Wall clock time and date at job start Wed Apr 1 2020 03:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 108.58308 * 2 1 4 4 C 1.50701 * 109.47212 * 66.99929 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46983 * 180.02562 * 7 6 4 9 9 H 1.09000 * 110.64249 * 308.13967 * 8 7 6 10 10 C 1.55155 * 110.72172 * 185.00113 * 8 7 6 11 11 C 1.54910 * 101.58313 * 206.13099 * 10 8 7 12 12 N 1.47426 * 104.82786 * 37.01317 * 11 10 8 13 13 C 1.36940 * 125.64670 * 155.90578 * 12 11 10 14 14 H 1.08003 * 120.00034 * 179.97438 * 13 12 11 15 15 C 1.38815 * 120.00348 * 359.97438 * 13 12 11 16 16 N 1.31622 * 119.99550 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99952 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47048 * 90.00019 * 17 15 13 19 19 H 1.48500 * 109.46916 * 209.99596 * 17 15 13 20 20 H 1.48496 * 109.47366 * 329.99690 * 17 15 13 21 21 C 1.47018 * 108.70429 * 335.86546 * 12 11 10 22 22 C 1.53193 * 108.64481 * 241.99847 * 2 1 3 23 23 C 1.55560 * 106.24290 * 266.61788 * 22 2 1 24 24 S 1.83900 * 99.64040 * 323.01539 * 23 22 2 25 25 O 1.42098 * 111.46771 * 144.08788 * 24 23 22 26 26 O 1.42104 * 111.46437 * 284.13540 * 24 23 22 27 27 N 1.46458 * 108.50261 * 117.91917 * 2 1 3 28 28 H 1.09002 * 109.46991 * 60.70139 * 1 2 3 29 29 H 1.09000 * 109.47406 * 180.70163 * 1 2 3 30 30 H 1.09006 * 109.47184 * 300.70403 * 1 2 3 31 31 H 1.09002 * 109.47153 * 306.99931 * 3 2 1 32 32 H 1.09001 * 109.46832 * 187.00121 * 3 2 1 33 33 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 34 34 H 1.09001 * 109.47487 * 300.00114 * 7 6 4 35 35 H 1.09002 * 109.47182 * 60.00342 * 7 6 4 36 36 H 1.08995 * 111.00425 * 324.20847 * 10 8 7 37 37 H 1.08997 * 111.00436 * 88.06140 * 10 8 7 38 38 H 1.09001 * 110.36458 * 155.84412 * 11 10 8 39 39 H 1.08993 * 110.37310 * 278.17171 * 11 10 8 40 40 H 0.96999 * 119.99640 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.88813 * 241.64441 * 21 12 11 42 42 H 1.09001 * 109.88004 * 120.47806 * 21 12 11 43 43 H 1.09000 * 110.10527 * 25.81047 * 22 2 1 44 44 H 1.09000 * 110.10198 * 147.42695 * 22 2 1 45 45 H 1.09004 * 111.36828 * 80.61505 * 23 22 2 46 46 H 1.08997 * 111.37254 * 205.40878 * 23 22 2 47 47 H 0.96998 * 126.07970 * 299.26843 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0176 1.4502 0.0000 4 6 1.6514 2.1033 1.3079 5 8 1.0593 1.4709 2.1566 6 7 1.9830 3.3898 1.5347 7 6 1.6275 4.0245 2.8063 8 6 2.1150 5.4747 2.8063 9 1 3.1706 5.5253 2.5394 10 6 1.8654 6.1378 4.1866 11 6 1.7598 7.6338 3.7985 12 7 1.0588 7.6385 2.5016 13 6 0.3367 8.6828 1.9885 14 1 -0.1413 8.5869 1.0247 15 6 0.2190 9.8647 2.7070 16 7 0.8011 9.9813 3.8817 17 14 -0.7655 11.2893 2.0066 18 1 -2.1806 11.1745 2.4419 19 1 -0.1991 12.5712 2.4979 20 1 -0.6994 11.2550 0.5235 21 6 1.2642 6.3367 1.8499 22 6 2.0197 -0.6815 -1.2816 23 6 2.2423 -2.1782 -0.9208 24 16 2.8962 -1.9892 0.7876 25 8 2.4499 -3.0394 1.6344 26 8 4.2474 -1.5493 0.7815 27 7 1.9948 -0.6503 1.2272 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3634 0.5248 0.8836 31 1 1.5471 1.9917 -0.8207 32 1 3.1002 1.4695 -0.1253 33 1 2.4569 3.8954 0.8561 34 1 0.5449 4.0055 2.9319 35 1 2.0980 3.4827 3.6268 36 1 0.9347 5.7821 4.6283 37 1 2.7057 5.9673 4.8596 38 1 1.1814 8.1792 4.5442 39 1 2.7532 8.0698 3.6943 40 1 0.7185 10.8071 4.3839 41 1 1.7918 6.4738 0.9059 42 1 0.3026 5.8549 1.6730 43 1 1.2664 -0.5930 -2.0644 44 1 2.9568 -0.2321 -1.6103 45 1 1.3036 -2.7323 -0.9277 46 1 2.9782 -2.6403 -1.5789 47 1 1.8126 -0.3566 2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567417854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:30 Heat of formation + Delta-G solvation = -74.092163 kcal Electronic energy + Delta-G solvation = -28797.658596 eV Core-core repulsion = 24722.521274 eV Total energy + Delta-G solvation = -4075.137322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49776 -38.42601 -37.50077 -37.23397 -36.12209 -34.72219 -32.61876 -32.13265 -31.10747 -29.85535 -28.69076 -27.70025 -25.57833 -24.73728 -23.40315 -21.15147 -20.66384 -20.01804 -19.82492 -19.58790 -17.81108 -17.17088 -16.88464 -16.69498 -16.28455 -15.93551 -15.78588 -15.11586 -15.04362 -14.66781 -14.62566 -13.97285 -13.74668 -13.66412 -13.60081 -13.18844 -12.92920 -12.72782 -12.54909 -12.37696 -12.25063 -12.18165 -11.90484 -11.81733 -11.77709 -11.59059 -11.49780 -11.25354 -10.99153 -10.90974 -10.83195 -10.45793 -10.17138 -10.05615 -9.92957 -9.74928 -9.69714 -9.52302 -9.02621 -8.68626 -6.87356 -5.69059 -3.11010 -0.04390 2.32315 2.55309 3.07440 3.31468 3.37120 3.41877 3.44037 3.52122 3.83157 4.05480 4.18195 4.45111 4.48642 4.65077 4.73630 4.92723 4.98871 5.06118 5.13119 5.16554 5.21037 5.24548 5.33209 5.36190 5.48977 5.56137 5.66345 5.77240 5.84254 6.01709 6.05910 6.12103 6.30414 6.37574 6.50581 6.55137 6.67225 6.86115 7.12364 7.46191 7.47925 7.58761 7.82186 8.17359 8.32940 9.18350 9.79408 10.44037 11.34892 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002018 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.798987 B =13869.085658 C =14385.160556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.158 3.842 3 C -0.151 4.151 4 C 0.519 3.481 5 O -0.542 6.542 6 N -0.723 5.723 7 C 0.131 3.869 8 C -0.115 4.115 9 H 0.076 0.924 10 C -0.135 4.135 11 C 0.151 3.849 12 N -0.605 5.605 13 C -0.224 4.224 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.922 5.922 17 Si 0.915 3.085 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.143 3.857 22 C -0.118 4.118 23 C -0.593 4.593 24 S 2.563 3.437 25 O -0.963 6.963 26 O -0.956 6.956 27 N -1.076 6.076 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.402 0.598 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.017 0.983 42 H 0.023 0.977 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -23.214 -11.841 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.067 3.933 3 C -0.193 4.193 4 C 0.305 3.695 5 O -0.420 6.420 6 N -0.373 5.373 7 C 0.008 3.992 8 C -0.134 4.134 9 H 0.094 0.906 10 C -0.175 4.175 11 C 0.027 3.973 12 N -0.331 5.331 13 C -0.352 4.352 14 H 0.094 0.906 15 C -0.207 4.207 16 N -0.571 5.571 17 Si 0.746 3.254 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.208 1.208 21 C 0.017 3.983 22 C -0.157 4.157 23 C -0.724 4.724 24 S 2.657 3.343 25 O -0.952 6.952 26 O -0.945 6.945 27 N -0.849 5.849 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.236 0.764 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.041 0.959 43 H 0.132 0.868 44 H 0.117 0.883 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 3.808 -23.969 -10.642 26.501 hybrid contribution -0.690 1.455 -0.949 1.869 sum 3.118 -22.514 -11.591 25.514 Atomic orbital electron populations 1.22416 0.93009 1.02931 1.03914 1.20248 0.96701 0.92068 0.84259 1.22233 1.04050 0.95929 0.97101 1.20394 0.78491 0.81699 0.88883 1.90520 1.41526 1.62897 1.47087 1.46125 1.59224 1.12222 1.19750 1.21479 1.00650 0.92366 0.84693 1.22450 0.99751 0.92298 0.98939 0.90584 1.23006 1.00478 0.99774 0.94212 1.21936 0.95985 0.89768 0.89639 1.44509 1.59568 1.10545 1.18467 1.19066 1.23650 0.90947 1.01564 0.90553 1.24802 1.00777 0.98083 0.97045 1.69797 1.47926 1.26170 1.13158 0.86065 0.79531 0.81792 0.78047 1.21564 1.21630 1.20762 1.21321 0.95730 0.87430 0.93868 1.22530 1.05179 0.90609 0.97382 1.30772 1.13780 1.03705 1.24095 1.06567 0.75105 0.74714 0.77953 1.93611 1.81986 1.56334 1.63304 1.93656 1.34046 1.80705 1.86109 1.55285 1.71305 1.45027 1.13315 0.91869 0.92151 0.89613 0.87576 0.87883 0.76378 0.91171 0.91593 0.91852 0.92124 0.87530 0.97000 0.93688 0.96474 0.95881 0.86777 0.88272 0.84053 0.84233 0.70755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.25 37.16 0.31 -0.86 16 2 C 0.16 1.08 0.83 -131.74 -0.11 0.97 16 3 C -0.15 -1.04 4.74 -27.88 -0.13 -1.17 16 4 C 0.52 5.62 7.31 -10.98 -0.08 5.54 16 5 O -0.54 -7.33 11.80 5.56 0.07 -7.27 16 6 N -0.72 -7.96 5.47 -60.30 -0.33 -8.29 16 7 C 0.13 1.79 5.02 -4.04 -0.02 1.77 16 8 C -0.12 -1.82 2.96 -88.79 -0.26 -2.08 16 9 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 10 C -0.14 -2.45 6.53 -24.58 -0.16 -2.61 16 11 C 0.15 3.59 5.89 -2.53 -0.01 3.58 16 12 N -0.60 -15.12 3.39 -170.07 -0.58 -15.70 16 13 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 14 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 15 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 16 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 17 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.14 2.78 6.75 -3.07 -0.02 2.76 16 22 C -0.12 -0.44 5.56 -25.27 -0.14 -0.58 16 23 C -0.59 -2.36 7.66 38.52 0.29 -2.06 16 24 S 2.56 22.48 6.47 -107.50 -0.70 21.78 16 25 O -0.96 -12.12 18.14 -57.37 -1.04 -13.16 16 26 O -0.96 -11.46 18.14 -57.37 -1.04 -12.50 16 27 N -1.08 -9.85 5.59 0.59 0.00 -9.85 16 28 H 0.06 0.33 8.04 -51.93 -0.42 -0.08 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.86 6.05 -51.93 -0.31 0.55 16 31 H 0.11 0.48 8.13 -51.93 -0.42 0.05 16 32 H 0.10 0.59 7.98 -51.93 -0.41 0.18 16 33 H 0.40 3.64 8.47 -40.82 -0.35 3.30 16 34 H 0.07 1.07 7.93 -51.93 -0.41 0.65 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.14 8.05 -51.93 -0.42 0.73 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16 43 H 0.11 0.20 7.71 -51.93 -0.40 -0.20 16 44 H 0.10 0.26 7.72 -51.93 -0.40 -0.14 16 45 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.44 4.85 6.55 -40.36 -0.26 4.59 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -36.92 378.69 -10.41 -47.33 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.44 Total: 2.71 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.59 Total: -1.48 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.34 Total: -59.89 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -2.02 Total: -32.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 22.48 SS G_CDS: -0.70 Total: 21.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.92 -10.41 -47.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567417854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.764 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds