Wall clock time and date at job start Wed Apr 1 2020 03:00:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.34659 * 125.80069 * 2 1
4 4 H 0.96999 * 124.85218 * 0.06186 * 3 2 1
5 5 C 1.36447 * 110.29455 * 180.29228 * 3 2 1
6 6 C 1.34486 * 108.86148 * 359.74542 * 5 3 2
7 7 C 1.36772 * 125.80163 * 179.86072 * 2 1 3
8 8 C 1.47260 * 126.94077 * 359.97438 * 7 2 1
9 9 O 1.21628 * 120.00263 * 10.31766 * 8 7 2
10 10 N 1.34776 * 120.00140 * 190.32246 * 8 7 2
11 11 C 1.48147 * 127.83542 * 0.09137 * 10 8 7
12 12 C 1.54388 * 104.61741 * 140.39446 * 11 10 8
13 13 H 1.08996 * 110.34692 * 264.99572 * 12 11 10
14 14 C 1.52999 * 110.34181 * 142.73682 * 12 11 10
15 15 F 1.39905 * 109.47588 * 304.46432 * 14 12 11
16 16 F 1.39907 * 109.47297 * 64.46478 * 14 12 11
17 17 F 1.39897 * 109.47328 * 184.46271 * 14 12 11
18 18 C 1.54286 * 104.95989 * 23.86887 * 12 11 10
19 19 H 1.09000 * 110.43010 * 118.91252 * 18 12 11
20 20 C 1.52996 * 110.34155 * 241.12815 * 18 12 11
21 21 N 1.46502 * 109.47035 * 181.99072 * 20 18 12
22 22 C 1.36940 * 120.00178 * 179.72286 * 21 20 18
23 23 H 1.08001 * 119.99710 * 0.27977 * 22 21 20
24 24 C 1.38813 * 120.00091 * 180.27412 * 22 21 20
25 25 N 1.31617 * 119.99752 * 180.02562 * 24 22 21
26 26 Si 1.86801 * 120.00122 * 359.97438 * 24 22 21
27 27 H 1.48501 * 109.46875 * 89.99706 * 26 24 22
28 28 H 1.48493 * 109.47188 * 210.00036 * 26 24 22
29 29 H 1.48495 * 109.46987 * 330.00376 * 26 24 22
30 30 C 1.48141 * 127.84173 * 180.02562 * 10 8 7
31 31 H 1.09002 * 109.47786 * 270.13689 * 1 2 3
32 32 H 1.09002 * 109.47367 * 30.13581 * 1 2 3
33 33 H 1.09000 * 109.47194 * 150.13121 * 1 2 3
34 34 H 1.08001 * 125.56884 * 179.72799 * 5 3 2
35 35 H 1.07999 * 126.83849 * 179.97438 * 6 5 3
36 36 H 1.09002 * 110.40852 * 259.17810 * 11 10 8
37 37 H 1.09005 * 110.41201 * 21.49517 * 11 10 8
38 38 H 1.08997 * 109.47572 * 61.99038 * 20 18 12
39 39 H 1.08997 * 109.47104 * 301.98960 * 20 18 12
40 40 H 0.96998 * 120.00240 * 359.97438 * 21 20 18
41 41 H 0.96993 * 119.99887 * 180.02562 * 25 24 22
42 42 H 1.09002 * 110.41108 * 100.82049 * 30 10 8
43 43 H 1.09007 * 110.50480 * 338.43352 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2947 1.0922 0.0000
4 1 1.9733 2.0074 0.0009
5 6 3.6095 0.7274 -0.0065
6 6 3.6882 -0.6152 -0.0052
7 6 2.3070 -1.1093 0.0027
8 6 1.8702 -2.5156 0.0066
9 8 0.7001 -2.7895 -0.1809
10 7 2.7669 -3.4992 0.2181
11 6 4.2215 -3.3652 0.4649
12 6 4.5323 -4.4224 1.5463
13 1 4.5076 -3.9693 2.5373
14 6 5.8972 -5.0632 1.2869
15 9 5.9251 -5.5936 -0.0073
16 9 6.8990 -4.0951 1.4158
17 9 6.1158 -6.0867 2.2152
18 6 3.4115 -5.4737 1.4092
19 1 3.8319 -6.4475 1.1578
20 6 2.6041 -5.5626 2.7057
21 7 1.5768 -6.5984 2.5712
22 6 0.7305 -6.8631 3.6148
23 1 0.8175 -6.3051 4.5354
24 6 -0.2391 -7.8484 3.4894
25 7 -1.0528 -8.1024 4.4923
26 14 -0.3902 -8.8129 1.8968
27 1 0.4728 -10.0195 1.9651
28 1 -1.8030 -9.2253 1.6999
29 1 0.0398 -7.9606 0.7593
30 6 2.5215 -4.9596 0.2578
31 1 -0.3635 0.0025 1.0276
32 1 -0.3634 0.8888 -0.5159
33 1 -0.3633 -0.8912 -0.5118
34 1 4.4497 1.4060 -0.0122
35 1 4.5889 -1.2110 -0.0096
36 1 4.7826 -3.5765 -0.4454
37 1 4.4545 -2.3651 0.8306
38 1 2.1280 -4.6023 2.9039
39 1 3.2692 -5.8156 3.5313
40 1 1.4984 -7.0993 1.7443
41 1 -1.7301 -8.7911 4.4048
42 1 2.8165 -5.4205 -0.6849
43 1 1.4718 -5.1648 0.4684
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001571569743.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:42
Heat of formation + Delta-G solvation = -111.895105 kcal
Electronic energy + Delta-G solvation = -31532.260896 eV
Core-core repulsion = 26778.183624 eV
Total energy + Delta-G solvation = -4754.077272 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.141 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-50.18348 -47.67813 -47.61673 -41.48237 -39.74309 -37.63439 -34.82364 -32.66446
-31.69021 -31.32537 -31.24042 -29.24056 -26.96205 -25.91598 -25.61504 -23.45196
-22.05121 -21.61715 -21.02946 -20.20148 -18.89388 -18.55393 -18.19546 -17.89496
-17.51872 -17.46109 -16.15339 -15.47655 -15.34212 -14.84294 -14.75709 -14.57634
-14.45231 -14.22572 -14.11474 -14.03605 -13.77933 -13.77794 -13.59538 -13.51434
-13.28568 -13.08964 -12.85447 -12.70140 -12.60110 -12.37910 -12.02992 -11.80530
-11.77658 -11.52038 -11.14886 -10.95089 -10.75513 -10.53869 -10.11051 -9.74097
-9.55370 -9.06588 -8.88341 -8.71372 -8.33125 -7.22108 -5.73068 -3.09422
1.65741 2.20381 2.56026 2.83920 3.16448 3.42603 3.44936 3.50017
3.51023 3.70472 3.75572 3.91926 4.45536 4.54096 4.63235 4.63594
4.72607 4.88394 4.98058 4.99128 5.07346 5.13269 5.23532 5.39083
5.50903 5.54137 5.60182 5.61588 5.63774 5.71078 5.80352 5.93848
6.05741 6.18328 6.26243 6.52871 6.54677 6.65913 6.73667 7.19845
7.64622 8.00885 8.37706 8.44985 9.22993 9.95306 10.13758 11.45263
Molecular weight = 345.14amu
Principal moments of inertia in cm(-1)
A = 0.008519 B = 0.004437 C = 0.003182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3285.800866 B = 6308.474515 C = 8796.623912
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C 0.109 3.891
3 N -0.553 5.553
4 H 0.415 0.585
5 C -0.017 4.017
6 C -0.181 4.181
7 C -0.230 4.230
8 C 0.614 3.386
9 O -0.537 6.537
10 N -0.611 5.611
11 C 0.097 3.903
12 C -0.149 4.149
13 H 0.130 0.870
14 C 0.461 3.539
15 F -0.181 7.181
16 F -0.185 7.185
17 F -0.175 7.175
18 C -0.106 4.106
19 H 0.096 0.904
20 C 0.169 3.831
21 N -0.753 5.753
22 C -0.244 4.244
23 H 0.090 0.910
24 C 0.007 3.993
25 N -0.934 5.934
26 Si 0.883 3.117
27 H -0.284 1.284
28 H -0.290 1.290
29 H -0.276 1.276
30 C 0.109 3.891
31 H 0.079 0.921
32 H 0.063 0.937
33 H 0.105 0.895
34 H 0.169 0.831
35 H 0.155 0.845
36 H 0.081 0.919
37 H 0.111 0.889
38 H 0.033 0.967
39 H 0.034 0.966
40 H 0.361 0.639
41 H 0.259 0.741
42 H 0.072 0.928
43 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.058 19.450 -11.511 27.158
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.009 4.009
3 N -0.149 5.149
4 H 0.252 0.748
5 C -0.144 4.144
6 C -0.205 4.205
7 C -0.239 4.239
8 C 0.405 3.595
9 O -0.415 6.415
10 N -0.344 5.344
11 C -0.027 4.027
12 C -0.170 4.170
13 H 0.148 0.852
14 C 0.406 3.594
15 F -0.162 7.162
16 F -0.166 7.166
17 F -0.157 7.157
18 C -0.126 4.126
19 H 0.114 0.886
20 C 0.042 3.958
21 N -0.399 5.399
22 C -0.374 4.374
23 H 0.108 0.892
24 C -0.189 4.189
25 N -0.581 5.581
26 Si 0.713 3.287
27 H -0.210 1.210
28 H -0.217 1.217
29 H -0.202 1.202
30 C -0.014 4.014
31 H 0.098 0.902
32 H 0.082 0.918
33 H 0.124 0.876
34 H 0.186 0.814
35 H 0.172 0.828
36 H 0.099 0.901
37 H 0.129 0.871
38 H 0.051 0.949
39 H 0.052 0.948
40 H 0.194 0.806
41 H 0.069 0.931
42 H 0.090 0.910
43 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 14.230 19.517 -11.416 26.716
hybrid contribution 0.236 -0.494 -0.999 1.139
sum 14.466 19.023 -12.415 26.931
Atomic orbital electron populations
1.20645 0.86857 1.04490 1.03782 1.20347 0.93794 0.85499 1.01270
1.41616 1.06281 1.08406 1.58617 0.74814 1.21759 0.85677 0.96452
1.10517 1.22460 0.96080 0.93683 1.08262 1.20023 0.93260 0.91723
1.18911 1.16890 0.83881 0.83074 0.75635 1.90786 1.16723 1.83504
1.50482 1.48508 1.07429 1.06708 1.71790 1.22779 0.83110 0.99735
0.97073 1.23523 0.90211 0.98743 1.04516 0.85153 1.20365 0.87872
0.76966 0.74153 1.93177 1.96907 1.87159 1.39005 1.93178 1.64548
1.63246 1.95650 1.93228 1.95574 1.60915 1.65942 1.22435 0.94190
0.97445 0.98523 0.88558 1.20634 0.90112 0.93024 0.92058 1.42649
1.38435 1.42867 1.15929 1.19005 1.08588 1.15927 0.93836 0.89217
1.24646 0.97949 0.99137 0.97149 1.69697 1.22333 1.35318 1.30788
0.86571 0.77221 0.80456 0.84482 1.21041 1.21665 1.20165 1.22470
1.02766 0.78990 0.97127 0.90227 0.91820 0.87615 0.81354 0.82771
0.90111 0.87121 0.94948 0.94839 0.80584 0.93053 0.91028 0.87757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.02 9.99 36.00 0.36 -0.66 16
2 C 0.11 1.18 7.17 -81.88 -0.59 0.60 16
3 N -0.55 -4.11 5.90 -9.11 -0.05 -4.16 16
4 H 0.42 1.67 8.96 -40.82 -0.37 1.31 16
5 C -0.02 -0.12 11.89 -16.82 -0.20 -0.32 16
6 C -0.18 -1.73 9.35 -37.50 -0.35 -2.08 16
7 C -0.23 -2.94 6.20 -103.35 -0.64 -3.58 16
8 C 0.61 9.79 7.89 -12.59 -0.10 9.69 16
9 O -0.54 -10.45 15.08 5.25 0.08 -10.37 16
10 N -0.61 -8.67 3.32 -170.66 -0.57 -9.23 16
11 C 0.10 1.01 5.35 -2.41 -0.01 1.00 16
12 C -0.15 -1.69 2.73 -89.22 -0.24 -1.94 16
13 H 0.13 1.37 7.71 -51.93 -0.40 0.97 16
14 C 0.46 5.17 2.53 37.16 0.09 5.26 16
15 F -0.18 -2.10 16.05 2.25 0.04 -2.06 16
16 F -0.18 -1.92 17.17 2.25 0.04 -1.88 16
17 F -0.18 -2.28 16.93 2.25 0.04 -2.24 16
18 C -0.11 -1.56 2.42 -89.25 -0.22 -1.78 16
19 H 0.10 1.39 7.41 -51.93 -0.38 1.01 16
20 C 0.17 3.21 5.41 -4.04 -0.02 3.19 16
21 N -0.75 -17.96 4.92 -59.91 -0.30 -18.26 16
22 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16
23 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16
24 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16
25 N -0.93 -29.80 13.97 55.49 0.78 -29.03 16
26 Si 0.88 22.53 27.74 -169.99 -4.71 17.82 16
27 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16
28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16
29 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16
30 C 0.11 1.68 6.40 -2.44 -0.02 1.66 16
31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
33 H 0.11 1.35 6.31 -51.93 -0.33 1.03 16
34 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16
35 H 0.16 1.19 5.25 -52.49 -0.28 0.91 16
36 H 0.08 0.75 7.21 -51.93 -0.37 0.37 16
37 H 0.11 0.97 4.39 -51.93 -0.23 0.74 16
38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
40 H 0.36 8.39 5.25 -40.82 -0.21 8.18 16
41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16
42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
43 H 0.10 1.99 7.07 -51.92 -0.37 1.62 16
LS Contribution 359.80 15.07 5.42 5.42
Total: -1.00 -35.97 359.80 -6.49 -42.46
By element:
Atomic # 1 Polarization: 12.60 SS G_CDS: -5.07 Total: 7.54 kcal
Atomic # 6 Polarization: 6.18 SS G_CDS: -2.19 Total: 3.99 kcal
Atomic # 7 Polarization: -60.54 SS G_CDS: -0.14 Total: -60.68 kcal
Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal
Atomic # 9 Polarization: -6.29 SS G_CDS: 0.11 Total: -6.18 kcal
Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.82 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -35.97 -6.49 -42.46 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571569743.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.435 kcal
(2) G-P(sol) polarization free energy of solvation -35.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds