Wall clock time and date at job start Wed Apr 1 2020 03:00:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.34659 * 125.80069 * 2 1
4 4 H 0.96999 * 124.85218 * 0.06186 * 3 2 1
5 5 C 1.36447 * 110.29455 * 180.29228 * 3 2 1
6 6 C 1.34486 * 108.86148 * 359.74542 * 5 3 2
7 7 C 1.36772 * 125.80163 * 179.86072 * 2 1 3
8 8 C 1.47260 * 126.94077 * 359.97438 * 7 2 1
9 9 O 1.21628 * 120.00263 * 10.31766 * 8 7 2
10 10 N 1.34776 * 120.00140 * 190.32246 * 8 7 2
11 11 C 1.48147 * 127.83542 * 0.09137 * 10 8 7
12 12 C 1.54388 * 104.61741 * 140.39446 * 11 10 8
13 13 H 1.08996 * 110.34692 * 264.99572 * 12 11 10
14 14 C 1.52999 * 110.34181 * 142.73682 * 12 11 10
15 15 F 1.39905 * 109.47588 * 304.46432 * 14 12 11
16 16 F 1.39907 * 109.47297 * 64.46478 * 14 12 11
17 17 F 1.39897 * 109.47328 * 184.46271 * 14 12 11
18 18 C 1.54286 * 104.95989 * 23.86887 * 12 11 10
19 19 H 1.09000 * 110.43010 * 118.91252 * 18 12 11
20 20 C 1.52996 * 110.34155 * 241.12815 * 18 12 11
21 21 N 1.46502 * 109.47035 * 181.99072 * 20 18 12
22 22 C 1.36940 * 120.00178 * 179.72286 * 21 20 18
23 23 H 1.08001 * 119.99710 * 0.27977 * 22 21 20
24 24 C 1.38813 * 120.00091 * 180.27412 * 22 21 20
25 25 N 1.31617 * 119.99752 * 180.02562 * 24 22 21
26 26 Si 1.86801 * 120.00122 * 359.97438 * 24 22 21
27 27 H 1.48501 * 109.46875 * 89.99706 * 26 24 22
28 28 H 1.48493 * 109.47188 * 210.00036 * 26 24 22
29 29 H 1.48495 * 109.46987 * 330.00376 * 26 24 22
30 30 C 1.48141 * 127.84173 * 180.02562 * 10 8 7
31 31 H 1.09002 * 109.47786 * 270.13689 * 1 2 3
32 32 H 1.09002 * 109.47367 * 30.13581 * 1 2 3
33 33 H 1.09000 * 109.47194 * 150.13121 * 1 2 3
34 34 H 1.08001 * 125.56884 * 179.72799 * 5 3 2
35 35 H 1.07999 * 126.83849 * 179.97438 * 6 5 3
36 36 H 1.09002 * 110.40852 * 259.17810 * 11 10 8
37 37 H 1.09005 * 110.41201 * 21.49517 * 11 10 8
38 38 H 1.08997 * 109.47572 * 61.99038 * 20 18 12
39 39 H 1.08997 * 109.47104 * 301.98960 * 20 18 12
40 40 H 0.96998 * 120.00240 * 359.97438 * 21 20 18
41 41 H 0.96993 * 119.99887 * 180.02562 * 25 24 22
42 42 H 1.09002 * 110.41108 * 100.82049 * 30 10 8
43 43 H 1.09007 * 110.50480 * 338.43352 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2947 1.0922 0.0000
4 1 1.9733 2.0074 0.0009
5 6 3.6095 0.7274 -0.0065
6 6 3.6882 -0.6152 -0.0052
7 6 2.3070 -1.1093 0.0027
8 6 1.8702 -2.5156 0.0066
9 8 0.7001 -2.7895 -0.1809
10 7 2.7669 -3.4992 0.2181
11 6 4.2215 -3.3652 0.4649
12 6 4.5323 -4.4224 1.5463
13 1 4.5076 -3.9693 2.5373
14 6 5.8972 -5.0632 1.2869
15 9 5.9251 -5.5936 -0.0073
16 9 6.8990 -4.0951 1.4158
17 9 6.1158 -6.0867 2.2152
18 6 3.4115 -5.4737 1.4092
19 1 3.8319 -6.4475 1.1578
20 6 2.6041 -5.5626 2.7057
21 7 1.5768 -6.5984 2.5712
22 6 0.7305 -6.8631 3.6148
23 1 0.8175 -6.3051 4.5354
24 6 -0.2391 -7.8484 3.4894
25 7 -1.0528 -8.1024 4.4923
26 14 -0.3902 -8.8129 1.8968
27 1 0.4728 -10.0195 1.9651
28 1 -1.8030 -9.2253 1.6999
29 1 0.0398 -7.9606 0.7593
30 6 2.5215 -4.9596 0.2578
31 1 -0.3635 0.0025 1.0276
32 1 -0.3634 0.8888 -0.5159
33 1 -0.3633 -0.8912 -0.5118
34 1 4.4497 1.4060 -0.0122
35 1 4.5889 -1.2110 -0.0096
36 1 4.7826 -3.5765 -0.4454
37 1 4.4545 -2.3651 0.8306
38 1 2.1280 -4.6023 2.9039
39 1 3.2692 -5.8156 3.5313
40 1 1.4984 -7.0993 1.7443
41 1 -1.7301 -8.7911 4.4048
42 1 2.8165 -5.4205 -0.6849
43 1 1.4718 -5.1648 0.4684
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001571569743.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:41
Heat of formation + Delta-G solvation = -137.031330 kcal
Electronic energy + Delta-G solvation = -31533.350885 eV
Core-core repulsion = 26778.183624 eV
Total energy + Delta-G solvation = -4755.167261 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.141 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-51.08762 -48.55851 -48.54335 -42.23520 -40.82581 -38.87180 -36.61913 -34.16422
-33.04555 -32.44838 -32.11872 -30.61980 -27.98004 -27.21895 -26.54461 -25.01570
-23.42741 -22.67520 -21.85454 -21.38113 -20.05089 -19.73637 -19.20871 -19.08197
-18.70287 -18.37188 -17.22970 -16.66898 -16.44381 -16.33578 -15.99142 -15.72456
-15.55173 -15.39396 -15.12388 -14.96491 -14.90050 -14.81403 -14.69045 -14.66913
-14.34892 -14.22754 -14.06007 -13.81652 -13.63430 -13.56222 -13.44541 -13.02332
-13.00061 -12.80436 -12.50396 -12.34500 -12.18358 -12.03919 -11.90603 -11.73389
-11.02755 -10.92689 -9.93796 -9.70155 -9.34159 -9.08008 -8.04936 -5.38983
0.73098 1.35979 1.40077 1.46333 1.56576 1.60703 1.95273 2.42143
2.46581 2.49177 2.73693 2.76849 2.96725 3.26646 3.41159 3.58732
3.73796 3.80076 3.91875 3.96018 4.04051 4.15883 4.28263 4.30645
4.34057 4.47885 4.64339 4.67276 4.70782 4.72334 4.81316 4.88599
4.97191 5.01525 5.07982 5.24163 5.32484 5.72000 5.79507 6.00276
6.18197 6.54942 6.69620 7.04616 7.23806 7.79013 7.97864 9.16626
Molecular weight = 345.14amu
Principal moments of inertia in cm(-1)
A = 0.008519 B = 0.004437 C = 0.003182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3285.800866 B = 6308.474515 C = 8796.623912
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.098 4.098
2 C 0.097 3.903
3 N -0.537 5.537
4 H 0.433 0.567
5 C 0.005 3.995
6 C -0.197 4.197
7 C -0.265 4.265
8 C 0.601 3.399
9 O -0.591 6.591
10 N -0.613 5.613
11 C 0.100 3.900
12 C -0.141 4.141
13 H 0.142 0.858
14 C 0.470 3.530
15 F -0.180 7.180
16 F -0.175 7.175
17 F -0.186 7.186
18 C -0.096 4.096
19 H 0.105 0.895
20 C 0.169 3.831
21 N -0.755 5.755
22 C -0.236 4.236
23 H 0.056 0.944
24 C -0.060 4.060
25 N -0.982 5.982
26 Si 0.951 3.049
27 H -0.271 1.271
28 H -0.296 1.296
29 H -0.255 1.255
30 C 0.107 3.893
31 H 0.074 0.926
32 H 0.095 0.905
33 H 0.072 0.928
34 H 0.213 0.787
35 H 0.172 0.828
36 H 0.102 0.898
37 H 0.134 0.866
38 H 0.018 0.982
39 H 0.038 0.962
40 H 0.366 0.634
41 H 0.258 0.742
42 H 0.092 0.908
43 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.197 21.491 -13.416 31.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.022 4.022
3 N -0.134 5.134
4 H 0.273 0.727
5 C -0.123 4.123
6 C -0.220 4.220
7 C -0.275 4.275
8 C 0.395 3.605
9 O -0.473 6.473
10 N -0.345 5.345
11 C -0.022 4.022
12 C -0.161 4.161
13 H 0.159 0.841
14 C 0.416 3.584
15 F -0.162 7.162
16 F -0.156 7.156
17 F -0.167 7.167
18 C -0.116 4.116
19 H 0.123 0.877
20 C 0.043 3.957
21 N -0.401 5.401
22 C -0.367 4.367
23 H 0.074 0.926
24 C -0.251 4.251
25 N -0.633 5.633
26 Si 0.778 3.222
27 H -0.196 1.196
28 H -0.222 1.222
29 H -0.180 1.180
30 C -0.016 4.016
31 H 0.093 0.907
32 H 0.113 0.887
33 H 0.091 0.909
34 H 0.229 0.771
35 H 0.189 0.811
36 H 0.120 0.880
37 H 0.152 0.848
38 H 0.036 0.964
39 H 0.056 0.944
40 H 0.200 0.800
41 H 0.067 0.933
42 H 0.110 0.890
43 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 17.455 21.610 -13.336 30.814
hybrid contribution -0.701 -0.991 -0.335 1.259
sum 16.754 20.619 -13.671 29.879
Atomic orbital electron populations
1.20550 0.87171 1.04383 1.03424 1.20368 0.94048 0.86348 1.01461
1.41625 1.06184 1.08540 1.57017 0.72656 1.22433 0.86262 0.96352
1.07210 1.22662 0.94969 0.94876 1.09500 1.20054 0.95701 0.90289
1.21467 1.17546 0.83424 0.84653 0.74857 1.90746 1.18956 1.84482
1.53082 1.48569 1.08985 1.05808 1.71154 1.23026 0.80844 1.00632
0.97709 1.23455 0.89209 0.97768 1.05715 0.84054 1.20146 0.87684
0.76702 0.73902 1.93185 1.96902 1.87186 1.38921 1.93202 1.64034
1.62763 1.95592 1.93216 1.95619 1.61488 1.66416 1.22225 0.94564
0.99119 0.95669 0.87703 1.20726 0.89344 0.90769 0.94879 1.42642
1.38758 1.43935 1.14804 1.18993 1.09005 1.14803 0.93856 0.92589
1.25474 0.97914 1.00792 1.00967 1.69876 1.23499 1.36514 1.33394
0.85468 0.76955 0.79294 0.80504 1.19647 1.22241 1.17982 1.22379
1.00452 0.80483 0.98258 0.90734 0.88658 0.90928 0.77059 0.81056
0.88034 0.84848 0.96438 0.94369 0.80025 0.93270 0.88970 0.91963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.02 9.99 71.23 0.71 -1.30 16
2 C 0.10 2.02 7.17 41.78 0.30 2.32 16
3 N -0.54 -6.23 5.90 -182.73 -1.08 -7.31 16
4 H 0.43 1.87 8.96 -92.71 -0.83 1.04 16
5 C 0.01 0.05 11.89 83.12 0.99 1.04 16
6 C -0.20 -3.13 9.35 23.62 0.22 -2.91 16
7 C -0.27 -6.57 6.20 -19.04 -0.12 -6.69 16
8 C 0.60 19.66 7.89 86.62 0.68 20.35 16
9 O -0.59 -24.53 15.08 -4.12 -0.06 -24.60 16
10 N -0.61 -17.09 3.32 -812.10 -2.69 -19.78 16
11 C 0.10 1.83 5.35 86.53 0.46 2.29 16
12 C -0.14 -2.86 2.73 -9.89 -0.03 -2.89 16
13 H 0.14 2.62 7.71 -2.39 -0.02 2.60 16
14 C 0.47 9.14 2.53 71.98 0.18 9.32 16
15 F -0.18 -3.60 16.05 44.97 0.72 -2.88 16
16 F -0.17 -2.99 17.17 44.97 0.77 -2.22 16
17 F -0.19 -4.40 16.93 44.97 0.76 -3.64 16
18 C -0.10 -2.72 2.42 -9.91 -0.02 -2.74 16
19 H 0.10 2.83 7.41 -2.39 -0.02 2.81 16
20 C 0.17 6.47 5.41 86.38 0.47 6.94 16
21 N -0.76 -36.54 4.92 -343.46 -1.69 -38.23 16
22 C -0.24 -14.00 10.47 84.03 0.88 -13.12 16
23 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16
24 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16
25 N -0.98 -64.89 13.97 21.65 0.30 -64.59 16
26 Si 0.95 47.24 27.74 68.60 1.90 49.14 16
27 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16
28 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16
29 H -0.26 -11.66 6.52 99.48 0.65 -11.01 16
30 C 0.11 3.28 6.40 86.52 0.55 3.84 16
31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
33 H 0.07 2.02 6.31 -2.39 -0.02 2.00 16
34 H 0.21 0.30 8.06 -2.91 -0.02 0.28 16
35 H 0.17 1.92 5.25 -2.91 -0.02 1.91 16
36 H 0.10 1.50 7.21 -2.39 -0.02 1.48 16
37 H 0.13 1.88 4.39 -2.38 -0.01 1.87 16
38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
40 H 0.37 16.91 5.25 -92.71 -0.49 16.42 16
41 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16
42 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
43 H 0.06 2.46 7.07 -2.38 -0.02 2.44 16
Total: -1.00 -83.36 359.80 4.40 -78.96
By element:
Atomic # 1 Polarization: 22.17 SS G_CDS: -0.28 Total: 21.89 kcal
Atomic # 6 Polarization: 7.50 SS G_CDS: 5.75 Total: 13.25 kcal
Atomic # 7 Polarization: -124.74 SS G_CDS: -5.16 Total: -129.90 kcal
Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.60 kcal
Atomic # 9 Polarization: -10.99 SS G_CDS: 2.26 Total: -8.74 kcal
Atomic # 14 Polarization: 47.24 SS G_CDS: 1.90 Total: 49.14 kcal
Total: -83.36 4.40 -78.96 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571569743.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.073 kcal
(2) G-P(sol) polarization free energy of solvation -83.359 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.432 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.958 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds