Wall clock time and date at job start Wed Apr 1 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 108.58308 * 2 1 4 4 C 1.50701 * 109.47212 * 66.99929 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46983 * 180.02562 * 7 6 4 9 9 H 1.09000 * 110.64249 * 308.13967 * 8 7 6 10 10 C 1.55155 * 110.72172 * 185.00113 * 8 7 6 11 11 C 1.54910 * 101.58313 * 206.13099 * 10 8 7 12 12 N 1.47426 * 104.82786 * 37.01317 * 11 10 8 13 13 C 1.36940 * 125.64670 * 155.90578 * 12 11 10 14 14 H 1.08003 * 120.00034 * 179.97438 * 13 12 11 15 15 C 1.38815 * 120.00348 * 359.97438 * 13 12 11 16 16 N 1.31622 * 119.99550 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99952 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47048 * 90.00019 * 17 15 13 19 19 H 1.48500 * 109.46916 * 209.99596 * 17 15 13 20 20 H 1.48496 * 109.47366 * 329.99690 * 17 15 13 21 21 C 1.47018 * 108.70429 * 335.86546 * 12 11 10 22 22 C 1.53193 * 108.64481 * 241.99847 * 2 1 3 23 23 C 1.55560 * 106.24290 * 266.61788 * 22 2 1 24 24 S 1.83900 * 99.64040 * 323.01539 * 23 22 2 25 25 O 1.42098 * 111.46771 * 144.08788 * 24 23 22 26 26 O 1.42104 * 111.46437 * 284.13540 * 24 23 22 27 27 N 1.46458 * 108.50261 * 117.91917 * 2 1 3 28 28 H 1.09002 * 109.46991 * 60.70139 * 1 2 3 29 29 H 1.09000 * 109.47406 * 180.70163 * 1 2 3 30 30 H 1.09006 * 109.47184 * 300.70403 * 1 2 3 31 31 H 1.09002 * 109.47153 * 306.99931 * 3 2 1 32 32 H 1.09001 * 109.46832 * 187.00121 * 3 2 1 33 33 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 34 34 H 1.09001 * 109.47487 * 300.00114 * 7 6 4 35 35 H 1.09002 * 109.47182 * 60.00342 * 7 6 4 36 36 H 1.08995 * 111.00425 * 324.20847 * 10 8 7 37 37 H 1.08997 * 111.00436 * 88.06140 * 10 8 7 38 38 H 1.09001 * 110.36458 * 155.84412 * 11 10 8 39 39 H 1.08993 * 110.37310 * 278.17171 * 11 10 8 40 40 H 0.96999 * 119.99640 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.88813 * 241.64441 * 21 12 11 42 42 H 1.09001 * 109.88004 * 120.47806 * 21 12 11 43 43 H 1.09000 * 110.10527 * 25.81047 * 22 2 1 44 44 H 1.09000 * 110.10198 * 147.42695 * 22 2 1 45 45 H 1.09004 * 111.36828 * 80.61505 * 23 22 2 46 46 H 1.08997 * 111.37254 * 205.40878 * 23 22 2 47 47 H 0.96998 * 126.07970 * 299.26843 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0176 1.4502 0.0000 4 6 1.6514 2.1033 1.3079 5 8 1.0593 1.4709 2.1566 6 7 1.9830 3.3898 1.5347 7 6 1.6275 4.0245 2.8063 8 6 2.1150 5.4747 2.8063 9 1 3.1706 5.5253 2.5394 10 6 1.8654 6.1378 4.1866 11 6 1.7598 7.6338 3.7985 12 7 1.0588 7.6385 2.5016 13 6 0.3367 8.6828 1.9885 14 1 -0.1413 8.5869 1.0247 15 6 0.2190 9.8647 2.7070 16 7 0.8011 9.9813 3.8817 17 14 -0.7655 11.2893 2.0066 18 1 -2.1806 11.1745 2.4419 19 1 -0.1991 12.5712 2.4979 20 1 -0.6994 11.2550 0.5235 21 6 1.2642 6.3367 1.8499 22 6 2.0197 -0.6815 -1.2816 23 6 2.2423 -2.1782 -0.9208 24 16 2.8962 -1.9892 0.7876 25 8 2.4499 -3.0394 1.6344 26 8 4.2474 -1.5493 0.7815 27 7 1.9948 -0.6503 1.2272 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3634 0.5248 0.8836 31 1 1.5471 1.9917 -0.8207 32 1 3.1002 1.4695 -0.1253 33 1 2.4569 3.8954 0.8561 34 1 0.5449 4.0055 2.9319 35 1 2.0980 3.4827 3.6268 36 1 0.9347 5.7821 4.6283 37 1 2.7057 5.9673 4.8596 38 1 1.1814 8.1792 4.5442 39 1 2.7532 8.0698 3.6943 40 1 0.7185 10.8071 4.3839 41 1 1.7918 6.4738 0.9059 42 1 0.3026 5.8549 1.6730 43 1 1.2664 -0.5930 -2.0644 44 1 2.9568 -0.2321 -1.6103 45 1 1.3036 -2.7323 -0.9277 46 1 2.9782 -2.6403 -1.5789 47 1 1.8126 -0.3566 2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567417854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:29 Heat of formation + Delta-G solvation = -104.573757 kcal Electronic energy + Delta-G solvation = -28798.980377 eV Core-core repulsion = 24722.521274 eV Total energy + Delta-G solvation = -4076.459103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24733 -39.54896 -38.57076 -38.00499 -36.88084 -35.96436 -34.31112 -32.57981 -32.03507 -31.29391 -29.97122 -28.63676 -27.16684 -25.51932 -24.64372 -22.26338 -21.59285 -21.37102 -20.80704 -20.45525 -18.89524 -18.46028 -17.83064 -17.38803 -17.24767 -16.83126 -16.67982 -16.55778 -16.07973 -15.78419 -15.54711 -15.23924 -14.73244 -14.50569 -14.26832 -14.09990 -13.95534 -13.57000 -13.52872 -13.47788 -13.27635 -13.18476 -13.11098 -13.04361 -12.84444 -12.70848 -12.61922 -12.43007 -12.08040 -12.01916 -11.86137 -11.82206 -11.76475 -11.57745 -11.38745 -11.36567 -10.74763 -10.61660 -10.29131 -9.99387 -8.87912 -7.77532 -5.21731 -0.62406 1.46673 1.48568 1.57095 1.69589 1.79460 2.27236 2.49776 2.74940 3.09478 3.32383 3.40662 3.58445 3.65191 3.71793 3.80148 3.99632 4.01308 4.05541 4.12614 4.31863 4.46339 4.54933 4.63363 4.66670 4.71429 4.75927 4.78876 4.84057 4.91510 4.93033 4.96927 5.05790 5.10598 5.12548 5.32357 5.36308 5.45381 5.49687 5.62493 5.65371 5.82665 6.31738 6.34932 6.64789 7.11019 7.36952 7.79442 8.42912 9.24540 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002018 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.798987 B =13869.085658 C =14385.160556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 C -0.148 4.148 4 C 0.511 3.489 5 O -0.573 6.573 6 N -0.720 5.720 7 C 0.145 3.855 8 C -0.094 4.094 9 H 0.094 0.906 10 C -0.124 4.124 11 C 0.152 3.848 12 N -0.629 5.629 13 C -0.238 4.238 14 H 0.082 0.918 15 C -0.070 4.070 16 N -0.950 5.950 17 Si 0.980 3.020 18 H -0.287 1.287 19 H -0.295 1.295 20 H -0.268 1.268 21 C 0.140 3.860 22 C -0.116 4.116 23 C -0.551 4.551 24 S 2.545 3.455 25 O -1.016 7.016 26 O -0.999 6.999 27 N -1.086 6.086 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.139 0.861 32 H 0.119 0.881 33 H 0.414 0.586 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.069 0.931 39 H -0.011 1.011 40 H 0.246 0.754 41 H 0.031 0.969 42 H 0.022 0.978 43 H 0.149 0.851 44 H 0.118 0.882 45 H 0.162 0.838 46 H 0.173 0.827 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -24.497 -15.546 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 C -0.189 4.189 4 C 0.299 3.701 5 O -0.453 6.453 6 N -0.372 5.372 7 C 0.021 3.979 8 C -0.113 4.113 9 H 0.113 0.887 10 C -0.163 4.163 11 C 0.027 3.973 12 N -0.355 5.355 13 C -0.367 4.367 14 H 0.100 0.900 15 C -0.263 4.263 16 N -0.600 5.600 17 Si 0.809 3.191 18 H -0.214 1.214 19 H -0.221 1.221 20 H -0.193 1.193 21 C 0.015 3.985 22 C -0.155 4.155 23 C -0.686 4.686 24 S 2.645 3.355 25 O -1.005 7.005 26 O -0.988 6.988 27 N -0.857 5.857 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.137 0.863 33 H 0.250 0.750 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.007 0.993 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.040 0.960 43 H 0.167 0.833 44 H 0.136 0.864 45 H 0.180 0.820 46 H 0.190 0.810 47 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 3.799 -25.282 -14.350 29.317 hybrid contribution -0.733 1.832 0.148 1.979 sum 3.066 -23.449 -14.201 27.585 Atomic orbital electron populations 1.22409 0.93393 1.03105 1.03343 1.20604 0.96548 0.92389 0.84680 1.22351 1.05317 0.95854 0.95386 1.21203 0.77598 0.81227 0.90076 1.90528 1.42789 1.63509 1.48512 1.46039 1.59499 1.12608 1.19045 1.21112 0.99413 0.91019 0.86385 1.22281 1.00158 0.92699 0.96181 0.88745 1.22844 1.01540 0.95860 0.96082 1.21717 0.93864 0.93023 0.88714 1.44841 1.59395 1.11889 1.19419 1.19466 1.23553 0.91891 1.01772 0.90035 1.25661 1.02282 1.00744 0.97584 1.70064 1.49356 1.26291 1.14332 0.85044 0.77820 0.78266 0.77999 1.21368 1.22139 1.19278 1.21493 0.96462 0.85643 0.94873 1.22728 1.07257 0.89424 0.96103 1.30586 1.15003 1.05037 1.17972 1.06855 0.74472 0.73825 0.80327 1.93538 1.82352 1.57762 1.66887 1.93594 1.36555 1.81029 1.87669 1.55301 1.71136 1.45530 1.13709 0.89425 0.91595 0.93183 0.84315 0.86319 0.75013 0.92991 0.91365 0.92076 0.89592 0.91258 0.99256 0.94399 0.95143 0.96006 0.83302 0.86356 0.81996 0.80959 0.72190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.25 71.98 0.59 -1.33 16 2 C 0.15 1.58 0.83 3.67 0.00 1.58 16 3 C -0.15 -1.54 4.74 29.85 0.14 -1.40 16 4 C 0.51 10.26 7.31 87.66 0.64 10.90 16 5 O -0.57 -15.50 11.80 -3.03 -0.04 -15.53 16 6 N -0.72 -14.45 5.47 -463.06 -2.53 -16.98 16 7 C 0.15 3.77 5.02 86.38 0.43 4.21 16 8 C -0.09 -2.83 2.96 -9.61 -0.03 -2.86 16 9 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 10 C -0.12 -4.43 6.53 31.99 0.21 -4.22 16 11 C 0.15 7.39 5.89 86.86 0.51 7.90 16 12 N -0.63 -31.75 3.39 -691.99 -2.35 -34.10 16 13 C -0.24 -13.17 10.27 84.03 0.86 -12.30 16 14 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 15 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 16 N -0.95 -56.67 10.09 21.65 0.22 -56.45 16 17 Si 0.98 45.25 29.55 68.60 2.03 47.28 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 C 0.14 5.32 6.75 86.73 0.59 5.90 16 22 C -0.12 -0.25 5.56 31.54 0.18 -0.08 16 23 C -0.55 -1.95 7.66 72.86 0.56 -1.39 16 24 S 2.55 43.16 6.47 -56.49 -0.37 42.79 16 25 O -1.02 -26.60 18.14 -127.81 -2.32 -28.92 16 26 O -1.00 -23.89 18.14 -127.81 -2.32 -26.21 16 27 N -1.09 -19.29 5.59 -152.03 -0.85 -20.14 16 28 H 0.09 0.57 8.04 -2.39 -0.02 0.55 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.97 6.05 -2.38 -0.01 0.96 16 31 H 0.14 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.12 0.92 7.98 -2.39 -0.02 0.90 16 33 H 0.41 6.31 8.47 -92.71 -0.79 5.53 16 34 H 0.05 1.56 7.93 -2.39 -0.02 1.54 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.21 8.05 -2.39 -0.02 2.19 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.07 3.90 5.87 -2.39 -0.01 3.89 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.02 0.84 7.68 -2.39 -0.02 0.82 16 43 H 0.15 -0.53 7.71 -2.39 -0.02 -0.55 16 44 H 0.12 -0.08 7.72 -2.39 -0.02 -0.10 16 45 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.17 -0.33 8.14 -2.39 -0.02 -0.35 16 47 H 0.43 9.90 6.55 -93.00 -0.61 9.29 16 Total: -1.00 -86.25 378.69 -3.78 -90.03 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.40 Total: 14.85 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.15 Total: 3.40 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -5.51 Total: -127.68 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -4.67 Total: -70.67 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 43.16 SS G_CDS: -0.37 Total: 42.79 kcal Total: -86.25 -3.78 -90.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567417854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.544 kcal (2) G-P(sol) polarization free energy of solvation -86.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds