Wall clock time and date at job start Wed Apr 1 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.88865 * 2 1 4 4 N 1.46505 * 109.46880 * 303.87803 * 3 2 1 5 5 C 1.36929 * 120.00353 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99845 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00195 * 180.02562 * 5 4 3 8 8 N 1.31616 * 120.00296 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99934 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46672 * 89.99907 * 9 7 5 11 11 H 1.48496 * 109.47204 * 209.99786 * 9 7 5 12 12 H 1.48499 * 109.47408 * 330.00410 * 9 7 5 13 13 C 1.55164 * 111.00537 * 123.87650 * 2 1 3 14 14 C 1.54321 * 102.93965 * 82.60808 * 13 2 1 15 15 N 1.47016 * 107.27313 * 22.19664 * 14 13 2 16 16 C 1.34774 * 125.65010 * 181.01811 * 15 14 13 17 17 O 1.21587 * 120.00117 * 184.85551 * 16 15 14 18 18 C 1.47586 * 120.00000 * 4.85837 * 16 15 14 19 19 C 1.39556 * 120.21851 * 313.28982 * 18 16 15 20 20 C 1.38183 * 120.28928 * 179.97438 * 19 18 16 21 21 C 1.38024 * 120.59819 * 359.97438 * 20 19 18 22 22 C 1.39476 * 120.06549 * 0.04812 * 21 20 19 23 23 N 1.36221 * 133.66051 * 179.97438 * 22 21 20 24 24 C 1.30601 * 108.67796 * 180.02562 * 23 22 21 25 25 O 1.35190 * 124.94102 * 180.02562 * 24 23 22 26 26 O 1.34411 * 110.11163 * 359.97438 * 24 23 22 27 27 C 1.35005 * 108.22236 * 0.02562 * 26 24 23 28 28 C 1.47423 * 108.70486 * 1.28383 * 15 14 13 29 29 H 1.09000 * 109.47221 * 296.12251 * 1 2 3 30 30 H 1.08998 * 109.46916 * 56.12528 * 1 2 3 31 31 H 1.08998 * 109.46940 * 176.12511 * 1 2 3 32 32 H 1.08996 * 109.47233 * 63.87478 * 3 2 1 33 33 H 1.09002 * 109.47066 * 183.88415 * 3 2 1 34 34 H 0.97007 * 119.99583 * 0.02562 * 4 3 2 35 35 H 0.96993 * 120.00303 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71859 * 324.24856 * 13 2 1 37 37 H 1.09000 * 110.87571 * 201.04454 * 13 2 1 38 38 H 1.08996 * 109.88454 * 262.77483 * 14 13 2 39 39 H 1.09000 * 109.88065 * 141.61192 * 14 13 2 40 40 H 1.08001 * 119.85559 * 0.26040 * 19 18 16 41 41 H 1.08002 * 119.69882 * 180.02562 * 20 19 18 42 42 H 1.08003 * 119.96628 * 180.02562 * 21 20 19 43 43 H 0.96699 * 114.00183 * 89.96752 * 25 24 23 44 44 H 1.08998 * 110.36793 * 94.48112 * 28 15 14 45 45 H 1.08995 * 110.37237 * 216.80515 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5303 2.1602 -1.1468 5 6 1.8803 3.4675 -1.3549 6 1 2.5580 3.9601 -0.6734 7 6 1.3632 4.1600 -2.4412 8 7 0.5369 3.5599 -3.2714 9 14 1.8402 5.9437 -2.7247 10 1 3.0523 6.0018 -3.5808 11 1 0.7236 6.6536 -3.3987 12 1 2.1242 6.5936 -1.4200 13 6 2.0862 -0.8074 1.2026 14 6 2.0294 -2.2642 0.6967 15 7 2.0153 -2.2158 -0.7726 16 6 1.9494 -3.2830 -1.5931 17 8 2.0330 -3.1307 -2.7965 18 6 1.7756 -4.6364 -1.0310 19 6 2.5550 -5.0539 0.0488 20 6 2.3931 -6.3206 0.5767 21 6 1.4607 -7.1890 0.0459 22 6 0.6715 -6.7926 -1.0336 23 7 -0.3067 -7.4040 -1.7580 24 6 -0.7265 -6.5759 -2.6765 25 8 -1.6953 -6.8474 -3.5794 26 8 -0.0558 -5.4141 -2.5927 27 6 0.8285 -5.5094 -1.5771 28 6 2.0916 -0.8069 -1.2000 29 1 -0.3634 0.4525 0.9227 30 1 -0.3633 0.5728 -0.8532 31 1 -0.3633 -1.0253 -0.0694 32 1 1.7823 1.9302 0.9226 33 1 3.1630 1.4033 -0.0696 34 1 0.9212 1.7178 -1.7587 35 1 0.1753 4.0439 -4.0302 36 1 1.4520 -0.6788 2.0798 37 1 3.1128 -0.5160 1.4246 38 1 1.1229 -2.7479 1.0604 39 1 2.9074 -2.8107 1.0411 40 1 3.2846 -4.3824 0.4767 41 1 3.0011 -6.6337 1.4126 42 1 1.3425 -8.1767 0.4668 43 1 -2.5859 -6.6151 -3.2827 44 1 3.1260 -0.5261 -1.3981 45 1 1.4776 -0.6453 -2.0859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569695085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:48 Heat of formation + Delta-G solvation = -4.433371 kcal Electronic energy + Delta-G solvation = -30128.140853 eV Core-core repulsion = 25920.580212 eV Total energy + Delta-G solvation = -4207.560641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.66539 -40.43727 -38.82080 -38.04919 -37.65270 -35.03823 -34.80107 -32.79027 -31.33831 -30.46240 -29.84050 -29.13439 -26.84035 -25.78126 -24.44634 -23.65080 -23.41363 -22.61110 -21.97954 -19.95998 -19.58718 -18.93721 -18.65058 -17.74379 -17.37884 -16.94287 -16.54937 -15.99108 -15.70534 -15.42174 -15.10760 -14.63817 -14.51009 -14.18351 -13.94169 -13.62070 -13.45854 -13.15930 -12.98276 -12.89780 -12.79123 -12.54176 -12.27656 -12.09169 -11.92211 -11.79181 -11.73253 -11.60295 -11.11605 -11.01921 -10.84334 -10.56851 -10.46019 -10.35707 -10.03787 -9.91627 -9.63680 -9.26719 -8.90409 -8.88072 -8.60697 -6.92795 -5.76076 -3.05233 0.00347 0.68883 1.48005 1.77444 2.58012 2.84026 3.00359 3.22684 3.44080 3.48889 3.50828 3.95688 4.24236 4.36191 4.48060 4.56999 4.58333 4.67447 4.72743 4.85217 4.93042 5.17327 5.25910 5.29162 5.42878 5.45041 5.52293 5.58275 5.66025 5.72194 5.78592 5.82267 5.96173 6.02347 6.05171 6.08496 6.14319 6.20837 6.33246 6.44989 6.62161 6.62813 6.71642 6.80190 7.07309 7.44538 7.69789 8.04638 8.42276 9.53661 10.10455 10.44656 11.46616 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.002540 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.262412 B =11020.434750 C =12115.854503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 C 0.170 3.830 4 N -0.731 5.731 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.122 4.122 14 C 0.098 3.902 15 N -0.608 5.608 16 C 0.568 3.432 17 O -0.520 6.520 18 C -0.088 4.088 19 C -0.064 4.064 20 C -0.118 4.118 21 C -0.041 4.041 22 C 0.027 3.973 23 N -0.465 5.465 24 C 0.424 3.576 25 O -0.406 6.406 26 O -0.209 6.209 27 C 0.063 3.937 28 C 0.121 3.879 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.422 0.578 44 H 0.075 0.925 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 -23.455 12.598 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 C 0.042 3.958 4 N -0.376 5.376 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.160 4.160 14 C -0.025 4.025 15 N -0.342 5.342 16 C 0.355 3.645 17 O -0.396 6.396 18 C -0.092 4.092 19 C -0.082 4.082 20 C -0.138 4.138 21 C -0.060 4.060 22 C -0.085 4.085 23 N -0.209 5.209 24 C 0.174 3.826 25 O -0.214 6.214 26 O -0.102 6.102 27 C 0.011 3.989 28 C 0.000 4.000 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.283 0.717 44 H 0.093 0.907 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.241 -24.023 11.555 26.658 hybrid contribution -0.354 1.668 -0.562 1.795 sum -0.113 -22.354 10.993 24.911 Atomic orbital electron populations 1.21677 0.93295 1.00684 1.03107 1.22008 0.96522 0.96055 0.93293 1.20576 0.95654 0.87602 0.91983 1.42409 1.55937 1.10870 1.28395 1.19196 1.22468 0.87873 1.07678 0.91191 1.24740 0.99914 0.98341 0.97884 1.69651 1.35370 1.36321 1.16665 0.86199 0.77445 0.84883 0.77689 1.21733 1.21813 1.20801 1.22732 1.02481 0.92554 0.98278 1.22238 1.01363 0.98803 0.80103 1.48440 1.72003 1.06810 1.06901 1.17654 0.77752 0.83176 0.85925 1.90878 1.49295 1.85381 1.14046 1.18743 0.97755 0.94206 0.98509 1.21404 0.97283 0.96907 0.92616 1.21017 0.98666 0.93075 1.01011 1.20465 0.92701 1.00502 0.92379 1.19582 0.98376 0.91002 0.99569 1.71116 1.13854 1.29836 1.06069 1.22526 0.91383 0.79770 0.88927 1.84915 1.17871 1.81590 1.37016 1.84586 1.42976 1.37355 1.45283 1.19681 0.93932 0.96679 0.88621 1.22456 1.01891 0.77338 0.98320 0.92441 0.90947 0.93753 0.95736 0.96026 0.78039 0.93468 0.89779 0.90105 0.91324 0.91253 0.83177 0.83499 0.83868 0.71662 0.90692 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.42 37.16 0.31 -1.69 16 2 C -0.08 -1.16 0.63 -152.24 -0.10 -1.26 16 3 C 0.17 3.19 5.25 -4.04 -0.02 3.17 16 4 N -0.73 -17.92 5.18 -59.91 -0.31 -18.23 16 5 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 9 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.12 -1.28 5.91 -24.89 -0.15 -1.43 16 14 C 0.10 0.95 5.30 -3.07 -0.02 0.93 16 15 N -0.61 -8.49 3.31 -171.60 -0.57 -9.06 16 16 C 0.57 9.00 7.40 -12.45 -0.09 8.91 16 17 O -0.52 -10.68 17.30 5.29 0.09 -10.59 16 18 C -0.09 -1.11 5.43 -104.97 -0.57 -1.68 16 19 C -0.06 -0.52 8.53 -39.11 -0.33 -0.86 16 20 C -0.12 -0.73 10.00 -39.68 -0.40 -1.13 16 21 C -0.04 -0.33 10.09 -39.20 -0.40 -0.72 16 22 C 0.03 0.31 7.23 -84.71 -0.61 -0.30 16 23 N -0.47 -5.68 11.38 -12.80 -0.15 -5.82 16 24 C 0.42 5.03 9.54 52.24 0.50 5.53 16 25 O -0.41 -3.42 13.62 -40.55 -0.55 -3.97 16 26 O -0.21 -3.06 10.77 -19.83 -0.21 -3.28 16 27 C 0.06 0.85 7.08 -38.21 -0.27 0.58 16 28 C 0.12 2.00 5.61 -2.41 -0.01 1.99 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.35 6.65 -51.93 -0.35 1.00 16 31 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.38 10.02 6.23 -40.82 -0.25 9.77 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 37 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.48 5.94 -51.93 -0.31 0.18 16 40 H 0.15 0.90 5.83 -52.49 -0.31 0.60 16 41 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 43 H 0.42 0.91 9.06 45.56 0.41 1.32 16 44 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 45 H 0.08 1.66 8.00 -51.93 -0.42 1.25 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -37.48 375.86 -7.69 -45.17 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.96 Total: 5.46 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.40 Total: 4.80 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.30 Total: -60.64 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.67 Total: -17.84 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.48 -7.69 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569695085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.734 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds