Wall clock time and date at job start Wed Apr 1 2020 03:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 119.99971 * 2 1 4 4 O 1.21280 * 119.99665 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00222 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47361 * 174.65336 * 5 3 2 7 7 C 1.53002 * 108.58010 * 297.44697 * 6 5 3 8 8 C 1.53198 * 108.64785 * 179.61544 * 6 5 3 9 9 C 1.55564 * 106.24004 * 211.34002 * 8 6 5 10 10 S 1.83899 * 99.63936 * 36.98735 * 9 8 6 11 11 O 1.42103 * 111.46671 * 215.90891 * 10 9 8 12 12 O 1.42100 * 111.46501 * 75.85768 * 10 9 8 13 13 N 1.46450 * 108.64519 * 55.43967 * 6 5 3 14 14 C 1.46501 * 119.99853 * 180.02562 * 2 1 3 15 15 H 1.08997 * 110.88433 * 169.74507 * 14 2 1 16 16 C 1.55160 * 111.00515 * 45.82289 * 14 2 1 17 17 C 1.54330 * 102.93965 * 277.42610 * 16 14 2 18 18 N 1.47022 * 107.27269 * 337.80969 * 17 16 14 19 19 C 1.36931 * 125.64644 * 178.97557 * 18 17 16 20 20 H 1.08007 * 120.00087 * 174.67502 * 19 18 17 21 21 C 1.38812 * 120.00411 * 354.67290 * 19 18 17 22 22 N 1.31619 * 119.99564 * 7.10481 * 21 19 18 23 23 Si 1.86798 * 120.00299 * 187.10284 * 21 19 18 24 24 H 1.48501 * 109.47118 * 94.93501 * 23 21 19 25 25 H 1.48507 * 109.47019 * 214.93516 * 23 21 19 26 26 H 1.48499 * 109.47109 * 334.93405 * 23 21 19 27 27 C 1.47419 * 108.70225 * 358.93976 * 18 17 16 28 28 H 1.08998 * 109.46756 * 236.12596 * 1 2 3 29 29 H 1.09003 * 109.46414 * 356.12133 * 1 2 3 30 30 H 1.08998 * 109.47317 * 116.12118 * 1 2 3 31 31 H 1.08995 * 109.47187 * 294.65339 * 5 3 2 32 32 H 1.09006 * 109.47057 * 54.65270 * 5 3 2 33 33 H 1.08996 * 109.47457 * 64.74011 * 7 6 5 34 34 H 1.09004 * 109.47057 * 184.73472 * 7 6 5 35 35 H 1.08996 * 109.47102 * 304.73413 * 7 6 5 36 36 H 1.09001 * 110.10289 * 330.53336 * 8 6 5 37 37 H 1.09000 * 110.10098 * 92.14681 * 8 6 5 38 38 H 1.09006 * 111.36892 * 279.38545 * 9 8 6 39 39 H 1.08996 * 111.37133 * 154.59107 * 9 8 6 40 40 H 0.96992 * 126.08717 * 302.79828 * 13 6 5 41 41 H 1.08995 * 110.72228 * 159.06848 * 16 14 2 42 42 H 1.09000 * 110.72129 * 35.79040 * 16 14 2 43 43 H 1.08999 * 109.88245 * 218.38547 * 17 16 14 44 44 H 1.09007 * 109.87916 * 97.22525 * 17 16 14 45 45 H 0.97008 * 119.99902 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.36936 * 142.97198 * 27 18 17 47 47 H 1.09001 * 110.36479 * 265.29009 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3743 3.6320 0.1349 7 6 3.0933 3.5064 1.4796 8 6 1.5902 4.9481 0.1237 9 6 2.5244 6.0055 -0.5314 10 16 3.3292 4.9559 -1.8091 11 8 4.6902 5.3182 -1.9979 12 8 2.4570 4.7080 -2.9032 13 7 3.3660 3.5283 -0.9377 14 6 2.1975 -1.2688 -0.0006 15 1 3.2596 -1.1041 -0.1818 16 6 1.6014 -2.2546 -1.0398 17 6 0.4095 -2.8766 -0.2821 18 7 0.6707 -2.7095 1.1551 19 6 -0.1583 -3.1101 2.1687 20 1 0.1623 -3.0196 3.1961 21 6 -1.4106 -3.6324 1.8759 22 7 -1.7474 -3.8731 0.6265 23 14 -2.6177 -3.9936 3.2549 24 1 -3.5313 -2.8359 3.4290 25 1 -3.4101 -5.2027 2.9150 26 1 -1.8714 -4.2295 4.5169 27 6 1.9731 -2.0400 1.3240 28 1 -0.3633 -0.5728 0.8532 29 1 -0.3632 1.0254 0.0695 30 1 -0.3634 -0.4524 -0.9227 31 1 0.8322 2.5728 -0.9331 32 1 0.6892 2.4895 0.8391 33 1 3.6946 2.5974 1.4867 34 1 3.7403 4.3711 1.6278 35 1 2.3573 3.4616 2.2823 36 1 0.6797 4.8367 -0.4650 37 1 1.3439 5.2461 1.1429 38 1 3.2523 6.3896 0.1833 39 1 1.9519 6.8146 -0.9850 40 1 3.9420 2.7676 -1.1117 41 1 2.3298 -3.0200 -1.3074 42 1 1.2587 -1.7203 -1.9259 43 1 0.3290 -3.9365 -0.5235 44 1 -0.5120 -2.3614 -0.5538 45 1 -2.6224 -4.2385 0.4218 46 1 1.9374 -1.3473 2.1649 47 1 2.7622 -2.7772 1.4721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494863802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:19 Heat of formation + Delta-G solvation = -82.137045 kcal Electronic energy + Delta-G solvation = -30221.873829 eV Core-core repulsion = 26146.387654 eV Total energy + Delta-G solvation = -4075.486174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.50839 -39.73362 -38.31271 -37.95213 -36.87205 -35.82124 -34.05607 -32.59365 -31.71984 -30.92873 -29.71623 -28.61260 -27.25926 -26.20481 -25.16095 -22.47673 -21.93563 -21.17657 -20.44938 -19.82185 -18.89142 -18.52205 -17.98692 -17.42150 -17.03345 -16.73954 -16.63415 -16.59194 -15.89042 -15.64445 -15.58062 -15.06828 -14.70417 -14.40153 -14.09910 -14.00726 -13.84591 -13.57407 -13.40087 -13.34597 -13.22957 -13.18594 -13.08308 -13.03404 -12.83978 -12.78148 -12.71429 -12.44204 -12.27407 -12.04824 -12.00869 -11.95685 -11.82822 -11.68996 -11.52133 -11.38321 -10.66368 -10.52262 -10.27905 -9.60408 -8.76714 -7.81906 -5.15316 -0.61957 1.49541 1.50518 1.58990 1.68731 1.76371 2.09516 2.52299 2.74235 3.09242 3.35626 3.37553 3.54684 3.67175 3.71183 3.80271 3.97679 4.02822 4.09690 4.29876 4.32015 4.36096 4.54552 4.61313 4.64797 4.72217 4.73993 4.75280 4.77649 4.90154 4.91525 4.95537 5.00927 5.05266 5.09148 5.25257 5.32327 5.49765 5.58011 5.64137 5.69119 5.82862 6.22388 6.32151 6.60453 7.14252 7.28268 7.79985 8.45715 9.28185 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.002785 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.204848 B =10052.413295 C =10415.414900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.513 3.487 4 O -0.570 6.570 5 C -0.148 4.148 6 C 0.152 3.848 7 C -0.164 4.164 8 C -0.117 4.117 9 C -0.549 4.549 10 S 2.547 3.453 11 O -1.013 7.013 12 O -0.999 6.999 13 N -1.085 6.085 14 C 0.135 3.865 15 H 0.105 0.895 16 C -0.142 4.142 17 C 0.185 3.815 18 N -0.615 5.615 19 C -0.238 4.238 20 H 0.076 0.924 21 C -0.054 4.054 22 N -0.943 5.943 23 Si 0.970 3.030 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.275 1.275 27 C 0.127 3.873 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.434 0.566 41 H 0.079 0.921 42 H 0.077 0.923 43 H -0.002 1.002 44 H 0.036 0.964 45 H 0.246 0.754 46 H 0.039 0.961 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 22.102 0.044 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.324 5.324 3 C 0.304 3.696 4 O -0.451 6.451 5 C -0.189 4.189 6 C 0.061 3.939 7 C -0.223 4.223 8 C -0.156 4.156 9 C -0.684 4.684 10 S 2.647 3.353 11 O -1.002 7.002 12 O -0.988 6.988 13 N -0.854 5.854 14 C 0.030 3.970 15 H 0.123 0.877 16 C -0.181 4.181 17 C 0.060 3.940 18 N -0.341 5.341 19 C -0.367 4.367 20 H 0.093 0.907 21 C -0.248 4.248 22 N -0.592 5.592 23 Si 0.800 3.200 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.200 1.200 27 C 0.001 3.999 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.191 0.809 40 H 0.277 0.723 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.016 0.984 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.116 22.200 -0.927 22.800 hybrid contribution -0.639 -1.585 0.925 1.943 sum 4.477 20.615 -0.002 21.095 Atomic orbital electron populations 1.21969 0.78347 1.03480 1.02474 1.47770 1.07683 1.05193 1.71770 1.21142 0.87955 0.85816 0.74737 1.90499 1.15094 1.87405 1.52072 1.22384 0.99328 0.90317 1.06886 1.20566 0.88239 0.95542 0.89538 1.22411 1.01528 1.03276 0.95063 1.22711 0.97730 0.87277 1.07896 1.30586 1.12217 1.10309 1.15326 1.06809 0.74420 0.77494 0.76571 1.93539 1.36229 1.83502 1.86975 1.93596 1.68240 1.84102 1.52898 1.55211 1.50980 1.34376 1.44846 1.21995 0.96512 0.83193 0.95260 0.87716 1.23079 0.98865 0.98268 0.97843 1.21023 0.94158 0.96196 0.82600 1.44679 1.18442 1.68721 1.02300 1.19297 0.95029 1.34896 0.87435 0.90657 1.25480 0.99139 1.01759 0.98397 1.70169 1.20874 1.50430 1.17726 0.85185 0.79177 0.76841 0.78841 1.20935 1.22692 1.19969 1.21975 0.87969 0.93857 0.96133 0.92423 0.87859 0.93045 0.86826 0.85123 0.92874 0.90956 0.90129 0.86601 0.83359 0.81768 0.80879 0.72280 0.90287 0.90423 0.98356 0.94583 0.94416 0.94265 0.95514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 8.58 127.77 1.10 3.48 16 2 N -0.59 -18.00 2.91 -814.82 -2.37 -20.37 16 3 C 0.51 13.75 7.14 87.66 0.63 14.38 16 4 O -0.57 -17.72 11.24 -3.03 -0.03 -17.76 16 5 C -0.15 -2.51 3.06 29.85 0.09 -2.42 16 6 C 0.15 2.22 0.83 3.68 0.00 2.22 16 7 C -0.16 -2.50 8.08 71.98 0.58 -1.92 16 8 C -0.12 -0.67 5.56 31.54 0.18 -0.49 16 9 C -0.55 -3.18 7.66 72.87 0.56 -2.62 16 10 S 2.55 48.57 6.47 -56.49 -0.37 48.21 16 11 O -1.01 -27.91 18.14 -127.81 -2.32 -30.23 16 12 O -1.00 -26.25 18.14 -127.81 -2.32 -28.57 16 13 N -1.09 -22.30 5.66 -152.03 -0.86 -23.16 16 14 C 0.14 4.66 3.63 46.38 0.17 4.83 16 15 H 0.10 3.52 7.07 -2.39 -0.02 3.51 16 16 C -0.14 -5.07 6.09 31.79 0.19 -4.88 16 17 C 0.18 8.53 4.31 86.73 0.37 8.91 16 18 N -0.61 -29.47 2.16 -691.97 -1.49 -30.96 16 19 C -0.24 -12.55 10.23 84.03 0.86 -11.69 16 20 H 0.08 3.89 7.84 -2.91 -0.02 3.87 16 21 C -0.05 -2.89 5.48 84.86 0.46 -2.42 16 22 N -0.94 -53.29 10.36 21.65 0.22 -53.07 16 23 Si 0.97 43.47 29.56 68.60 2.03 45.49 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 27 C 0.13 5.09 6.71 86.86 0.58 5.67 16 28 H 0.06 2.20 6.62 -2.39 -0.02 2.19 16 29 H 0.10 2.12 5.76 -2.39 -0.01 2.11 16 30 H 0.05 1.64 6.43 -2.39 -0.02 1.62 16 31 H 0.11 1.74 8.01 -2.39 -0.02 1.72 16 32 H 0.13 1.54 7.43 -2.38 -0.02 1.52 16 33 H 0.05 1.22 5.97 -2.39 -0.01 1.21 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 0.39 7.80 -2.39 -0.02 0.37 16 37 H 0.15 0.00 7.77 -2.39 -0.02 -0.02 16 38 H 0.16 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.17 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.43 10.94 6.75 -93.00 -0.63 10.31 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 42 H 0.08 2.57 7.90 -2.39 -0.02 2.55 16 43 H 0.00 -0.10 7.61 -2.39 -0.02 -0.12 16 44 H 0.04 1.79 5.52 -2.38 -0.01 1.77 16 45 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 46 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -78.94 367.10 -1.37 -80.31 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.36 Total: 17.08 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 5.77 Total: 13.02 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -4.50 Total: -127.56 kcal Atomic # 8 Polarization: -71.89 SS G_CDS: -4.67 Total: -76.56 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 48.57 SS G_CDS: -0.37 Total: 48.21 kcal Total: -78.94 -1.37 -80.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494863802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.825 kcal (2) G-P(sol) polarization free energy of solvation -78.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds