Wall clock time and date at job start Wed Apr 1 2020 04:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 108.58333 * 2 1 4 4 C 1.50701 * 109.47284 * 298.82327 * 3 2 1 5 5 O 1.21281 * 119.99407 * 354.49970 * 4 3 2 6 6 N 1.34771 * 119.99981 * 174.50164 * 4 3 2 7 7 C 1.46499 * 119.99807 * 179.97438 * 6 4 3 8 8 H 1.08996 * 112.84916 * 25.33194 * 7 6 4 9 9 C 1.53778 * 113.61483 * 156.53205 * 7 6 4 10 10 C 1.53771 * 87.08402 * 89.19937 * 9 7 6 11 11 H 1.09003 * 113.61517 * 270.80117 * 10 9 7 12 12 C 1.53001 * 113.61801 * 139.98179 * 10 9 7 13 13 N 1.46496 * 109.47506 * 174.99537 * 12 10 9 14 14 C 1.36933 * 120.00317 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99619 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00365 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99664 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47193 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47227 * 120.00215 * 18 16 14 21 21 H 1.48503 * 109.47149 * 239.99849 * 18 16 14 22 22 C 1.53778 * 87.08312 * 25.43121 * 10 9 7 23 23 C 1.53207 * 108.50718 * 117.92467 * 2 1 3 24 24 C 1.55554 * 106.24233 * 93.46074 * 23 2 1 25 25 S 1.83902 * 99.64136 * 36.98595 * 24 23 2 26 26 O 1.42101 * 111.46418 * 215.90917 * 25 24 23 27 27 O 1.42103 * 111.61475 * 75.90256 * 25 24 23 28 28 N 1.46452 * 108.64375 * 242.00237 * 2 1 3 29 29 H 1.09000 * 109.47439 * 66.34961 * 1 2 3 30 30 H 1.09008 * 109.47386 * 186.34829 * 1 2 3 31 31 H 1.09001 * 109.47145 * 306.34732 * 1 2 3 32 32 H 1.08997 * 109.47125 * 178.81675 * 3 2 1 33 33 H 1.09007 * 109.46594 * 58.81793 * 3 2 1 34 34 H 0.96999 * 120.00098 * 359.97438 * 6 4 3 35 35 H 1.09007 * 113.61511 * 203.75166 * 9 7 6 36 36 H 1.09008 * 113.61504 * 334.64440 * 9 7 6 37 37 H 1.08999 * 109.46925 * 295.00528 * 12 10 9 38 38 H 1.09005 * 109.46797 * 55.00159 * 12 10 9 39 39 H 0.97003 * 119.99962 * 0.02562 * 13 12 10 40 40 H 0.96997 * 119.99959 * 179.97438 * 17 16 14 41 41 H 1.08996 * 113.61866 * 220.01762 * 22 10 9 42 42 H 1.09006 * 113.61160 * 89.11465 * 22 10 9 43 43 H 1.09002 * 110.09944 * 212.65603 * 23 2 1 44 44 H 1.09000 * 110.09965 * 334.26378 * 23 2 1 45 45 H 1.08999 * 111.37107 * 279.38609 * 24 23 2 46 46 H 1.08998 * 111.41197 * 154.61024 * 24 23 2 47 47 H 0.96996 * 126.08614 * 60.82439 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0176 1.4502 0.0000 4 6 1.5284 2.1447 -1.2448 5 8 0.9418 1.5152 -2.0995 6 7 1.7428 3.4652 -1.4082 7 6 1.2678 4.1401 -2.6185 8 1 0.4198 3.6342 -3.0801 9 6 1.0591 5.6530 -2.4386 10 6 2.5286 5.8259 -2.8572 11 1 3.2281 5.7863 -2.0221 12 6 2.7672 7.0262 -3.7755 13 7 4.2038 7.1761 -4.0201 14 6 4.6602 8.1897 -4.8198 15 1 3.9610 8.8789 -5.2698 16 6 6.0214 8.3314 -5.0519 17 7 6.8734 7.4912 -4.5038 18 14 6.6439 9.7145 -6.1422 19 1 5.4929 10.5141 -6.6331 20 1 7.5569 10.5876 -5.3615 21 1 7.3769 9.1409 -7.2994 22 6 2.3892 4.4924 -3.6101 23 6 2.0163 -0.6804 1.2837 24 6 2.2399 -2.1774 0.9248 25 16 2.8985 -1.9899 -0.7820 26 8 2.4545 -3.0409 -1.6290 27 8 4.2500 -1.5508 -0.7763 28 7 1.9982 -0.6514 -1.2253 29 1 -0.3634 0.4122 -0.9413 30 1 -0.3634 -1.0214 0.1136 31 1 -0.3633 0.6091 0.8277 32 1 3.1072 1.4672 0.0212 33 1 1.6289 1.9641 0.8793 34 1 2.2117 3.9686 -0.7244 35 1 0.3501 6.0832 -3.1459 36 1 0.8612 5.9470 -1.4077 37 1 2.2520 6.8670 -4.7227 38 1 2.3835 7.9291 -3.3004 39 1 4.8318 6.5569 -3.6161 40 1 7.8246 7.5900 -4.6663 41 1 3.2651 3.8493 -3.5251 42 1 2.0438 4.6052 -4.6378 43 1 2.9525 -0.2306 1.6145 44 1 1.2608 -0.5911 2.0643 45 1 1.3013 -2.7314 0.9296 46 1 2.9736 -2.6395 1.5852 47 1 1.8187 -0.3586 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571187380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:40 Heat of formation + Delta-G solvation = -100.172836 kcal Electronic energy + Delta-G solvation = -28547.565211 eV Core-core repulsion = 24471.296946 eV Total energy + Delta-G solvation = -4076.268265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48521 -40.11814 -38.44185 -37.99783 -36.90404 -36.32390 -34.41399 -32.85279 -32.61094 -31.46185 -29.07205 -28.11984 -26.62190 -25.51255 -24.95665 -23.00536 -22.09355 -21.12898 -20.47835 -20.25796 -19.07128 -18.46741 -17.91096 -17.41085 -17.03968 -16.79242 -16.63756 -16.40600 -15.96986 -15.73607 -15.60298 -15.19536 -15.13929 -14.75080 -14.52398 -14.10770 -14.05037 -13.80067 -13.54311 -13.40663 -13.27162 -13.20496 -13.11552 -13.06353 -12.95681 -12.80573 -12.60362 -12.45393 -12.13600 -12.07495 -11.93951 -11.79635 -11.71521 -11.40610 -11.34101 -11.14312 -10.87469 -10.64786 -10.31387 -9.93968 -8.99334 -7.96594 -5.24949 -0.65140 1.45606 1.46814 1.56849 1.67628 1.74722 2.21762 2.54808 2.73937 3.07616 3.36591 3.38547 3.56938 3.61013 3.61434 3.72002 3.94571 3.95728 3.97530 4.08884 4.29872 4.32711 4.51446 4.59188 4.62392 4.74787 4.77588 4.78094 4.84968 4.89663 4.92862 4.93302 4.95663 4.98907 5.10397 5.16268 5.28284 5.32256 5.37972 5.48428 5.60644 5.74237 6.26428 6.29958 6.63634 7.32103 7.35616 8.10337 8.32267 9.27262 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002101 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.386382 B =13322.556904 C =14315.928573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 C -0.149 4.149 4 C 0.513 3.487 5 O -0.569 6.569 6 N -0.704 5.704 7 C 0.130 3.870 8 H 0.094 0.906 9 C -0.114 4.114 10 C -0.111 4.111 11 H 0.086 0.914 12 C 0.159 3.841 13 N -0.746 5.746 14 C -0.244 4.244 15 H 0.075 0.925 16 C -0.079 4.079 17 N -0.970 5.970 18 Si 0.974 3.026 19 H -0.265 1.265 20 H -0.291 1.291 21 H -0.295 1.295 22 C -0.147 4.147 23 C -0.117 4.117 24 C -0.547 4.547 25 S 2.541 3.459 26 O -1.016 7.016 27 O -1.003 7.003 28 N -1.087 6.087 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.414 0.586 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.017 0.983 38 H 0.023 0.977 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.153 0.847 45 H 0.165 0.835 46 H 0.172 0.828 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.527 -17.976 21.189 32.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 C -0.190 4.190 4 C 0.302 3.698 5 O -0.449 6.449 6 N -0.355 5.355 7 C 0.024 3.976 8 H 0.112 0.888 9 C -0.153 4.153 10 C -0.130 4.130 11 H 0.104 0.896 12 C 0.033 3.967 13 N -0.388 5.388 14 C -0.376 4.376 15 H 0.093 0.907 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.803 3.197 19 H -0.190 1.190 20 H -0.218 1.218 21 H -0.222 1.222 22 C -0.186 4.186 23 C -0.156 4.156 24 C -0.683 4.683 25 S 2.641 3.359 26 O -1.005 7.005 27 O -0.992 6.992 28 N -0.856 5.856 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.164 0.836 34 H 0.250 0.750 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.035 0.965 38 H 0.041 0.959 39 H 0.204 0.796 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.171 0.829 45 H 0.183 0.817 46 H 0.190 0.810 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -17.256 -18.811 19.920 32.379 hybrid contribution 0.978 1.138 -0.952 1.778 sum -16.277 -17.672 18.967 30.611 Atomic orbital electron populations 1.22434 0.92885 1.03319 1.03656 1.20631 0.96905 0.92216 0.84507 1.22363 1.04047 0.95659 0.96963 1.21173 0.77939 0.81676 0.89024 1.90565 1.43288 1.65178 1.45839 1.45703 1.58973 1.09236 1.21631 1.21673 0.96306 0.93552 0.86051 0.88770 1.23195 0.95134 0.93317 1.03625 1.22683 0.98300 0.93810 0.98183 0.89570 1.20844 0.84247 0.95821 0.95828 1.42603 1.02940 1.34724 1.58553 1.19699 0.91330 1.05724 1.20887 0.90693 1.25597 0.96362 1.02034 1.03118 1.69824 1.01583 1.40524 1.50215 0.85062 0.78110 0.78665 0.77861 1.18963 1.21804 1.22225 1.23432 0.98986 0.97055 0.99145 1.22739 1.07296 0.89314 0.96223 1.30567 1.15058 1.05175 1.17474 1.06990 0.74448 0.73881 0.80572 1.93534 1.82389 1.57645 1.66967 1.93604 1.36814 1.81083 1.87735 1.55209 1.71112 1.45634 1.13646 0.92599 0.91390 0.89379 0.87309 0.83628 0.74977 0.87937 0.88659 0.96488 0.95932 0.79604 0.94046 0.93561 0.90225 0.86695 0.82873 0.81678 0.81012 0.72460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.04 71.98 0.58 -1.02 16 2 C 0.15 1.50 0.83 3.68 0.00 1.51 16 3 C -0.15 -1.49 4.68 29.85 0.14 -1.35 16 4 C 0.51 9.60 7.30 87.66 0.64 10.24 16 5 O -0.57 -14.55 11.46 -3.03 -0.03 -14.59 16 6 N -0.70 -12.55 5.27 -440.05 -2.32 -14.87 16 7 C 0.13 2.90 4.30 45.52 0.20 3.09 16 8 H 0.09 2.25 7.50 -2.39 -0.02 2.23 16 9 C -0.11 -2.31 7.38 31.12 0.23 -2.08 16 10 C -0.11 -3.26 3.64 -10.27 -0.04 -3.29 16 11 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 12 C 0.16 6.22 6.10 86.38 0.53 6.74 16 13 N -0.75 -38.46 5.60 -343.45 -1.92 -40.38 16 14 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 15 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 16 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 17 N -0.97 -60.56 13.06 21.65 0.28 -60.27 16 18 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 22 C -0.15 -4.37 7.43 31.12 0.23 -4.13 16 23 C -0.12 -0.24 5.56 31.54 0.18 -0.06 16 24 C -0.55 -2.09 7.66 72.86 0.56 -1.53 16 25 S 2.54 46.50 6.47 -56.49 -0.37 46.13 16 26 O -1.02 -27.80 18.14 -127.79 -2.32 -30.12 16 27 O -1.00 -26.64 18.14 -127.79 -2.32 -28.96 16 28 N -1.09 -19.93 5.67 -152.02 -0.86 -20.80 16 29 H 0.05 0.96 5.91 -2.39 -0.01 0.95 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.09 0.38 8.13 -2.39 -0.02 0.36 16 32 H 0.11 1.11 8.12 -2.39 -0.02 1.09 16 33 H 0.15 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.41 5.39 8.71 -92.71 -0.81 4.59 16 35 H 0.10 1.96 8.10 -2.38 -0.02 1.94 16 36 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.02 0.68 7.84 -2.39 -0.02 0.66 16 38 H 0.02 0.87 8.14 -2.38 -0.02 0.86 16 39 H 0.37 20.49 7.67 -92.71 -0.71 19.78 16 40 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.49 7.90 -2.38 -0.02 2.47 16 43 H 0.11 0.00 7.81 -2.39 -0.02 -0.02 16 44 H 0.15 -0.71 7.77 -2.39 -0.02 -0.73 16 45 H 0.17 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.17 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.43 10.13 6.86 -93.00 -0.64 9.49 16 Total: -1.00 -89.47 386.68 -4.43 -93.91 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -1.15 Total: 30.16 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.55 Total: -9.13 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -4.82 Total: -136.32 kcal Atomic # 8 Polarization: -68.99 SS G_CDS: -4.67 Total: -73.66 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Atomic # 16 Polarization: 46.50 SS G_CDS: -0.37 Total: 46.13 kcal Total: -89.47 -4.43 -93.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571187380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.265 kcal (2) G-P(sol) polarization free energy of solvation -89.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds