Wall clock time and date at job start Wed Apr 1 2020 03:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 119.99971 * 2 1 4 4 O 1.21280 * 119.99665 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00222 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47361 * 174.65336 * 5 3 2 7 7 C 1.53002 * 108.58010 * 297.44697 * 6 5 3 8 8 C 1.53198 * 108.64785 * 179.61544 * 6 5 3 9 9 C 1.55564 * 106.24004 * 211.34002 * 8 6 5 10 10 S 1.83899 * 99.63936 * 36.98735 * 9 8 6 11 11 O 1.42103 * 111.46671 * 215.90891 * 10 9 8 12 12 O 1.42100 * 111.46501 * 75.85768 * 10 9 8 13 13 N 1.46450 * 108.64519 * 55.43967 * 6 5 3 14 14 C 1.46501 * 119.99853 * 180.02562 * 2 1 3 15 15 H 1.08997 * 110.88433 * 169.74507 * 14 2 1 16 16 C 1.55160 * 111.00515 * 45.82289 * 14 2 1 17 17 C 1.54330 * 102.93965 * 277.42610 * 16 14 2 18 18 N 1.47022 * 107.27269 * 337.80969 * 17 16 14 19 19 C 1.36931 * 125.64644 * 178.97557 * 18 17 16 20 20 H 1.08007 * 120.00087 * 174.67502 * 19 18 17 21 21 C 1.38812 * 120.00411 * 354.67290 * 19 18 17 22 22 N 1.31619 * 119.99564 * 7.10481 * 21 19 18 23 23 Si 1.86798 * 120.00299 * 187.10284 * 21 19 18 24 24 H 1.48501 * 109.47118 * 94.93501 * 23 21 19 25 25 H 1.48507 * 109.47019 * 214.93516 * 23 21 19 26 26 H 1.48499 * 109.47109 * 334.93405 * 23 21 19 27 27 C 1.47419 * 108.70225 * 358.93976 * 18 17 16 28 28 H 1.08998 * 109.46756 * 236.12596 * 1 2 3 29 29 H 1.09003 * 109.46414 * 356.12133 * 1 2 3 30 30 H 1.08998 * 109.47317 * 116.12118 * 1 2 3 31 31 H 1.08995 * 109.47187 * 294.65339 * 5 3 2 32 32 H 1.09006 * 109.47057 * 54.65270 * 5 3 2 33 33 H 1.08996 * 109.47457 * 64.74011 * 7 6 5 34 34 H 1.09004 * 109.47057 * 184.73472 * 7 6 5 35 35 H 1.08996 * 109.47102 * 304.73413 * 7 6 5 36 36 H 1.09001 * 110.10289 * 330.53336 * 8 6 5 37 37 H 1.09000 * 110.10098 * 92.14681 * 8 6 5 38 38 H 1.09006 * 111.36892 * 279.38545 * 9 8 6 39 39 H 1.08996 * 111.37133 * 154.59107 * 9 8 6 40 40 H 0.96992 * 126.08717 * 302.79828 * 13 6 5 41 41 H 1.08995 * 110.72228 * 159.06848 * 16 14 2 42 42 H 1.09000 * 110.72129 * 35.79040 * 16 14 2 43 43 H 1.08999 * 109.88245 * 218.38547 * 17 16 14 44 44 H 1.09007 * 109.87916 * 97.22525 * 17 16 14 45 45 H 0.97008 * 119.99902 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.36936 * 142.97198 * 27 18 17 47 47 H 1.09001 * 110.36479 * 265.29009 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3743 3.6320 0.1349 7 6 3.0933 3.5064 1.4796 8 6 1.5902 4.9481 0.1237 9 6 2.5244 6.0055 -0.5314 10 16 3.3292 4.9559 -1.8091 11 8 4.6902 5.3182 -1.9979 12 8 2.4570 4.7080 -2.9032 13 7 3.3660 3.5283 -0.9377 14 6 2.1975 -1.2688 -0.0006 15 1 3.2596 -1.1041 -0.1818 16 6 1.6014 -2.2546 -1.0398 17 6 0.4095 -2.8766 -0.2821 18 7 0.6707 -2.7095 1.1551 19 6 -0.1583 -3.1101 2.1687 20 1 0.1623 -3.0196 3.1961 21 6 -1.4106 -3.6324 1.8759 22 7 -1.7474 -3.8731 0.6265 23 14 -2.6177 -3.9936 3.2549 24 1 -3.5313 -2.8359 3.4290 25 1 -3.4101 -5.2027 2.9150 26 1 -1.8714 -4.2295 4.5169 27 6 1.9731 -2.0400 1.3240 28 1 -0.3633 -0.5728 0.8532 29 1 -0.3632 1.0254 0.0695 30 1 -0.3634 -0.4524 -0.9227 31 1 0.8322 2.5728 -0.9331 32 1 0.6892 2.4895 0.8391 33 1 3.6946 2.5974 1.4867 34 1 3.7403 4.3711 1.6278 35 1 2.3573 3.4616 2.2823 36 1 0.6797 4.8367 -0.4650 37 1 1.3439 5.2461 1.1429 38 1 3.2523 6.3896 0.1833 39 1 1.9519 6.8146 -0.9850 40 1 3.9420 2.7676 -1.1117 41 1 2.3298 -3.0200 -1.3074 42 1 1.2587 -1.7203 -1.9259 43 1 0.3290 -3.9365 -0.5235 44 1 -0.5120 -2.3614 -0.5538 45 1 -2.6224 -4.2385 0.4218 46 1 1.9374 -1.3473 2.1649 47 1 2.7622 -2.7772 1.4721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494863802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:20 Heat of formation + Delta-G solvation = -56.273951 kcal Electronic energy + Delta-G solvation = -30220.752321 eV Core-core repulsion = 26146.387654 eV Total energy + Delta-G solvation = -4074.364666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.43928 -38.58608 -37.25332 -36.96096 -36.00885 -34.36645 -32.32288 -31.99553 -30.73041 -29.32857 -28.32657 -27.64535 -25.83094 -24.79206 -24.20207 -21.40017 -20.26596 -20.11807 -19.69138 -18.57675 -17.69589 -17.05763 -16.80551 -16.74091 -15.97050 -15.77705 -15.56690 -14.95457 -14.80287 -14.64425 -14.04625 -13.82290 -13.62782 -13.41908 -13.31221 -13.15733 -12.72081 -12.43337 -12.27152 -12.15451 -12.14036 -11.97369 -11.89416 -11.83296 -11.73447 -11.68568 -11.38898 -11.07035 -10.98854 -10.94394 -10.79607 -10.74927 -10.29639 -10.17680 -9.97360 -9.74084 -9.52771 -9.37142 -8.71132 -8.21951 -6.86380 -5.80289 -3.12626 0.07205 2.45373 2.80865 3.22507 3.33384 3.40137 3.41704 3.42827 3.66316 3.94540 4.18000 4.35801 4.43086 4.65515 4.75470 4.86537 5.06245 5.12705 5.21356 5.31705 5.33918 5.39145 5.43418 5.46330 5.52055 5.55031 5.71491 5.73901 5.82576 5.94084 6.04832 6.15942 6.29889 6.31687 6.47274 6.49499 6.56805 6.66464 6.99009 7.25059 7.48755 7.53731 7.74264 7.78190 8.17115 8.41656 9.14127 9.74082 10.40699 11.31216 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.002785 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.204848 B =10052.413295 C =10415.414900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.585 5.585 3 C 0.518 3.482 4 O -0.553 6.553 5 C -0.148 4.148 6 C 0.158 3.842 7 C -0.165 4.165 8 C -0.118 4.118 9 C -0.593 4.593 10 S 2.563 3.437 11 O -0.965 6.965 12 O -0.956 6.956 13 N -1.074 6.074 14 C 0.124 3.876 15 H 0.099 0.901 16 C -0.156 4.156 17 C 0.172 3.828 18 N -0.603 5.603 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.127 3.873 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.444 0.556 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.054 0.946 45 H 0.252 0.748 46 H 0.042 0.958 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 19.028 -1.432 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.316 5.316 3 C 0.307 3.693 4 O -0.433 6.433 5 C -0.190 4.190 6 C 0.067 3.933 7 C -0.223 4.223 8 C -0.157 4.157 9 C -0.723 4.723 10 S 2.657 3.343 11 O -0.954 6.954 12 O -0.945 6.945 13 N -0.847 5.847 14 C 0.020 3.980 15 H 0.117 0.883 16 C -0.195 4.195 17 C 0.048 3.952 18 N -0.330 5.330 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.000 4.000 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.291 0.709 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.978 19.115 -2.378 20.169 hybrid contribution -0.981 -0.648 1.303 1.755 sum 4.997 18.468 -1.075 19.162 Atomic orbital electron populations 1.22123 0.78578 1.01650 1.04909 1.47703 1.07631 1.05322 1.70931 1.20337 0.87893 0.85092 0.76002 1.90487 1.13953 1.87056 1.51778 1.22240 0.98956 0.92596 1.05211 1.20259 0.88669 0.93996 0.90332 1.22427 1.01198 1.04383 0.94310 1.22526 0.98004 0.89706 1.05456 1.30764 1.12395 1.10920 1.18232 1.06553 0.75229 0.76891 0.75655 1.93604 1.33254 1.82826 1.85728 1.93656 1.68071 1.83080 1.49692 1.55176 1.50693 1.34498 1.44290 1.22243 0.95968 0.82434 0.97394 0.88331 1.23224 1.00513 0.97942 0.97796 1.21290 0.92849 0.98650 0.82422 1.44520 1.17544 1.68619 1.02276 1.19027 0.94440 1.35456 0.86775 0.90574 1.24785 0.97654 1.01295 0.96410 1.69977 1.20995 1.49468 1.16110 0.86157 0.81372 0.77455 0.81135 1.21631 1.21817 1.20725 1.21899 0.89616 0.93889 0.94641 0.88525 0.92054 0.91865 0.87957 0.87816 0.89295 0.92430 0.91939 0.88294 0.86829 0.84109 0.84297 0.70896 0.91336 0.91824 0.94288 0.92772 0.93738 0.93996 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.58 59.85 0.51 1.59 16 2 N -0.59 -9.17 2.91 -171.48 -0.50 -9.67 16 3 C 0.52 7.33 7.14 -10.99 -0.08 7.26 16 4 O -0.55 -8.73 11.24 5.56 0.06 -8.67 16 5 C -0.15 -1.50 3.06 -27.89 -0.09 -1.59 16 6 C 0.16 1.42 0.83 -131.74 -0.11 1.31 16 7 C -0.16 -1.50 8.08 37.16 0.30 -1.20 16 8 C -0.12 -0.66 5.56 -25.26 -0.14 -0.80 16 9 C -0.59 -3.20 7.66 38.52 0.29 -2.90 16 10 S 2.56 25.96 6.47 -107.50 -0.70 25.26 16 11 O -0.96 -13.17 18.14 -57.37 -1.04 -14.21 16 12 O -0.96 -12.78 18.14 -57.37 -1.04 -13.82 16 13 N -1.07 -11.64 5.66 0.60 0.00 -11.63 16 14 C 0.12 2.15 3.63 -65.78 -0.24 1.91 16 15 H 0.10 1.68 7.07 -51.93 -0.37 1.32 16 16 C -0.16 -2.78 6.09 -24.89 -0.15 -2.93 16 17 C 0.17 3.85 4.31 -3.06 -0.01 3.84 16 18 N -0.60 -14.13 2.16 -170.07 -0.37 -14.50 16 19 C -0.23 -5.95 10.23 -15.06 -0.15 -6.10 16 20 H 0.08 1.95 7.84 -52.48 -0.41 1.54 16 21 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 22 N -0.92 -25.22 10.36 55.49 0.57 -24.65 16 23 Si 0.91 20.97 29.56 -169.99 -5.02 15.94 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.13 2.52 6.71 -2.53 -0.02 2.50 16 28 H 0.10 1.85 6.62 -51.93 -0.34 1.50 16 29 H 0.06 0.71 5.76 -51.93 -0.30 0.41 16 30 H 0.06 1.01 6.43 -51.93 -0.33 0.68 16 31 H 0.10 0.96 8.01 -51.93 -0.42 0.55 16 32 H 0.10 0.85 7.43 -51.93 -0.39 0.47 16 33 H 0.09 1.07 5.97 -51.93 -0.31 0.76 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.46 7.80 -51.93 -0.40 0.06 16 37 H 0.11 0.42 7.77 -51.93 -0.40 0.01 16 38 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.44 5.53 6.75 -40.37 -0.27 5.25 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.07 7.90 -51.93 -0.41 0.66 16 43 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 44 H 0.05 1.29 5.52 -51.92 -0.29 1.00 16 45 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -34.06 367.10 -9.60 -43.67 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.13 Total: 4.09 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 0.03 Total: 2.65 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.29 Total: -60.44 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -2.02 Total: -36.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 25.96 SS G_CDS: -0.70 Total: 25.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.06 -9.60 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494863802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.605 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds