Wall clock time and date at job start Wed Apr 1 2020 03:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 108.57886 * 2 1 4 4 C 1.50702 * 109.47211 * 61.54851 * 3 2 1 5 5 O 1.21280 * 119.99724 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00086 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99966 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.47062 * 179.97438 * 7 6 4 9 9 H 1.09001 * 110.64062 * 51.85832 * 8 7 6 10 10 C 1.55158 * 110.71847 * 175.00033 * 8 7 6 11 11 C 1.54908 * 101.57700 * 154.04380 * 10 8 7 12 12 N 1.47422 * 104.83756 * 322.98951 * 11 10 8 13 13 C 1.36937 * 125.65347 * 204.09632 * 12 11 10 14 14 H 1.08000 * 120.00146 * 163.17660 * 13 12 11 15 15 C 1.38816 * 119.99358 * 343.17639 * 13 12 11 16 16 N 1.31618 * 120.00134 * 331.90358 * 15 13 12 17 17 Si 1.86805 * 119.99637 * 151.90527 * 15 13 12 18 18 H 1.48495 * 109.47117 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47144 * 299.99945 * 17 15 13 20 20 H 1.48503 * 109.46727 * 59.99659 * 17 15 13 21 21 C 1.47027 * 108.69925 * 24.35512 * 12 11 10 22 22 C 1.53201 * 108.50512 * 242.08322 * 2 1 3 23 23 C 1.55561 * 106.23815 * 211.43818 * 22 2 1 24 24 S 1.83900 * 99.64239 * 36.98814 * 23 22 2 25 25 O 1.42095 * 111.46425 * 215.90805 * 24 23 22 26 26 O 1.42105 * 111.46193 * 75.85757 * 24 23 22 27 27 N 1.46448 * 108.64773 * 118.00135 * 2 1 3 28 28 H 1.08998 * 109.47073 * 60.69943 * 1 2 3 29 29 H 1.08996 * 109.47016 * 180.70088 * 1 2 3 30 30 H 1.09001 * 109.46954 * 300.70071 * 1 2 3 31 31 H 1.09003 * 109.47294 * 301.54295 * 3 2 1 32 32 H 1.09006 * 109.46966 * 181.54967 * 3 2 1 33 33 H 0.97007 * 119.99689 * 359.97438 * 6 4 3 34 34 H 1.08995 * 109.46738 * 60.00086 * 7 6 4 35 35 H 1.08992 * 109.47122 * 299.99812 * 7 6 4 36 36 H 1.09003 * 111.00260 * 35.96798 * 10 8 7 37 37 H 1.09003 * 111.00256 * 272.11483 * 10 8 7 38 38 H 1.09003 * 110.36602 * 204.15235 * 11 10 8 39 39 H 1.08994 * 110.46206 * 81.87799 * 11 10 8 40 40 H 0.96993 * 120.00363 * 353.96143 * 16 15 13 41 41 H 1.09002 * 109.87546 * 118.13263 * 21 12 11 42 42 H 1.09001 * 109.88370 * 239.29282 * 21 12 11 43 43 H 1.08998 * 110.10411 * 330.62922 * 22 2 1 44 44 H 1.09000 * 110.10405 * 92.24521 * 22 2 1 45 45 H 1.09002 * 111.36859 * 279.38257 * 23 22 2 46 46 H 1.09007 * 111.36560 * 154.59285 * 23 22 2 47 47 H 0.96997 * 126.07927 * 302.68030 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5359 2.1421 1.2492 5 8 0.8682 1.5351 2.0595 6 7 1.8473 3.4353 1.4660 7 6 1.3787 4.1080 2.6801 8 6 1.8674 5.5579 2.6808 9 1 1.6069 6.0516 1.7445 10 6 1.2836 6.3334 3.8913 11 6 2.3516 7.4362 4.0983 12 7 3.6375 6.7753 3.8100 13 6 4.8607 7.1680 4.2840 14 1 5.6974 6.4860 4.2499 15 6 5.0251 8.4427 4.8084 16 7 4.2646 9.4309 4.3870 17 14 6.3258 8.7557 6.1122 18 1 6.2996 10.1878 6.5038 19 1 6.0475 7.9115 7.3017 20 1 7.6648 8.4164 5.5669 21 6 3.3898 5.6284 2.9241 22 6 2.0163 -0.6802 -1.2837 23 6 3.3628 -1.3723 -0.9261 24 16 2.9762 -1.9343 0.7817 25 8 4.1153 -1.8505 1.6270 26 8 2.1256 -3.0726 0.7745 27 7 1.9983 -0.6515 1.2252 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 1.6237 1.9660 -0.8758 32 1 3.1071 1.4673 -0.0278 33 1 2.3818 3.9207 0.8180 34 1 1.7719 3.5921 3.5560 35 1 0.2893 4.0914 2.7072 36 1 1.2105 5.6905 4.7685 37 1 0.3149 6.7688 3.6460 38 1 2.3319 7.7949 5.1275 39 1 2.1859 8.2618 3.4064 40 1 3.6504 9.2897 3.6497 41 1 3.9121 5.7712 1.9781 42 1 3.7298 4.7100 3.4027 43 1 1.2893 -1.4227 -1.6128 44 1 2.1732 0.0632 -2.0653 45 1 4.1889 -0.6613 -0.9329 46 1 3.5630 -2.2163 -1.5863 47 1 1.7799 -0.3865 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567417853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:26 Heat of formation + Delta-G solvation = -112.713026 kcal Electronic energy + Delta-G solvation = -28907.009830 eV Core-core repulsion = 24830.197782 eV Total energy + Delta-G solvation = -4076.812048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.27603 -39.72190 -38.64897 -38.02698 -36.91520 -36.10694 -34.46873 -32.61533 -31.96015 -31.26290 -30.22699 -28.80583 -26.93751 -25.36253 -24.75598 -22.34201 -21.69452 -21.46745 -20.86691 -20.47776 -19.58050 -18.50339 -18.11658 -17.40831 -17.14711 -16.75989 -16.49411 -16.29560 -16.26502 -15.73486 -15.59618 -15.22936 -15.11058 -14.85129 -14.51190 -14.33877 -14.05502 -13.88628 -13.59069 -13.33717 -13.24356 -13.21820 -13.07235 -12.94665 -12.62713 -12.57899 -12.52954 -12.52617 -12.19550 -12.01164 -11.94836 -11.87692 -11.82338 -11.63629 -11.57547 -11.39091 -10.61725 -10.52804 -10.33656 -10.00321 -9.03167 -8.35169 -5.36125 -0.65583 1.55455 1.63211 1.68994 1.75648 1.82368 2.25801 2.61786 2.71124 3.08033 3.15794 3.37267 3.46905 3.57828 3.66077 3.71281 3.85136 3.90105 3.96078 4.08391 4.32669 4.36137 4.43758 4.51734 4.57158 4.66091 4.72751 4.74859 4.76265 4.79925 4.88124 4.90797 4.96789 4.99782 5.08183 5.10659 5.22532 5.31132 5.34173 5.45137 5.64866 5.65662 6.26259 6.30616 6.63048 6.89990 7.35647 7.68417 8.27409 8.97058 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.002243 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.815020 B =12478.399677 C =13360.857239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 C -0.148 4.148 4 C 0.508 3.492 5 O -0.572 6.572 6 N -0.722 5.722 7 C 0.145 3.855 8 C -0.092 4.092 9 H 0.099 0.901 10 C -0.114 4.114 11 C 0.144 3.856 12 N -0.629 5.629 13 C -0.350 4.350 14 H 0.056 0.944 15 C -0.076 4.076 16 N -0.943 5.943 17 Si 1.113 2.887 18 H -0.289 1.289 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.138 3.862 22 C -0.115 4.115 23 C -0.551 4.551 24 S 2.543 3.457 25 O -1.015 7.015 26 O -1.002 7.002 27 N -1.088 6.088 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.413 0.587 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.257 0.743 41 H 0.023 0.977 42 H 0.019 0.981 43 H 0.112 0.888 44 H 0.157 0.843 45 H 0.168 0.832 46 H 0.172 0.828 47 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 -19.721 -19.576 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.059 3.941 3 C -0.189 4.189 4 C 0.297 3.703 5 O -0.452 6.452 6 N -0.374 5.374 7 C 0.021 3.979 8 C -0.111 4.111 9 H 0.117 0.883 10 C -0.152 4.152 11 C 0.018 3.982 12 N -0.356 5.356 13 C -0.478 4.478 14 H 0.074 0.926 15 C -0.273 4.273 16 N -0.586 5.586 17 Si 0.937 3.063 18 H -0.215 1.215 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.014 3.986 22 C -0.154 4.154 23 C -0.687 4.687 24 S 2.643 3.357 25 O -1.005 7.005 26 O -0.991 6.991 27 N -0.856 5.856 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.137 0.863 33 H 0.249 0.751 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.130 0.870 44 H 0.174 0.826 45 H 0.186 0.814 46 H 0.190 0.810 47 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -7.286 -19.882 -17.399 27.406 hybrid contribution -0.380 -0.060 -0.657 0.761 sum -7.665 -19.941 -18.057 27.972 Atomic orbital electron populations 1.22433 0.93439 1.02690 1.03964 1.20604 0.96631 0.92381 0.84526 1.22412 1.04672 0.95240 0.96623 1.21254 0.78939 0.81245 0.88891 1.90584 1.40617 1.65345 1.48678 1.46044 1.55362 1.12199 1.23762 1.21091 0.99251 0.90131 0.87433 1.22275 0.93898 0.95144 0.99765 0.88292 1.22711 0.98017 0.96701 0.97800 1.21481 0.85628 0.94278 0.96764 1.44857 1.02618 1.32483 1.55668 1.19982 0.88854 0.98721 1.40264 0.92606 1.27092 1.05023 0.90588 1.04569 1.70894 1.27539 1.32000 1.28182 0.82887 0.73575 0.75500 0.74342 1.21493 1.21067 1.19898 1.21509 0.94828 0.89844 0.92468 1.22736 0.93310 1.03077 0.96239 1.30621 1.07031 1.13502 1.17518 1.06931 0.73990 0.74217 0.80548 1.93555 1.52905 1.86965 1.67087 1.93586 1.66598 1.51194 1.87761 1.55162 1.67386 1.49485 1.13542 0.89365 0.92723 0.91927 0.83645 0.86276 0.75077 0.93437 0.90502 0.91332 0.88310 0.96663 0.97194 0.93276 0.95853 0.96309 0.86996 0.82560 0.81443 0.80995 0.72623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 8.17 71.98 0.59 -1.54 16 2 C 0.15 1.55 0.83 3.68 0.00 1.56 16 3 C -0.15 -1.23 4.67 29.85 0.14 -1.09 16 4 C 0.51 9.37 7.31 87.66 0.64 10.01 16 5 O -0.57 -14.81 11.80 -3.03 -0.04 -14.84 16 6 N -0.72 -13.32 5.47 -463.07 -2.53 -15.86 16 7 C 0.15 3.51 5.03 86.38 0.43 3.95 16 8 C -0.09 -2.60 2.94 -9.60 -0.03 -2.63 16 9 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 10 C -0.11 -3.69 6.53 31.99 0.21 -3.48 16 11 C 0.14 6.64 5.30 86.86 0.46 7.10 16 12 N -0.63 -31.93 3.29 -691.96 -2.28 -34.21 16 13 C -0.35 -20.13 10.02 84.03 0.84 -19.29 16 14 H 0.06 3.22 7.97 -2.91 -0.02 3.19 16 15 C -0.08 -4.44 5.08 84.86 0.43 -4.01 16 16 N -0.94 -58.13 12.93 21.65 0.28 -57.85 16 17 Si 1.11 51.84 30.00 68.60 2.06 53.90 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 C 0.14 5.36 6.77 86.73 0.59 5.95 16 22 C -0.11 -0.24 5.56 31.54 0.18 -0.06 16 23 C -0.55 -1.96 7.66 72.86 0.56 -1.40 16 24 S 2.54 45.35 6.47 -56.49 -0.37 44.98 16 25 O -1.02 -27.92 18.14 -127.81 -2.32 -30.24 16 26 O -1.00 -25.35 18.14 -127.81 -2.32 -27.67 16 27 N -1.09 -19.69 5.64 -152.03 -0.86 -20.55 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.23 5.55 -2.39 -0.01 1.21 16 31 H 0.15 0.07 8.09 -2.39 -0.02 0.06 16 32 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.41 5.72 8.47 -92.70 -0.79 4.94 16 34 H 0.05 1.39 7.95 -2.39 -0.02 1.37 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 2.23 8.05 -2.39 -0.02 2.21 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.01 0.78 7.95 -2.39 -0.02 0.77 16 39 H 0.01 0.50 6.80 -2.39 -0.02 0.49 16 40 H 0.26 15.90 6.06 -92.71 -0.56 15.34 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.02 0.76 7.70 -2.39 -0.02 0.74 16 43 H 0.11 0.12 7.82 -2.39 -0.02 0.10 16 44 H 0.16 -0.84 7.74 -2.39 -0.02 -0.86 16 45 H 0.17 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.17 -0.27 8.14 -2.38 -0.02 -0.29 16 47 H 0.43 9.93 7.07 -93.00 -0.66 9.27 16 Total: -1.00 -91.59 379.59 -3.57 -95.17 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -0.24 Total: 12.09 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.04 Total: -4.93 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -5.39 Total: -128.46 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -4.67 Total: -72.75 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.06 Total: 53.90 kcal Atomic # 16 Polarization: 45.35 SS G_CDS: -0.37 Total: 44.98 kcal Total: -91.59 -3.57 -95.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567417853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.546 kcal (2) G-P(sol) polarization free energy of solvation -91.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds