Wall clock time and date at job start Wed Apr 1 2020 04:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 108.58333 * 2 1 4 4 C 1.50701 * 109.47284 * 298.82327 * 3 2 1 5 5 O 1.21281 * 119.99407 * 354.49970 * 4 3 2 6 6 N 1.34771 * 119.99981 * 174.50164 * 4 3 2 7 7 C 1.46499 * 119.99807 * 179.97438 * 6 4 3 8 8 H 1.08996 * 112.84916 * 25.33194 * 7 6 4 9 9 C 1.53778 * 113.61483 * 156.53205 * 7 6 4 10 10 C 1.53771 * 87.08402 * 89.19937 * 9 7 6 11 11 H 1.09003 * 113.61517 * 270.80117 * 10 9 7 12 12 C 1.53001 * 113.61801 * 139.98179 * 10 9 7 13 13 N 1.46496 * 109.47506 * 174.99537 * 12 10 9 14 14 C 1.36933 * 120.00317 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99619 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00365 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99664 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47193 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47227 * 120.00215 * 18 16 14 21 21 H 1.48503 * 109.47149 * 239.99849 * 18 16 14 22 22 C 1.53778 * 87.08312 * 25.43121 * 10 9 7 23 23 C 1.53207 * 108.50718 * 117.92467 * 2 1 3 24 24 C 1.55554 * 106.24233 * 93.46074 * 23 2 1 25 25 S 1.83902 * 99.64136 * 36.98595 * 24 23 2 26 26 O 1.42101 * 111.46418 * 215.90917 * 25 24 23 27 27 O 1.42103 * 111.61475 * 75.90256 * 25 24 23 28 28 N 1.46452 * 108.64375 * 242.00237 * 2 1 3 29 29 H 1.09000 * 109.47439 * 66.34961 * 1 2 3 30 30 H 1.09008 * 109.47386 * 186.34829 * 1 2 3 31 31 H 1.09001 * 109.47145 * 306.34732 * 1 2 3 32 32 H 1.08997 * 109.47125 * 178.81675 * 3 2 1 33 33 H 1.09007 * 109.46594 * 58.81793 * 3 2 1 34 34 H 0.96999 * 120.00098 * 359.97438 * 6 4 3 35 35 H 1.09007 * 113.61511 * 203.75166 * 9 7 6 36 36 H 1.09008 * 113.61504 * 334.64440 * 9 7 6 37 37 H 1.08999 * 109.46925 * 295.00528 * 12 10 9 38 38 H 1.09005 * 109.46797 * 55.00159 * 12 10 9 39 39 H 0.97003 * 119.99962 * 0.02562 * 13 12 10 40 40 H 0.96997 * 119.99959 * 179.97438 * 17 16 14 41 41 H 1.08996 * 113.61866 * 220.01762 * 22 10 9 42 42 H 1.09006 * 113.61160 * 89.11465 * 22 10 9 43 43 H 1.09002 * 110.09944 * 212.65603 * 23 2 1 44 44 H 1.09000 * 110.09965 * 334.26378 * 23 2 1 45 45 H 1.08999 * 111.37107 * 279.38609 * 24 23 2 46 46 H 1.08998 * 111.41197 * 154.61024 * 24 23 2 47 47 H 0.96996 * 126.08614 * 60.82439 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0176 1.4502 0.0000 4 6 1.5284 2.1447 -1.2448 5 8 0.9418 1.5152 -2.0995 6 7 1.7428 3.4652 -1.4082 7 6 1.2678 4.1401 -2.6185 8 1 0.4198 3.6342 -3.0801 9 6 1.0591 5.6530 -2.4386 10 6 2.5286 5.8259 -2.8572 11 1 3.2281 5.7863 -2.0221 12 6 2.7672 7.0262 -3.7755 13 7 4.2038 7.1761 -4.0201 14 6 4.6602 8.1897 -4.8198 15 1 3.9610 8.8789 -5.2698 16 6 6.0214 8.3314 -5.0519 17 7 6.8734 7.4912 -4.5038 18 14 6.6439 9.7145 -6.1422 19 1 5.4929 10.5141 -6.6331 20 1 7.5569 10.5876 -5.3615 21 1 7.3769 9.1409 -7.2994 22 6 2.3892 4.4924 -3.6101 23 6 2.0163 -0.6804 1.2837 24 6 2.2399 -2.1774 0.9248 25 16 2.8985 -1.9899 -0.7820 26 8 2.4545 -3.0409 -1.6290 27 8 4.2500 -1.5508 -0.7763 28 7 1.9982 -0.6514 -1.2253 29 1 -0.3634 0.4122 -0.9413 30 1 -0.3634 -1.0214 0.1136 31 1 -0.3633 0.6091 0.8277 32 1 3.1072 1.4672 0.0212 33 1 1.6289 1.9641 0.8793 34 1 2.2117 3.9686 -0.7244 35 1 0.3501 6.0832 -3.1459 36 1 0.8612 5.9470 -1.4077 37 1 2.2520 6.8670 -4.7227 38 1 2.3835 7.9291 -3.3004 39 1 4.8318 6.5569 -3.6161 40 1 7.8246 7.5900 -4.6663 41 1 3.2651 3.8493 -3.5251 42 1 2.0438 4.6052 -4.6378 43 1 2.9525 -0.2306 1.6145 44 1 1.2608 -0.5911 2.0643 45 1 1.3013 -2.7314 0.9296 46 1 2.9736 -2.6395 1.5852 47 1 1.8187 -0.3586 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571187380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:41 Heat of formation + Delta-G solvation = -67.511406 kcal Electronic energy + Delta-G solvation = -28546.148905 eV Core-core repulsion = 24471.296946 eV Total energy + Delta-G solvation = -4074.851959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.71632 -39.23758 -37.67516 -37.22568 -36.11182 -34.56469 -33.26929 -32.16809 -31.16152 -30.64565 -28.34859 -26.69167 -25.53393 -24.87328 -23.37492 -21.66867 -21.27958 -20.53699 -19.82204 -19.10983 -17.80895 -17.23509 -16.99501 -16.85376 -16.21042 -15.94857 -15.73153 -15.16009 -15.03974 -14.68414 -14.34936 -14.16356 -13.91390 -13.75779 -13.61392 -13.36746 -13.01884 -12.94117 -12.78792 -12.43692 -12.36069 -12.27831 -12.23240 -12.12842 -11.95298 -11.72854 -11.52354 -11.30820 -11.03470 -10.91304 -10.84339 -10.49555 -10.34599 -10.08914 -9.90374 -9.82812 -9.73009 -9.61253 -9.05100 -8.84699 -6.89837 -5.75406 -3.03700 -0.04920 2.31506 2.44622 2.93229 3.30718 3.43863 3.49320 3.50253 3.51751 3.80232 4.02850 4.16213 4.42638 4.55368 4.58129 4.67109 4.71698 4.79223 4.90027 4.97121 5.02770 5.08307 5.11871 5.12079 5.19508 5.29263 5.49236 5.58800 5.67552 5.72666 5.82374 5.90875 5.97853 6.05758 6.10853 6.22879 6.29622 6.41020 6.59776 6.77292 6.92096 7.07036 7.36520 7.71278 8.08240 8.43768 9.54768 10.13835 10.48084 11.47622 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002101 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.386382 B =13322.556904 C =14315.928573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.159 3.841 3 C -0.152 4.152 4 C 0.522 3.478 5 O -0.538 6.538 6 N -0.708 5.708 7 C 0.115 3.885 8 H 0.099 0.901 9 C -0.138 4.138 10 C -0.113 4.113 11 H 0.087 0.913 12 C 0.162 3.838 13 N -0.732 5.732 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.139 4.139 23 C -0.118 4.118 24 C -0.593 4.593 25 S 2.563 3.437 26 O -0.962 6.962 27 O -0.952 6.952 28 N -1.077 6.077 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.402 0.598 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 -18.421 17.890 30.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.068 3.932 3 C -0.194 4.194 4 C 0.309 3.691 5 O -0.415 6.415 6 N -0.358 5.358 7 C 0.010 3.990 8 H 0.117 0.883 9 C -0.176 4.176 10 C -0.132 4.132 11 H 0.106 0.894 12 C 0.035 3.965 13 N -0.376 5.376 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.212 4.212 17 N -0.582 5.582 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.178 4.178 23 C -0.157 4.157 24 C -0.724 4.724 25 S 2.657 3.343 26 O -0.951 6.951 27 O -0.941 6.941 28 N -0.848 5.848 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.237 0.763 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.132 0.868 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -15.323 -19.271 16.639 29.716 hybrid contribution 0.484 1.289 0.043 1.378 sum -14.839 -17.982 16.683 28.668 Atomic orbital electron populations 1.22460 0.93115 1.02492 1.04419 1.20237 0.96609 0.91990 0.84358 1.22248 1.03956 0.95648 0.97498 1.20411 0.78642 0.81886 0.88140 1.90559 1.41925 1.64600 1.44461 1.45721 1.58931 1.08968 1.22149 1.21945 0.98045 0.92943 0.86049 0.88322 1.23304 0.98209 0.94150 1.01946 1.22756 0.95396 0.95976 0.99064 0.89441 1.20636 0.87435 0.93580 0.94889 1.42355 1.00698 1.35561 1.58989 1.19283 0.90982 1.05415 1.21304 0.91201 1.24748 0.95988 0.99299 1.01116 1.69667 1.01640 1.38530 1.48381 0.86119 0.78568 0.81527 0.79995 1.20585 1.21889 1.21874 1.23409 0.98487 0.97207 0.98656 1.22520 1.05230 0.90701 0.97285 1.30773 1.13822 1.03626 1.24151 1.06592 0.75105 0.74665 0.77947 1.93611 1.82083 1.56196 1.63252 1.93674 1.33804 1.80645 1.86003 1.55197 1.71340 1.45168 1.13128 0.89255 0.92252 0.92000 0.87462 0.87787 0.76341 0.88761 0.91317 0.96255 0.96451 0.78336 0.93582 0.91296 0.89166 0.88208 0.86819 0.84067 0.84163 0.70981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 8.04 37.16 0.30 -0.73 16 2 C 0.16 1.01 0.83 -131.74 -0.11 0.90 16 3 C -0.15 -0.95 4.68 -27.88 -0.13 -1.08 16 4 C 0.52 5.14 7.30 -10.99 -0.08 5.06 16 5 O -0.54 -6.74 11.46 5.56 0.06 -6.68 16 6 N -0.71 -6.78 5.27 -53.02 -0.28 -7.06 16 7 C 0.12 1.33 4.30 -67.12 -0.29 1.04 16 8 H 0.10 1.20 7.50 -51.93 -0.39 0.81 16 9 C -0.14 -1.54 7.38 -25.93 -0.19 -1.73 16 10 C -0.11 -1.69 3.64 -89.81 -0.33 -2.01 16 11 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 12 C 0.16 3.19 6.10 -4.04 -0.02 3.16 16 13 N -0.73 -18.59 5.60 -59.91 -0.34 -18.92 16 14 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 18 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 C -0.14 -2.01 7.43 -25.92 -0.19 -2.20 16 23 C -0.12 -0.41 5.56 -25.27 -0.14 -0.55 16 24 C -0.59 -2.30 7.66 38.52 0.29 -2.00 16 25 S 2.56 22.98 6.47 -107.50 -0.70 22.28 16 26 O -0.96 -12.28 18.14 -57.40 -1.04 -13.32 16 27 O -0.95 -12.01 18.14 -57.40 -1.04 -13.05 16 28 N -1.08 -9.70 5.67 0.60 0.00 -9.69 16 29 H 0.09 0.80 5.91 -51.93 -0.31 0.49 16 30 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.06 0.27 8.13 -51.93 -0.42 -0.15 16 32 H 0.11 0.66 8.12 -51.93 -0.42 0.23 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.40 3.06 8.71 -40.82 -0.36 2.71 16 35 H 0.09 1.02 8.10 -51.92 -0.42 0.60 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 43 H 0.10 0.25 7.81 -51.93 -0.41 -0.15 16 44 H 0.11 0.14 7.77 -51.93 -0.40 -0.26 16 45 H 0.14 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.14 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.44 4.74 6.86 -40.36 -0.28 4.47 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -38.60 386.68 -10.40 -49.00 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.46 Total: 9.43 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.14 Total: -7.61 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: 0.11 Total: -63.48 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -2.02 Total: -33.04 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 22.98 SS G_CDS: -0.70 Total: 22.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.60 -10.40 -49.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571187380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.512 kcal (2) G-P(sol) polarization free energy of solvation -38.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds