8.1775 -5.8260 3.0226 25 8 6.0394 -2.7497 3.3108 26 7 5.4256 -2.1552 2.4559 27 6 3.5714 -0.6891 -1.2638 28 6 2.0399 -0.7210 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.5754 1.6986 -0.7277 33 1 3.1392 3.3671 -0.6886 34 1 1.6569 -0.2205 2.1399 35 1 1.6972 -1.7555 1.2387 36 1 3.9410 -1.2848 2.0990 37 1 3.9141 0.3406 1.3678 38 1 6.7497 -4.5449 0.7237 39 1 7.4350 -3.9971 5.5924 40 1 9.0504 -6.0858 6.1232 41 1 9.4586 -7.3459 3.8628 42 1 3.9418 -1.2853 -2.0978 43 1 3.9146 0.3402 -1.3669 44 1 1.6977 -1.7558 -1.2380 45 1 1.6571 -0.2214 -2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484922864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:16 Heat of formation + Delta-G solvation = 61.289724 kcal Electronic energy + Delta-G solvation = -30332.179886 eV Core-core repulsion = 26127.469212 eV Total energy + Delta-G solvation = -4204.710674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -46.35733 -43.56225 -41.49952 -39.46926 -36.42272 -35.44009 -34.62499 -34.33065 -33.71110 -32.20543 -30.64989 -29.86865 -29.39578 -26.53058 -25.63343 -24.84032 -24.24633 -24.03394 -22.79911 -22.36674 -21.11339 -20.19085 -19.37895 -19.19144 -18.86239 -18.47852 -17.52640 -17.22552 -17.08749 -16.93813 -16.33058 -15.97914 -15.84935 -15.40094 -15.21635 -15.14351 -14.93682 -14.63491 -14.26761 -13.92298 -13.90138 -13.69038 -13.41415 -13.30659 -13.04093 -12.78842 -12.77740 -12.62477 -12.29123 -12.24330 -11.90607 -11.82581 -11.79278 -11.70860 -11.57242 -11.31054 -10.99204 -10.90286 -10.83060 -9.88551 -9.26085 -9.01881 -8.27486 -5.21068 -0.54222 0.01583 0.88885 1.12140 1.56605 1.58782 1.68334 1.69563 1.81412 1.82989 2.54442 2.61016 2.74396 3.06366 3.48540 3.55230 3.58365 3.65258 3.83083 3.92519 3.92912 3.99509 4.01809 4.17903 4.20844 4.29931 4.47380 4.53376 4.59418 4.69803 4.74433 4.77283 4.88063 4.93739 4.94415 4.96864 4.99554 5.01595 5.15084 5.21603 5.44072 5.46454 5.50642 5.73295 5.94799 6.08135 6.59278 6.59467 6.81783 7.18246 8.09083 8.21434 9.24279 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.002722 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.274878 B =10284.197622 C =11412.007095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.191 3.809 3 N -0.735 5.735 4 C -0.299 4.299 5 H 0.067 0.933 6 C -0.108 4.108 7 N -0.983 5.983 8 Si 1.120 2.880 9 H -0.290 1.290 10 H -0.273 1.273 11 H -0.301 1.301 12 C -0.125 4.125 13 C 0.108 3.892 14 N -0.584 5.584 15 C 0.592 3.408 16 O -0.554 6.554 17 C -0.029 4.029 18 C -0.162 4.162 19 C 0.055 3.945 20 C 0.002 3.998 21 C -0.147 4.147 22 C -0.225 4.225 23 C 0.002 3.998 24 O -0.174 6.174 25 O 0.145 5.855 26 N -0.330 5.330 27 C 0.118 3.882 28 C -0.121 4.121 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.358 0.642 33 H 0.243 0.757 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.051 0.949 38 H 0.199 0.801 39 H 0.171 0.829 40 H 0.184 0.816 41 H 0.254 0.746 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.446 -24.371 9.380 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.102 3.898 3 N -0.377 5.377 4 C -0.431 4.431 5 H 0.085 0.915 6 C -0.299 4.299 7 N -0.633 5.633 8 Si 0.947 3.053 9 H -0.217 1.217 10 H -0.199 1.199 11 H -0.228 1.228 12 C -0.165 4.165 13 C -0.014 4.014 14 N -0.315 5.315 15 C 0.378 3.622 16 O -0.432 6.432 17 C -0.185 4.185 18 C -0.184 4.184 19 C -0.008 4.008 20 C -0.048 4.048 21 C -0.167 4.167 22 C -0.243 4.243 23 C -0.066 4.066 24 O -0.070 6.070 25 O 0.068 5.932 26 N -0.031 5.031 27 C -0.004 4.004 28 C -0.159 4.159 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.190 0.810 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.069 0.931 38 H 0.216 0.784 39 H 0.189 0.811 40 H 0.202 0.798 41 H 0.270 0.730 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.883 -22.156 9.645 25.746 hybrid contribution 0.240 -1.254 -1.297 1.820 sum 9.123 -23.410 8.348 26.476 Atomic orbital electron populations 1.22094 0.96168 1.00765 1.01019 1.19809 0.93036 0.83867 0.93136 1.42666 1.61135 1.08171 1.25758 1.20170 1.27106 0.94352 1.01426 0.91465 1.26830 0.99779 0.98253 1.05071 1.70958 1.41822 1.38161 1.12343 0.82693 0.75302 0.74278 0.73039 1.21740 1.19857 1.22774 1.22207 0.94127 1.00023 1.00172 1.22154 0.95377 0.99024 0.84889 1.48035 1.41015 1.33262 1.09161 1.17145 0.79114 0.79719 0.86178 1.90734 1.63375 1.56950 1.32126 1.23225 1.03836 0.98203 0.93215 1.22790 1.00292 0.99390 0.95917 1.20693 0.98284 0.90827 0.91026 1.17983 1.03551 0.91974 0.91294 1.22402 0.99757 1.00944 0.93563 1.22219 1.03544 0.97169 1.01381 1.25326 0.96850 0.99330 0.85104 1.84067 1.50857 1.33194 1.38906 1.84944 1.45170 1.30369 1.32709 1.74172 1.12734 1.17065 0.99081 1.21626 0.95156 0.98220 0.85360 1.22045 0.93729 1.01607 0.98524 0.93823 0.91320 0.94092 0.80964 0.94693 0.91694 0.91060 0.86979 0.93085 0.78430 0.81115 0.79821 0.72992 0.88577 0.92554 0.89489 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 8.44 71.98 0.61 -4.27 16 2 C 0.19 7.09 0.74 3.63 0.00 7.09 16 3 N -0.73 -34.46 4.13 -303.21 -1.25 -35.71 16 4 C -0.30 -15.79 8.68 84.03 0.73 -15.06 16 5 H 0.07 3.49 6.70 -2.91 -0.02 3.47 16 6 C -0.11 -6.17 5.50 84.86 0.47 -5.70 16 7 N -0.98 -61.11 13.70 21.65 0.30 -60.81 16 8 Si 1.12 52.22 29.92 68.60 2.05 54.27 16 9 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 12 C -0.13 -4.41 4.71 30.68 0.14 -4.27 16 13 C 0.11 3.97 5.87 86.36 0.51 4.47 16 14 N -0.58 -20.71 2.97 -821.74 -2.44 -23.15 16 15 C 0.59 20.81 7.71 86.93 0.67 21.48 16 16 O -0.55 -21.10 16.37 -3.67 -0.06 -21.16 16 17 C -0.03 -0.89 6.86 42.79 0.29 -0.60 16 18 C -0.16 -4.05 10.97 22.87 0.25 -3.80 16 19 C 0.06 1.24 7.30 24.32 0.18 1.42 16 20 C 0.00 0.04 7.17 24.13 0.17 0.21 16 21 C -0.15 -2.04 10.86 22.43 0.24 -1.80 16 22 C -0.22 -1.98 10.88 22.10 0.24 -1.74 16 23 C 0.00 0.02 12.08 67.05 0.81 0.83 16 24 O -0.17 -2.75 10.67 -6.59 -0.07 -2.82 16 25 O 0.15 3.65 11.21 66.47 0.75 4.40 16 26 N -0.33 -9.93 8.62 -48.87 -0.42 -10.35 16 27 C 0.12 4.07 6.17 86.36 0.53 4.60 16 28 C -0.12 -3.85 4.96 30.67 0.15 -3.69 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.53 7.27 -2.39 -0.02 1.51 16 32 H 0.36 18.00 5.30 -92.71 -0.49 17.51 16 33 H 0.24 15.02 6.77 -92.71 -0.63 14.39 16 34 H 0.06 2.46 7.31 -2.39 -0.02 2.44 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.11 3.87 4.19 -12.93 -0.05 3.81 16 37 H 0.05 2.27 7.74 -2.39 -0.02 2.26 16 38 H 0.20 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.18 0.57 8.06 -2.91 -0.02 0.54 16 41 H 0.25 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.10 3.14 7.00 -2.39 -0.02 3.13 16 43 H 0.06 2.17 6.94 -2.39 -0.02 2.15 16 44 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -71.25 369.95 5.50 -65.75 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.65 Total: 30.41 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.00 Total: -0.83 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -3.82 Total: -130.02 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.61 Total: -19.58 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -71.25 5.50 -65.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484922864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.042 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds