Wall clock time and date at job start Wed Apr 1 2020 03:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 108.57886 * 2 1 4 4 C 1.50702 * 109.47211 * 61.54851 * 3 2 1 5 5 O 1.21280 * 119.99724 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00086 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99966 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.47062 * 179.97438 * 7 6 4 9 9 H 1.09001 * 110.64062 * 51.85832 * 8 7 6 10 10 C 1.55158 * 110.71847 * 175.00033 * 8 7 6 11 11 C 1.54908 * 101.57700 * 154.04380 * 10 8 7 12 12 N 1.47422 * 104.83756 * 322.98951 * 11 10 8 13 13 C 1.36937 * 125.65347 * 204.09632 * 12 11 10 14 14 H 1.08000 * 120.00146 * 163.17660 * 13 12 11 15 15 C 1.38816 * 119.99358 * 343.17639 * 13 12 11 16 16 N 1.31618 * 120.00134 * 331.90358 * 15 13 12 17 17 Si 1.86805 * 119.99637 * 151.90527 * 15 13 12 18 18 H 1.48495 * 109.47117 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47144 * 299.99945 * 17 15 13 20 20 H 1.48503 * 109.46727 * 59.99659 * 17 15 13 21 21 C 1.47027 * 108.69925 * 24.35512 * 12 11 10 22 22 C 1.53201 * 108.50512 * 242.08322 * 2 1 3 23 23 C 1.55561 * 106.23815 * 211.43818 * 22 2 1 24 24 S 1.83900 * 99.64239 * 36.98814 * 23 22 2 25 25 O 1.42095 * 111.46425 * 215.90805 * 24 23 22 26 26 O 1.42105 * 111.46193 * 75.85757 * 24 23 22 27 27 N 1.46448 * 108.64773 * 118.00135 * 2 1 3 28 28 H 1.08998 * 109.47073 * 60.69943 * 1 2 3 29 29 H 1.08996 * 109.47016 * 180.70088 * 1 2 3 30 30 H 1.09001 * 109.46954 * 300.70071 * 1 2 3 31 31 H 1.09003 * 109.47294 * 301.54295 * 3 2 1 32 32 H 1.09006 * 109.46966 * 181.54967 * 3 2 1 33 33 H 0.97007 * 119.99689 * 359.97438 * 6 4 3 34 34 H 1.08995 * 109.46738 * 60.00086 * 7 6 4 35 35 H 1.08992 * 109.47122 * 299.99812 * 7 6 4 36 36 H 1.09003 * 111.00260 * 35.96798 * 10 8 7 37 37 H 1.09003 * 111.00256 * 272.11483 * 10 8 7 38 38 H 1.09003 * 110.36602 * 204.15235 * 11 10 8 39 39 H 1.08994 * 110.46206 * 81.87799 * 11 10 8 40 40 H 0.96993 * 120.00363 * 353.96143 * 16 15 13 41 41 H 1.09002 * 109.87546 * 118.13263 * 21 12 11 42 42 H 1.09001 * 109.88370 * 239.29282 * 21 12 11 43 43 H 1.08998 * 110.10411 * 330.62922 * 22 2 1 44 44 H 1.09000 * 110.10405 * 92.24521 * 22 2 1 45 45 H 1.09002 * 111.36859 * 279.38257 * 23 22 2 46 46 H 1.09007 * 111.36560 * 154.59285 * 23 22 2 47 47 H 0.96997 * 126.07927 * 302.68030 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5359 2.1421 1.2492 5 8 0.8682 1.5351 2.0595 6 7 1.8473 3.4353 1.4660 7 6 1.3787 4.1080 2.6801 8 6 1.8674 5.5579 2.6808 9 1 1.6069 6.0516 1.7445 10 6 1.2836 6.3334 3.8913 11 6 2.3516 7.4362 4.0983 12 7 3.6375 6.7753 3.8100 13 6 4.8607 7.1680 4.2840 14 1 5.6974 6.4860 4.2499 15 6 5.0251 8.4427 4.8084 16 7 4.2646 9.4309 4.3870 17 14 6.3258 8.7557 6.1122 18 1 6.2996 10.1878 6.5038 19 1 6.0475 7.9115 7.3017 20 1 7.6648 8.4164 5.5669 21 6 3.3898 5.6284 2.9241 22 6 2.0163 -0.6802 -1.2837 23 6 3.3628 -1.3723 -0.9261 24 16 2.9762 -1.9343 0.7817 25 8 4.1153 -1.8505 1.6270 26 8 2.1256 -3.0726 0.7745 27 7 1.9983 -0.6515 1.2252 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 1.6237 1.9660 -0.8758 32 1 3.1071 1.4673 -0.0278 33 1 2.3818 3.9207 0.8180 34 1 1.7719 3.5921 3.5560 35 1 0.2893 4.0914 2.7072 36 1 1.2105 5.6905 4.7685 37 1 0.3149 6.7688 3.6460 38 1 2.3319 7.7949 5.1275 39 1 2.1859 8.2618 3.4064 40 1 3.6504 9.2897 3.6497 41 1 3.9121 5.7712 1.9781 42 1 3.7298 4.7100 3.4027 43 1 1.2893 -1.4227 -1.6128 44 1 2.1732 0.0632 -2.0653 45 1 4.1889 -0.6613 -0.9329 46 1 3.5630 -2.2163 -1.5863 47 1 1.7799 -0.3865 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567417853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:27 Heat of formation + Delta-G solvation = -80.309075 kcal Electronic energy + Delta-G solvation = -28905.604690 eV Core-core repulsion = 24830.197782 eV Total energy + Delta-G solvation = -4075.406908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.56077 -38.52558 -37.66391 -37.23796 -36.12776 -34.86988 -32.79765 -32.15756 -31.08573 -29.85640 -28.90716 -27.89240 -25.31939 -24.56334 -23.56398 -21.26765 -20.71694 -20.09863 -19.82496 -19.78052 -17.84934 -17.60868 -17.31217 -16.63032 -16.19223 -16.01972 -15.70722 -15.42233 -14.84077 -14.67728 -14.44403 -14.09475 -13.81644 -13.74764 -13.67929 -13.33540 -13.14767 -12.94559 -12.56798 -12.39240 -12.28239 -12.24834 -12.20517 -11.92745 -11.79973 -11.65463 -11.56110 -11.31965 -10.90699 -10.77399 -10.60994 -10.55190 -10.39929 -10.18264 -10.00981 -9.80518 -9.71407 -9.54500 -9.09901 -8.42791 -6.96947 -6.12701 -3.17184 -0.05530 2.30433 2.48187 3.02641 3.28327 3.48938 3.51148 3.53634 3.71024 3.77928 4.04764 4.15831 4.46090 4.54234 4.58774 4.75246 4.88337 4.94041 5.01294 5.02450 5.04299 5.09250 5.17375 5.22381 5.30510 5.33104 5.54869 5.59978 5.65971 5.75866 5.86539 5.90251 6.08420 6.11043 6.21899 6.33030 6.38042 6.53690 6.73393 6.94110 7.00536 7.03467 7.38707 7.77605 8.10224 8.46471 8.99677 9.78948 10.34322 11.20023 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.002243 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.815020 B =12478.399677 C =13360.857239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.159 3.841 3 C -0.153 4.153 4 C 0.517 3.483 5 O -0.539 6.539 6 N -0.724 5.724 7 C 0.133 3.867 8 C -0.115 4.115 9 H 0.077 0.923 10 C -0.126 4.126 11 C 0.144 3.856 12 N -0.603 5.603 13 C -0.338 4.338 14 H 0.064 0.936 15 C -0.025 4.025 16 N -0.917 5.917 17 Si 1.063 2.937 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.293 1.293 21 C 0.141 3.859 22 C -0.117 4.117 23 C -0.597 4.597 24 S 2.564 3.436 25 O -0.960 6.960 26 O -0.955 6.955 27 N -1.078 6.078 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.026 0.974 40 H 0.268 0.732 41 H 0.019 0.981 42 H 0.026 0.974 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 -19.271 -16.151 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 C -0.194 4.194 4 C 0.303 3.697 5 O -0.417 6.417 6 N -0.375 5.375 7 C 0.009 3.991 8 C -0.134 4.134 9 H 0.095 0.905 10 C -0.165 4.165 11 C 0.018 3.982 12 N -0.330 5.330 13 C -0.466 4.466 14 H 0.082 0.918 15 C -0.227 4.227 16 N -0.558 5.558 17 Si 0.893 3.107 18 H -0.211 1.211 19 H -0.221 1.221 20 H -0.220 1.220 21 C 0.016 3.984 22 C -0.156 4.156 23 C -0.727 4.727 24 S 2.658 3.342 25 O -0.949 6.949 26 O -0.944 6.944 27 N -0.848 5.848 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.160 0.840 46 H 0.159 0.841 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -7.239 -19.376 -13.976 24.963 hybrid contribution -0.353 -0.186 -1.655 1.703 sum -7.592 -19.562 -15.631 26.165 Atomic orbital electron populations 1.22473 0.92627 1.03419 1.04139 1.20242 0.97048 0.91643 0.84232 1.22280 1.03459 0.96049 0.97660 1.20416 0.79720 0.81687 0.87866 1.90572 1.39166 1.64752 1.47189 1.46113 1.55090 1.11811 1.24460 1.21429 0.98913 0.91888 0.86865 1.22436 0.97641 0.93607 0.99701 0.90482 1.22796 0.98438 0.98502 0.96800 1.21529 0.84450 0.92805 0.99400 1.44554 1.02797 1.31337 1.54344 1.19730 0.87575 0.98907 1.40365 0.91817 1.25752 1.03335 0.90519 1.03044 1.70790 1.26234 1.31228 1.27503 0.83547 0.74877 0.75861 0.76421 1.21057 1.22061 1.21995 1.21359 0.91365 0.92220 0.93491 1.22535 0.93901 1.01891 0.97286 1.30815 1.05676 1.12091 1.24108 1.06549 0.75072 0.74599 0.77976 1.93632 1.51529 1.86446 1.63313 1.93652 1.65755 1.48910 1.86125 1.55142 1.67088 1.49510 1.13077 0.92129 0.91755 0.88849 0.87685 0.88217 0.76406 0.91115 0.91519 0.91381 0.91626 0.93025 0.95631 0.92048 0.96274 0.95602 0.88008 0.86879 0.83967 0.84140 0.71183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 8.17 37.16 0.30 -0.93 16 2 C 0.16 1.07 0.83 -131.74 -0.11 0.96 16 3 C -0.15 -0.95 4.67 -27.88 -0.13 -1.08 16 4 C 0.52 5.31 7.31 -10.99 -0.08 5.23 16 5 O -0.54 -7.06 11.80 5.56 0.07 -6.99 16 6 N -0.72 -7.59 5.47 -60.30 -0.33 -7.92 16 7 C 0.13 1.72 5.03 -4.04 -0.02 1.70 16 8 C -0.11 -1.74 2.94 -88.78 -0.26 -2.00 16 9 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 10 C -0.13 -2.13 6.53 -24.58 -0.16 -2.29 16 11 C 0.14 3.25 5.30 -2.53 -0.01 3.24 16 12 N -0.60 -15.08 3.29 -170.07 -0.56 -15.64 16 13 C -0.34 -9.56 10.02 -15.06 -0.15 -9.71 16 14 H 0.06 1.80 7.97 -52.49 -0.42 1.39 16 15 C -0.02 -0.71 5.08 -17.43 -0.09 -0.80 16 16 N -0.92 -27.55 12.93 55.49 0.72 -26.83 16 17 Si 1.06 25.39 30.00 -169.99 -5.10 20.29 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.14 2.78 6.77 -3.06 -0.02 2.76 16 22 C -0.12 -0.43 5.56 -25.27 -0.14 -0.57 16 23 C -0.60 -2.43 7.66 38.52 0.29 -2.13 16 24 S 2.56 23.10 6.47 -107.50 -0.70 22.41 16 25 O -0.96 -12.62 18.14 -57.37 -1.04 -13.66 16 26 O -0.96 -11.62 18.14 -57.37 -1.04 -12.66 16 27 N -1.08 -9.90 5.64 0.60 0.00 -9.89 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.94 5.55 -51.93 -0.29 0.65 16 31 H 0.10 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 34 H 0.07 1.05 7.95 -51.93 -0.41 0.63 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 1.29 7.95 -51.93 -0.41 0.88 16 39 H 0.03 0.62 6.80 -51.93 -0.35 0.26 16 40 H 0.27 8.03 6.06 -40.82 -0.25 7.78 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.53 7.70 -51.93 -0.40 0.13 16 43 H 0.10 0.31 7.82 -51.93 -0.41 -0.10 16 44 H 0.11 0.15 7.74 -51.93 -0.40 -0.25 16 45 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.14 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.44 4.78 7.07 -40.36 -0.29 4.49 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -38.64 379.59 -10.25 -48.88 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.41 Total: 1.92 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.58 Total: -5.63 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.17 Total: -60.29 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -2.02 Total: -33.31 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Atomic # 16 Polarization: 23.10 SS G_CDS: -0.70 Total: 22.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.64 -10.25 -48.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567417853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.425 kcal (2) G-P(sol) polarization free energy of solvation -38.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds