Wall clock time and date at job start Wed Apr 1 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 110.65845 * 2 1 4 4 C 1.53001 * 109.47189 * 302.91242 * 3 2 1 5 5 C 1.53003 * 109.47581 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47113 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00407 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99973 * 179.97438 * 6 5 4 9 9 C 1.39932 * 120.00351 * 174.71400 * 8 6 5 10 10 C 1.39298 * 119.94812 * 321.03502 * 9 8 6 11 11 C 1.38482 * 120.42700 * 179.76169 * 10 9 8 12 12 C 1.37686 * 120.32372 * 0.50856 * 11 10 9 13 13 C 1.40739 * 119.88327 * 359.74624 * 12 11 10 14 14 C 1.41410 * 120.20745 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99742 * 157.88781 * 14 13 12 16 16 C 1.39924 * 120.00206 * 337.88369 * 14 13 12 17 17 N 1.30829 * 119.99889 * 331.87427 * 16 14 13 18 18 Si 1.86806 * 120.00193 * 151.87927 * 16 14 13 19 19 H 1.48499 * 109.47323 * 94.98851 * 18 16 14 20 20 H 1.48499 * 109.46917 * 214.98855 * 18 16 14 21 21 H 1.48499 * 109.46689 * 334.98460 * 18 16 14 22 22 C 1.38240 * 119.94610 * 141.30484 * 9 8 6 23 23 N 1.47315 * 110.70456 * 237.14019 * 2 1 3 24 24 C 1.34527 * 106.62028 * 241.77649 * 23 2 1 25 25 O 1.21538 * 123.76851 * 179.76660 * 24 23 2 26 26 N 1.33788 * 112.45669 * 359.75741 * 24 23 2 27 27 C 1.34768 * 111.64969 * 0.02562 * 26 24 23 28 28 O 1.21231 * 127.16124 * 179.97438 * 27 26 24 29 29 H 1.08994 * 109.47585 * 297.79321 * 1 2 3 30 30 H 1.09005 * 109.46928 * 57.78609 * 1 2 3 31 31 H 1.08996 * 109.47396 * 177.78386 * 1 2 3 32 32 H 1.09004 * 109.47279 * 62.90696 * 3 2 1 33 33 H 1.08995 * 109.47584 * 182.91251 * 3 2 1 34 34 H 1.09004 * 109.46563 * 299.99891 * 4 3 2 35 35 H 1.08999 * 109.47262 * 59.99809 * 4 3 2 36 36 H 1.09003 * 109.46592 * 299.99907 * 5 4 3 37 37 H 1.08999 * 109.47167 * 59.99520 * 5 4 3 38 38 H 0.97007 * 119.99964 * 354.72124 * 8 6 5 39 39 H 1.08000 * 119.78086 * 0.02562 * 10 9 8 40 40 H 1.07996 * 119.83793 * 180.28271 * 11 10 9 41 41 H 1.08002 * 120.05984 * 179.72862 * 12 11 10 42 42 H 0.97011 * 120.00106 * 180.02562 * 17 16 14 43 43 H 1.07999 * 120.16090 * 359.97438 * 22 9 8 44 44 H 0.97001 * 126.68228 * 61.49855 * 23 2 1 45 45 H 0.97004 * 124.17487 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 6 1.5163 2.1853 -1.2110 5 6 2.0565 3.6168 -1.2114 6 6 1.5118 4.3589 -2.4045 7 8 0.7654 3.7980 -3.1786 8 7 1.8541 5.6460 -2.6114 9 6 1.4390 6.3020 -3.7756 10 6 1.4300 5.6220 -4.9914 11 6 1.0165 6.2601 -6.1488 12 6 0.6192 7.5779 -6.1121 13 6 0.6281 8.2792 -4.8919 14 6 0.2220 9.6330 -4.8464 15 1 -0.1135 10.0651 -3.9151 16 6 0.2549 10.4127 -6.0078 17 7 1.1163 10.1407 -6.9541 18 14 -0.9311 11.8422 -6.2070 19 1 -0.2702 13.0983 -5.7703 20 1 -1.3274 11.9614 -7.6332 21 1 -2.1384 11.6032 -5.3761 22 6 1.0438 7.6254 -3.7184 23 7 2.0508 -0.7477 -1.1575 24 6 2.7571 -1.7801 -0.6626 25 8 3.3228 -2.6046 -1.3535 26 7 2.7673 -1.7977 0.6752 27 6 2.0629 -0.7712 1.1913 28 8 1.8882 -0.5194 2.3642 29 1 -0.3634 0.4791 0.9090 30 1 -0.3633 0.5479 -0.8695 31 1 -0.3634 -1.0268 -0.0397 32 1 1.7600 1.9367 0.9149 33 1 3.1582 1.4096 -0.0522 34 1 1.8260 1.6802 -2.1259 35 1 0.4277 2.2074 -1.1588 36 1 1.7471 4.1221 -0.2965 37 1 3.1450 3.5943 -1.2638 38 1 2.3884 6.1176 -1.9532 39 1 1.7436 4.5893 -5.0307 40 1 1.0090 5.7225 -7.0854 41 1 0.3016 8.0726 -7.0180 42 1 1.1394 10.6815 -7.7592 43 1 1.0542 8.1546 -2.7770 44 1 1.9084 -0.5387 -2.0940 45 1 3.2245 -2.4672 1.2078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569187100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:08 Heat of formation + Delta-G solvation = -101.074635 kcal Electronic energy + Delta-G solvation = -28711.277499 eV Core-core repulsion = 24499.526178 eV Total energy + Delta-G solvation = -4211.751321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.54804 -41.13958 -39.78621 -39.06117 -38.00288 -36.36854 -36.03270 -34.86001 -34.13744 -31.84806 -31.75649 -30.15603 -28.18159 -27.15424 -26.11018 -24.12123 -23.51194 -22.80463 -22.27665 -21.41733 -21.00110 -19.39177 -19.25620 -18.15548 -17.68745 -17.50629 -17.40369 -16.94723 -16.90284 -16.71995 -16.61129 -16.40028 -15.81782 -15.34744 -15.27636 -15.09986 -14.66602 -14.53368 -14.13871 -14.08790 -13.56314 -13.53342 -13.26542 -13.06573 -12.94163 -12.76971 -12.65435 -12.49651 -12.34434 -12.27241 -11.98057 -11.89626 -11.59511 -11.52855 -11.51375 -11.21652 -11.11045 -10.81585 -10.60094 -10.50420 -9.45092 -8.76071 -8.72534 -6.32282 0.49919 0.90288 0.99130 1.39304 1.41052 1.48450 1.56947 1.87320 1.92151 2.09415 2.20326 2.36148 2.69973 2.88887 3.46381 3.66683 3.70542 3.81660 4.14426 4.22642 4.25729 4.41570 4.54732 4.63607 4.66242 4.70064 4.75531 4.81958 4.90192 5.00656 5.03298 5.04110 5.11802 5.16037 5.24804 5.27954 5.34650 5.42646 5.75647 5.76930 5.86564 5.88533 6.06538 6.11008 6.31112 6.34999 6.63207 6.77425 6.91747 6.99927 7.08706 7.40776 8.26242 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029062 B = 0.001715 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.239195 B =16324.556660 C =16810.273619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.125 3.875 3 C -0.106 4.106 4 C -0.101 4.101 5 C -0.128 4.128 6 C 0.500 3.500 7 O -0.569 6.569 8 N -0.666 5.666 9 C 0.169 3.831 10 C -0.242 4.242 11 C -0.094 4.094 12 C -0.207 4.207 13 C 0.097 3.903 14 C -0.502 4.502 15 H 0.080 0.920 16 C 0.045 3.955 17 N -0.809 5.809 18 Si 0.974 3.026 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.262 4.262 23 N -0.704 5.704 24 C 0.706 3.294 25 O -0.586 6.586 26 N -0.672 5.672 27 C 0.540 3.460 28 O -0.485 6.485 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.419 0.581 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.291 0.709 43 H 0.108 0.892 44 H 0.447 0.553 45 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 -15.766 15.881 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.167 4.167 6 C 0.290 3.710 7 O -0.447 6.447 8 N -0.313 5.313 9 C 0.076 3.924 10 C -0.263 4.263 11 C -0.113 4.113 12 C -0.226 4.226 13 C 0.094 3.906 14 C -0.530 4.530 15 H 0.098 0.902 16 C -0.173 4.173 17 N -0.433 5.433 18 Si 0.795 3.205 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.284 4.284 23 N -0.369 5.369 24 C 0.405 3.595 25 O -0.463 6.463 26 N -0.342 5.342 27 C 0.326 3.674 28 O -0.355 6.355 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.257 0.743 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.294 0.706 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 2.000 -16.360 15.401 22.557 hybrid contribution 0.106 0.604 -0.526 0.808 sum 2.106 -15.755 14.875 21.770 Atomic orbital electron populations 1.22111 0.88956 1.04127 1.05750 1.21578 0.98083 0.94043 0.82810 1.21795 1.01833 0.90039 1.00786 1.21331 1.01761 0.93083 0.97740 1.21712 1.03545 0.95939 0.95501 1.21762 0.79965 0.81181 0.88076 1.90706 1.36839 1.67904 1.49223 1.43571 1.53931 1.12942 1.20818 1.17425 0.97408 0.91531 0.86039 1.20322 1.14675 0.99412 0.91851 1.20765 0.98788 0.94568 0.97210 1.21108 1.09270 0.93990 0.98281 1.17722 0.88009 0.93502 0.91402 1.19741 1.41023 0.95560 0.96699 0.90193 1.26754 0.94960 1.01341 0.94230 1.69928 1.27761 1.37862 1.07737 0.85324 0.79124 0.77334 0.78761 1.18330 1.19122 1.18311 1.20854 1.13735 0.95152 0.98656 1.45776 1.53678 1.27451 1.10038 1.15929 0.79468 0.82251 0.81855 1.91051 1.50503 1.43051 1.61666 1.44253 1.51336 1.30437 1.08220 1.20877 0.76449 0.80369 0.89734 1.90844 1.57368 1.69729 1.17578 0.88806 0.89017 0.91352 0.87430 0.89679 0.91766 0.90507 0.85672 0.86304 0.74337 0.88184 0.87452 0.88827 0.89810 0.87397 0.70631 0.71708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.62 71.98 0.62 -0.66 16 2 C 0.13 1.23 1.01 2.98 0.00 1.23 16 3 C -0.11 -0.86 4.58 30.59 0.14 -0.72 16 4 C -0.10 -1.24 4.00 30.60 0.12 -1.12 16 5 C -0.13 -1.75 5.70 29.85 0.17 -1.58 16 6 C 0.50 13.88 7.53 87.65 0.66 14.54 16 7 O -0.57 -21.01 14.06 -3.03 -0.04 -21.05 16 8 N -0.67 -20.55 5.32 -303.66 -1.62 -22.16 16 9 C 0.17 7.30 6.15 38.10 0.23 7.54 16 10 C -0.24 -11.19 8.66 22.58 0.20 -11.00 16 11 C -0.09 -4.61 10.02 22.20 0.22 -4.38 16 12 C -0.21 -11.06 8.76 22.75 0.20 -10.86 16 13 C 0.10 5.19 5.57 -21.31 -0.12 5.07 16 14 C -0.50 -26.55 8.99 23.46 0.21 -26.34 16 15 H 0.08 4.05 7.98 -2.91 -0.02 4.03 16 16 C 0.05 2.23 4.90 85.25 0.42 2.65 16 17 N -0.81 -41.57 11.48 21.82 0.25 -41.32 16 18 Si 0.97 37.10 29.64 68.60 2.03 39.14 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 20 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 22 C -0.26 -12.48 9.71 22.85 0.22 -12.26 16 23 N -0.70 -8.18 5.62 -439.82 -2.47 -10.65 16 24 C 0.71 11.41 8.99 179.44 1.61 13.02 16 25 O -0.59 -14.41 18.04 -3.84 -0.07 -14.48 16 26 N -0.67 -8.01 5.70 -441.12 -2.52 -10.53 16 27 C 0.54 6.83 7.48 87.94 0.66 7.49 16 28 O -0.49 -8.52 18.02 -2.88 -0.05 -8.57 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.79 6.38 -2.38 -0.02 0.77 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.93 7.35 -2.38 -0.02 0.92 16 35 H 0.08 1.07 6.38 -2.39 -0.02 1.05 16 36 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.42 9.57 8.83 -92.70 -0.82 8.75 16 39 H 0.10 4.48 6.82 -2.91 -0.02 4.46 16 40 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.09 5.18 6.38 -2.91 -0.02 5.16 16 42 H 0.29 13.41 8.30 -92.70 -0.77 12.64 16 43 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.45 4.64 8.39 -92.71 -0.78 3.86 16 45 H 0.44 3.75 8.96 -92.71 -0.83 2.92 16 Total: -1.00 -74.99 380.61 -0.26 -75.25 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -1.35 Total: 31.75 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.57 Total: -17.38 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -6.35 Total: -84.66 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.16 Total: -44.10 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.14 kcal Total: -74.99 -0.26 -75.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569187100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.820 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds