Wall clock time and date at job start Wed Apr 1 2020 03:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 108.58364 * 2 1 4 4 C 1.50706 * 109.46767 * 64.29927 * 3 2 1 5 5 O 1.21282 * 120.00229 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99821 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99822 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47128 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47360 * 180.02562 * 8 7 6 10 10 C 1.36936 * 119.99470 * 269.99721 * 9 8 7 11 11 H 1.08006 * 119.99646 * 140.88588 * 10 9 8 12 12 C 1.38812 * 120.00664 * 320.88402 * 10 9 8 13 13 N 1.31611 * 120.00136 * 156.82509 * 12 10 9 14 14 Si 1.86794 * 119.99843 * 336.83136 * 12 10 9 15 15 H 1.48505 * 109.47533 * 92.01889 * 14 12 10 16 16 H 1.48494 * 109.47377 * 212.02119 * 14 12 10 17 17 H 1.48506 * 109.47091 * 332.02248 * 14 12 10 18 18 C 1.46494 * 120.00146 * 90.00233 * 9 8 7 19 19 C 1.53002 * 117.49758 * 184.01701 * 18 9 8 20 20 C 1.53000 * 60.00026 * 252.50668 * 19 18 9 21 21 C 1.53202 * 108.64828 * 242.00199 * 2 1 3 22 22 C 1.55559 * 106.24282 * 266.61674 * 21 2 1 23 23 S 1.83898 * 99.64062 * 323.00956 * 22 21 2 24 24 O 1.42098 * 111.46779 * 144.08477 * 23 22 21 25 25 O 1.42094 * 111.46701 * 283.93786 * 23 22 21 26 26 N 1.46454 * 108.64905 * 117.99775 * 2 1 3 27 27 H 1.08995 * 109.47254 * 60.70117 * 1 2 3 28 28 H 1.09005 * 109.47253 * 180.70218 * 1 2 3 29 29 H 1.09002 * 109.47315 * 300.69860 * 1 2 3 30 30 H 1.08997 * 109.47268 * 304.30126 * 3 2 1 31 31 H 1.08999 * 109.47128 * 184.29614 * 3 2 1 32 32 H 0.97002 * 119.99671 * 0.02562 * 6 4 3 33 33 H 1.08993 * 109.47417 * 300.00303 * 7 6 4 34 34 H 1.09005 * 109.46944 * 60.00843 * 7 6 4 35 35 H 1.09011 * 109.47099 * 300.00338 * 8 7 6 36 36 H 1.08999 * 109.47036 * 59.99742 * 8 7 6 37 37 H 0.97005 * 120.00176 * 180.02562 * 13 12 10 38 38 H 1.09000 * 115.55101 * 329.71763 * 18 9 8 39 39 H 1.08997 * 117.49952 * 359.97438 * 19 18 9 40 40 H 1.09001 * 117.50011 * 145.01231 * 19 18 9 41 41 H 1.09000 * 117.49616 * 252.50897 * 20 19 18 42 42 H 1.08999 * 117.49691 * 107.48711 * 20 19 18 43 43 H 1.09001 * 110.09430 * 25.81329 * 21 2 1 44 44 H 1.08997 * 110.10202 * 147.42182 * 21 2 1 45 45 H 1.08999 * 111.36629 * 80.61001 * 22 21 2 46 46 H 1.09000 * 111.36854 * 205.40537 * 22 21 2 47 47 H 0.97000 * 126.08606 * 299.16489 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5935 2.1227 1.2803 5 8 0.9638 1.5029 2.1112 6 7 1.9141 3.4129 1.5021 7 6 1.5015 4.0667 2.7464 8 6 1.9881 5.5173 2.7460 9 7 1.5759 6.1710 3.9906 10 6 0.3700 6.8163 4.0581 11 1 -0.2300 6.7470 4.9535 12 6 -0.0812 7.5595 2.9761 13 7 -1.3679 7.7942 2.8296 14 14 1.1379 8.2265 1.7278 15 1 1.2955 7.2507 0.6194 16 1 0.6363 9.5147 1.1855 17 1 2.4512 8.4442 2.3859 18 6 2.4539 6.1345 5.1627 19 6 1.9275 6.7533 6.4592 20 6 3.0224 7.4646 5.6614 21 6 2.0198 -0.6814 -1.2817 22 6 2.2425 -2.1782 -0.9209 23 16 2.8964 -1.9892 0.7874 24 8 2.4501 -3.0394 1.6342 25 8 4.2489 -1.5536 0.7813 26 7 1.9983 -0.6514 1.2252 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3634 0.5246 0.8837 30 1 1.5844 1.9792 -0.8489 31 1 3.1047 1.4680 -0.0770 32 1 2.4174 3.9086 0.8374 33 1 0.4144 4.0485 2.8232 34 1 1.9347 3.5381 3.5956 35 1 3.0753 5.5358 2.6689 36 1 1.5546 6.0456 1.8968 37 1 -1.6833 8.3133 2.0732 38 1 3.0888 5.2525 5.2472 39 1 0.9282 7.1880 6.4399 40 1 2.2160 6.2784 7.3969 41 1 4.0311 7.4576 6.0743 42 1 2.7430 8.3668 5.1173 43 1 1.2664 -0.5928 -2.0644 44 1 2.9569 -0.2320 -1.6103 45 1 1.3038 -2.7322 -0.9279 46 1 2.9784 -2.6401 -1.5791 47 1 1.8190 -0.3585 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567453471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:54 Heat of formation + Delta-G solvation = -43.429369 kcal Electronic energy + Delta-G solvation = -29115.416264 eV Core-core repulsion = 25041.608581 eV Total energy + Delta-G solvation = -4073.807683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -40.29997 -38.10138 -37.33973 -37.16299 -36.05567 -34.96203 -33.29741 -32.05763 -31.58002 -30.83128 -28.70529 -27.17277 -24.79281 -24.18550 -22.42780 -21.46194 -20.94178 -20.28228 -19.74116 -19.68346 -17.72457 -17.13228 -16.77685 -16.19621 -16.15677 -15.85355 -15.75212 -15.36310 -15.22024 -14.96386 -14.42334 -14.01739 -13.80686 -13.66596 -13.56817 -13.29178 -12.82028 -12.69634 -12.58420 -12.30793 -12.28399 -12.18210 -12.17499 -11.92241 -11.78963 -11.70305 -11.42312 -11.14230 -10.93950 -10.83748 -10.78578 -10.48467 -10.11175 -9.96989 -9.64835 -9.61558 -9.56636 -9.45534 -8.76433 -8.58639 -6.85956 -6.13740 -3.57628 0.03431 2.40889 2.76221 3.13533 3.24586 3.35305 3.40646 3.41350 3.61034 3.92060 4.14067 4.28532 4.37795 4.59462 4.69106 4.78833 4.81430 4.90992 5.00927 5.12163 5.15734 5.19076 5.26254 5.36454 5.45125 5.67564 5.69433 5.72764 5.74842 5.88847 5.94225 6.01916 6.12024 6.27426 6.38593 6.41055 6.54402 6.62667 6.77732 6.88211 7.06782 7.18978 7.68761 7.91813 8.29237 8.39718 8.84706 9.55800 9.95036 11.00791 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.002644 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.342912 B =10586.780512 C =11357.051782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.159 3.841 3 C -0.151 4.151 4 C 0.516 3.484 5 O -0.539 6.539 6 N -0.724 5.724 7 C 0.100 3.900 8 C 0.128 3.872 9 N -0.568 5.568 10 C -0.274 4.274 11 H 0.084 0.916 12 C 0.042 3.958 13 N -0.891 5.891 14 Si 0.874 3.126 15 H -0.285 1.285 16 H -0.300 1.300 17 H -0.266 1.266 18 C 0.118 3.882 19 C -0.187 4.187 20 C -0.222 4.222 21 C -0.118 4.118 22 C -0.594 4.594 23 S 2.566 3.434 24 O -0.963 6.963 25 O -0.957 6.957 26 N -1.077 6.077 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.396 0.604 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.265 0.735 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.333 -16.108 -11.786 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.068 3.932 3 C -0.193 4.193 4 C 0.302 3.698 5 O -0.417 6.417 6 N -0.374 5.374 7 C -0.025 4.025 8 C 0.002 3.998 9 N -0.286 5.286 10 C -0.403 4.403 11 H 0.102 0.898 12 C -0.160 4.160 13 N -0.530 5.530 14 Si 0.703 3.297 15 H -0.213 1.213 16 H -0.227 1.227 17 H -0.191 1.191 18 C 0.009 3.991 19 C -0.225 4.225 20 C -0.263 4.263 21 C -0.157 4.157 22 C -0.724 4.724 23 S 2.660 3.340 24 O -0.953 6.953 25 O -0.946 6.946 26 N -0.849 5.849 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.230 0.770 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.117 0.883 45 H 0.159 0.841 46 H 0.157 0.843 47 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 8.417 -16.987 -10.742 21.790 hybrid contribution 0.270 1.256 -1.275 1.810 sum 8.687 -15.731 -12.018 21.618 Atomic orbital electron populations 1.22459 0.92916 1.02889 1.04274 1.20242 0.96787 0.92066 0.84070 1.22230 1.03662 0.95772 0.97646 1.20362 0.79275 0.81900 0.88297 1.90555 1.40191 1.63866 1.47121 1.46134 1.57098 1.11879 1.22312 1.22250 1.01626 0.94373 0.84270 1.21373 0.97107 0.90577 0.90740 1.43511 1.18359 1.59251 1.07520 1.18736 0.92707 1.25259 1.03557 0.89840 1.25520 0.95426 0.96939 0.98137 1.69875 1.12645 1.40069 1.30448 0.87034 0.83201 0.78209 0.81206 1.21290 1.22725 1.19088 1.21189 0.95840 0.93437 0.88595 1.23067 0.99907 1.05239 0.94278 1.23368 0.96385 1.00211 1.06301 1.22527 1.05101 0.90577 0.97472 1.30774 1.13753 1.03726 1.24135 1.06441 0.75034 0.74634 0.77908 1.93609 1.82019 1.56346 1.63316 1.93649 1.34010 1.80868 1.86117 1.55154 1.71291 1.45073 1.13370 0.91979 0.92268 0.89058 0.87770 0.88025 0.77040 0.90501 0.92123 0.93556 0.91947 0.92505 0.88974 0.87838 0.90378 0.90744 0.89266 0.86830 0.88346 0.84057 0.84297 0.70903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 8.23 37.16 0.31 -1.19 16 2 C 0.16 1.33 0.83 -131.74 -0.11 1.22 16 3 C -0.15 -1.30 4.70 -27.88 -0.13 -1.43 16 4 C 0.52 6.86 7.30 -10.98 -0.08 6.78 16 5 O -0.54 -8.76 11.79 5.56 0.07 -8.70 16 6 N -0.72 -10.07 5.56 -60.29 -0.33 -10.41 16 7 C 0.10 1.79 6.00 -4.04 -0.02 1.76 16 8 C 0.13 2.49 4.68 -4.04 -0.02 2.47 16 9 N -0.57 -12.64 2.38 -165.66 -0.39 -13.03 16 10 C -0.27 -7.21 8.93 -15.06 -0.13 -7.35 16 11 H 0.08 2.40 6.86 -52.48 -0.36 2.04 16 12 C 0.04 1.13 5.28 -17.43 -0.09 1.04 16 13 N -0.89 -25.92 13.97 55.49 0.78 -25.15 16 14 Si 0.87 20.67 25.32 -169.99 -4.30 16.37 16 15 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 16 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.12 2.29 6.57 -67.93 -0.45 1.84 16 19 C -0.19 -3.49 9.80 -26.73 -0.26 -3.75 16 20 C -0.22 -4.11 10.35 -26.73 -0.28 -4.39 16 21 C -0.12 -0.58 5.56 -25.27 -0.14 -0.72 16 22 C -0.59 -2.94 7.66 38.52 0.29 -2.65 16 23 S 2.57 25.09 6.46 -107.50 -0.69 24.40 16 24 O -0.96 -13.06 18.14 -57.40 -1.04 -14.10 16 25 O -0.96 -12.30 18.14 -57.40 -1.04 -13.34 16 26 N -1.08 -11.34 5.61 0.60 0.00 -11.33 16 27 H 0.06 0.44 8.04 -51.93 -0.42 0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.13 5.80 -51.93 -0.30 0.83 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.40 4.45 8.47 -40.82 -0.35 4.10 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.79 8.07 -51.92 -0.42 0.37 16 36 H 0.06 1.32 3.45 -51.93 -0.18 1.14 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.10 2.18 6.44 -51.93 -0.33 1.85 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 43 H 0.11 0.33 7.71 -51.93 -0.40 -0.07 16 44 H 0.10 0.36 7.77 -51.93 -0.40 -0.05 16 45 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.44 5.51 6.79 -40.19 -0.27 5.24 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -35.83 381.18 -9.58 -45.42 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.25 Total: 10.49 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.11 Total: -6.36 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.05 Total: -59.92 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -2.02 Total: -36.14 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.30 Total: 16.37 kcal Atomic # 16 Polarization: 25.09 SS G_CDS: -0.69 Total: 24.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.83 -9.58 -45.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567453471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.990 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds