Wall clock time and date at job start Wed Apr 1 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.88865 * 2 1 4 4 N 1.46505 * 109.46880 * 303.87803 * 3 2 1 5 5 C 1.36929 * 120.00353 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99845 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00195 * 180.02562 * 5 4 3 8 8 N 1.31616 * 120.00296 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99934 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46672 * 89.99907 * 9 7 5 11 11 H 1.48496 * 109.47204 * 209.99786 * 9 7 5 12 12 H 1.48499 * 109.47408 * 330.00410 * 9 7 5 13 13 C 1.55164 * 111.00537 * 123.87650 * 2 1 3 14 14 C 1.54321 * 102.93965 * 82.60808 * 13 2 1 15 15 N 1.47016 * 107.27313 * 22.19664 * 14 13 2 16 16 C 1.34774 * 125.65010 * 181.01811 * 15 14 13 17 17 O 1.21587 * 120.00117 * 184.85551 * 16 15 14 18 18 C 1.47586 * 120.00000 * 4.85837 * 16 15 14 19 19 C 1.39556 * 120.21851 * 313.28982 * 18 16 15 20 20 C 1.38183 * 120.28928 * 179.97438 * 19 18 16 21 21 C 1.38024 * 120.59819 * 359.97438 * 20 19 18 22 22 C 1.39476 * 120.06549 * 0.04812 * 21 20 19 23 23 N 1.36221 * 133.66051 * 179.97438 * 22 21 20 24 24 C 1.30601 * 108.67796 * 180.02562 * 23 22 21 25 25 O 1.35190 * 124.94102 * 180.02562 * 24 23 22 26 26 O 1.34411 * 110.11163 * 359.97438 * 24 23 22 27 27 C 1.35005 * 108.22236 * 0.02562 * 26 24 23 28 28 C 1.47423 * 108.70486 * 1.28383 * 15 14 13 29 29 H 1.09000 * 109.47221 * 296.12251 * 1 2 3 30 30 H 1.08998 * 109.46916 * 56.12528 * 1 2 3 31 31 H 1.08998 * 109.46940 * 176.12511 * 1 2 3 32 32 H 1.08996 * 109.47233 * 63.87478 * 3 2 1 33 33 H 1.09002 * 109.47066 * 183.88415 * 3 2 1 34 34 H 0.97007 * 119.99583 * 0.02562 * 4 3 2 35 35 H 0.96993 * 120.00303 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71859 * 324.24856 * 13 2 1 37 37 H 1.09000 * 110.87571 * 201.04454 * 13 2 1 38 38 H 1.08996 * 109.88454 * 262.77483 * 14 13 2 39 39 H 1.09000 * 109.88065 * 141.61192 * 14 13 2 40 40 H 1.08001 * 119.85559 * 0.26040 * 19 18 16 41 41 H 1.08002 * 119.69882 * 180.02562 * 20 19 18 42 42 H 1.08003 * 119.96628 * 180.02562 * 21 20 19 43 43 H 0.96699 * 114.00183 * 89.96752 * 25 24 23 44 44 H 1.08998 * 110.36793 * 94.48112 * 28 15 14 45 45 H 1.08995 * 110.37237 * 216.80515 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5303 2.1602 -1.1468 5 6 1.8803 3.4675 -1.3549 6 1 2.5580 3.9601 -0.6734 7 6 1.3632 4.1600 -2.4412 8 7 0.5369 3.5599 -3.2714 9 14 1.8402 5.9437 -2.7247 10 1 3.0523 6.0018 -3.5808 11 1 0.7236 6.6536 -3.3987 12 1 2.1242 6.5936 -1.4200 13 6 2.0862 -0.8074 1.2026 14 6 2.0294 -2.2642 0.6967 15 7 2.0153 -2.2158 -0.7726 16 6 1.9494 -3.2830 -1.5931 17 8 2.0330 -3.1307 -2.7965 18 6 1.7756 -4.6364 -1.0310 19 6 2.5550 -5.0539 0.0488 20 6 2.3931 -6.3206 0.5767 21 6 1.4607 -7.1890 0.0459 22 6 0.6715 -6.7926 -1.0336 23 7 -0.3067 -7.4040 -1.7580 24 6 -0.7265 -6.5759 -2.6765 25 8 -1.6953 -6.8474 -3.5794 26 8 -0.0558 -5.4141 -2.5927 27 6 0.8285 -5.5094 -1.5771 28 6 2.0916 -0.8069 -1.2000 29 1 -0.3634 0.4525 0.9227 30 1 -0.3633 0.5728 -0.8532 31 1 -0.3633 -1.0253 -0.0694 32 1 1.7823 1.9302 0.9226 33 1 3.1630 1.4033 -0.0696 34 1 0.9212 1.7178 -1.7587 35 1 0.1753 4.0439 -4.0302 36 1 1.4520 -0.6788 2.0798 37 1 3.1128 -0.5160 1.4246 38 1 1.1229 -2.7479 1.0604 39 1 2.9074 -2.8107 1.0411 40 1 3.2846 -4.3824 0.4767 41 1 3.0011 -6.6337 1.4126 42 1 1.3425 -8.1767 0.4668 43 1 -2.5859 -6.6151 -3.2827 44 1 3.1260 -0.5261 -1.3981 45 1 1.4776 -0.6453 -2.0859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569695085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:47 Heat of formation + Delta-G solvation = -36.734463 kcal Electronic energy + Delta-G solvation = -30129.541533 eV Core-core repulsion = 25920.580212 eV Total energy + Delta-G solvation = -4208.961322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.50126 -41.55312 -39.70048 -39.06463 -38.50703 -36.54255 -35.80632 -34.39188 -32.49019 -31.84202 -30.65039 -30.26274 -28.09852 -27.37516 -25.64268 -24.75818 -24.25990 -23.77854 -23.13769 -20.83710 -20.48039 -20.21819 -19.50171 -19.14857 -18.57115 -18.04484 -17.60960 -17.11690 -16.60929 -16.46823 -16.39268 -15.90816 -15.54089 -15.45357 -15.24061 -15.00782 -14.74205 -14.45436 -14.06306 -13.91509 -13.63926 -13.60450 -13.42864 -13.19792 -13.03566 -12.93222 -12.81501 -12.72695 -12.70355 -12.50977 -12.15872 -12.05191 -12.00833 -11.69907 -11.51806 -11.40204 -11.14277 -10.93515 -10.01522 -9.79116 -9.59872 -8.98227 -7.94409 -5.22882 -0.72549 -0.07000 0.75007 0.94989 1.46022 1.48059 1.48806 1.56497 1.80526 2.27432 2.47872 2.55967 3.10540 3.36543 3.41789 3.56077 3.58646 3.73902 3.83531 3.90552 4.03518 4.14078 4.17155 4.28588 4.35735 4.37906 4.53633 4.62153 4.67364 4.76715 4.78768 4.83343 4.90548 4.96210 5.06305 5.08869 5.12208 5.13774 5.18820 5.25764 5.31892 5.46006 5.51103 5.52675 6.11012 6.25794 6.27273 6.35191 6.88818 7.33627 8.11466 8.32182 9.29460 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.002540 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.262412 B =11020.434750 C =12115.854503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C 0.167 3.833 4 N -0.746 5.746 5 C -0.239 4.239 6 H 0.081 0.919 7 C -0.081 4.081 8 N -0.974 5.974 9 Si 0.974 3.026 10 H -0.290 1.290 11 H -0.299 1.299 12 H -0.264 1.264 13 C -0.109 4.109 14 C 0.092 3.908 15 N -0.603 5.603 16 C 0.562 3.438 17 O -0.589 6.589 18 C -0.117 4.117 19 C -0.042 4.042 20 C -0.095 4.095 21 C -0.032 4.032 22 C 0.010 3.990 23 N -0.475 5.475 24 C 0.415 3.585 25 O -0.408 6.408 26 O -0.245 6.245 27 C 0.027 3.973 28 C 0.124 3.876 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.372 0.628 35 H 0.249 0.751 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.180 0.820 41 H 0.201 0.799 42 H 0.174 0.826 43 H 0.445 0.555 44 H 0.063 0.937 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -25.261 17.414 30.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.073 4.073 3 C 0.041 3.959 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.099 0.901 7 C -0.273 4.273 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.218 1.218 11 H -0.226 1.226 12 H -0.189 1.189 13 C -0.147 4.147 14 C -0.029 4.029 15 N -0.334 5.334 16 C 0.352 3.648 17 O -0.470 6.470 18 C -0.121 4.121 19 C -0.061 4.061 20 C -0.113 4.113 21 C -0.051 4.051 22 C -0.102 4.102 23 N -0.219 5.219 24 C 0.166 3.834 25 O -0.220 6.220 26 O -0.139 6.139 27 C -0.023 4.023 28 C 0.002 3.998 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.197 0.803 41 H 0.218 0.782 42 H 0.192 0.808 43 H 0.311 0.689 44 H 0.082 0.918 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.077 -25.839 16.482 30.718 hybrid contribution -0.889 2.145 -1.973 3.047 sum 1.188 -23.694 14.508 27.809 Atomic orbital electron populations 1.21581 0.93747 1.00705 1.01953 1.21883 0.96019 0.94219 0.95158 1.20786 0.95691 0.89342 0.90120 1.42682 1.55876 1.10509 1.29874 1.19672 1.21216 0.89089 1.07115 0.90137 1.25598 1.00765 1.02633 0.98275 1.69838 1.37388 1.37857 1.17405 0.85132 0.76530 0.80062 0.78000 1.21768 1.22550 1.18883 1.22774 1.03734 0.91510 0.96648 1.22639 1.04337 0.99079 0.76840 1.48485 1.70884 1.05113 1.08947 1.18326 0.76427 0.84805 0.85273 1.90827 1.52457 1.86584 1.17096 1.18701 1.00108 0.92300 1.01012 1.21846 0.95692 0.98226 0.90286 1.21591 0.97472 0.91204 1.01060 1.21040 0.91436 1.02084 0.90504 1.20061 0.99091 0.90229 1.00774 1.71092 1.14454 1.29885 1.06439 1.22785 0.91952 0.79335 0.89372 1.84873 1.18923 1.81395 1.36817 1.84542 1.43996 1.38842 1.46504 1.20117 0.94835 0.98169 0.89223 1.22186 1.00210 0.79872 0.97573 0.90651 0.95362 0.92652 0.94479 0.95517 0.79547 0.94250 0.86929 0.88378 0.89469 0.87010 0.80279 0.78214 0.80836 0.68925 0.91833 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 8.42 71.98 0.61 -3.18 16 2 C -0.07 -2.10 0.63 -50.71 -0.03 -2.13 16 3 C 0.17 6.18 5.25 86.38 0.45 6.64 16 4 N -0.75 -37.73 5.18 -343.45 -1.78 -39.51 16 5 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 6 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 8 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 9 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 13 C -0.11 -1.83 5.91 31.78 0.19 -1.64 16 14 C 0.09 1.41 5.30 86.73 0.46 1.87 16 15 N -0.60 -16.67 3.31 -815.08 -2.70 -19.37 16 16 C 0.56 18.53 7.40 86.71 0.64 19.17 16 17 O -0.59 -26.50 17.30 -3.99 -0.07 -26.56 16 18 C -0.12 -2.86 5.43 -20.09 -0.11 -2.97 16 19 C -0.04 -0.51 8.53 22.57 0.19 -0.32 16 20 C -0.09 -0.61 10.00 22.21 0.22 -0.39 16 21 C -0.03 -0.37 10.09 22.52 0.23 -0.15 16 22 C 0.01 0.23 7.23 39.25 0.28 0.51 16 23 N -0.47 -11.60 11.38 -422.77 -4.81 -16.41 16 24 C 0.42 10.46 9.54 130.43 1.24 11.71 16 25 O -0.41 -7.34 13.62 -62.44 -0.85 -8.19 16 26 O -0.24 -7.79 10.77 11.69 0.13 -7.67 16 27 C 0.03 0.76 7.08 23.16 0.16 0.92 16 28 C 0.12 4.31 5.61 86.93 0.49 4.80 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.03 1.11 6.65 -2.39 -0.02 1.09 16 31 H 0.05 1.56 7.91 -2.39 -0.02 1.54 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.03 0.98 8.07 -2.39 -0.02 0.96 16 34 H 0.37 20.64 6.23 -92.70 -0.58 20.06 16 35 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.11 1.36 8.04 -2.39 -0.02 1.34 16 37 H 0.10 1.39 8.04 -2.39 -0.02 1.37 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 0.84 5.94 -2.39 -0.01 0.83 16 40 H 0.18 1.03 5.83 -2.91 -0.02 1.01 16 41 H 0.20 -0.68 8.06 -2.91 -0.02 -0.71 16 42 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.45 2.27 9.06 -74.06 -0.67 1.60 16 44 H 0.06 2.30 7.99 -2.39 -0.02 2.28 16 45 H 0.03 1.52 8.00 -2.39 -0.02 1.50 16 Total: -1.00 -91.64 375.86 -1.62 -93.27 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -0.19 Total: 18.86 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 6.34 Total: 18.07 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -9.00 Total: -136.78 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.79 Total: -42.42 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -91.64 -1.62 -93.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569695085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.531 kcal (2) G-P(sol) polarization free energy of solvation -91.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds