Wall clock time and date at job start Wed Apr 1 2020 03:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34661 * 125.80064 * 2 1 4 4 H 0.96993 * 124.84972 * 0.02562 * 3 2 1 5 5 C 1.36453 * 110.29416 * 179.97438 * 3 2 1 6 6 C 1.34488 * 108.85547 * 359.70564 * 5 3 2 7 7 C 1.36775 * 125.80206 * 179.97438 * 2 1 3 8 8 C 1.47259 * 126.93965 * 0.02562 * 7 2 1 9 9 O 1.21635 * 120.00348 * 349.65246 * 8 7 2 10 10 N 1.34776 * 119.99816 * 169.92629 * 8 7 2 11 11 C 1.48147 * 127.83727 * 179.35243 * 10 8 7 12 12 C 1.54794 * 104.41751 * 140.37022 * 11 10 8 13 13 H 1.09004 * 110.19771 * 142.93493 * 12 11 10 14 14 C 1.52992 * 110.61232 * 265.18162 * 12 11 10 15 15 N 1.46502 * 109.47180 * 290.64175 * 14 12 11 16 16 C 1.36936 * 119.99765 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00440 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99677 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00490 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00088 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46798 * 90.00198 * 20 18 16 22 22 H 1.48499 * 109.47493 * 209.99905 * 20 18 16 23 23 H 1.48499 * 109.47288 * 330.00228 * 20 18 16 24 24 C 1.54290 * 104.91744 * 24.16961 * 12 11 10 25 25 H 1.09002 * 110.42830 * 240.89291 * 24 12 11 26 26 C 1.52991 * 110.34563 * 118.67820 * 24 12 11 27 27 F 1.39898 * 109.47343 * 303.00748 * 26 24 12 28 28 F 1.39903 * 109.47322 * 63.00635 * 26 24 12 29 29 F 1.39905 * 109.47192 * 183.00538 * 26 24 12 30 30 C 1.48148 * 127.83865 * 359.67726 * 10 8 7 31 31 H 1.09008 * 109.46999 * 270.00526 * 1 2 3 32 32 H 1.08995 * 109.47395 * 30.00150 * 1 2 3 33 33 H 1.08993 * 109.47221 * 150.00742 * 1 2 3 34 34 H 1.08002 * 125.56639 * 179.97438 * 5 3 2 35 35 H 1.07997 * 126.82775 * 180.28185 * 6 5 3 36 36 H 1.08999 * 110.40749 * 259.20312 * 11 10 8 37 37 H 1.09003 * 110.41078 * 21.63526 * 11 10 8 38 38 H 1.08997 * 109.47503 * 50.64866 * 14 12 11 39 39 H 1.09008 * 109.46686 * 170.64988 * 14 12 11 40 40 H 0.97000 * 119.99702 * 0.02562 * 15 14 12 41 41 H 0.96992 * 120.00393 * 179.97438 * 19 18 16 42 42 H 1.08994 * 110.40350 * 338.37185 * 30 10 8 43 43 H 1.09006 * 110.40708 * 100.68119 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0073 0.0004 5 6 3.6096 0.7274 0.0006 6 6 3.6881 -0.6152 0.0075 7 6 2.3071 -1.1093 0.0005 8 6 1.8702 -2.5156 0.0006 9 8 0.7001 -2.7890 0.1894 10 7 2.7678 -3.5001 -0.2031 11 6 2.5247 -4.9613 -0.2252 12 6 3.4151 -5.4827 -1.3790 13 1 3.8374 -6.4535 -1.1193 14 6 2.6110 -5.5833 -2.6767 15 7 1.6320 -6.6671 -2.5618 16 6 0.7939 -6.9464 -3.6081 17 1 0.8549 -6.3681 -4.5181 18 6 -0.1342 -7.9729 -3.4989 19 7 -0.9395 -8.2418 -4.5047 20 14 -0.2393 -8.9736 -1.9251 21 1 -1.2064 -8.3353 -0.9963 22 1 -0.6942 -10.3509 -2.2436 23 1 1.0991 -9.0302 -1.2841 24 6 4.5355 -4.4316 -1.5223 25 1 4.5136 -3.9853 -2.5165 26 6 5.9005 -5.0695 -1.2567 27 9 5.9040 -5.6507 0.0159 28 9 6.1507 -6.0534 -2.2193 29 9 6.8950 -4.0879 -1.3238 30 6 4.2227 -3.3669 -0.4490 31 1 -0.3633 0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5137 34 1 4.4498 1.4060 0.0003 35 1 4.5889 -1.2109 0.0139 36 1 2.8236 -5.4107 0.7218 37 1 1.4745 -5.1688 -0.4307 38 1 2.0917 -4.6420 -2.8563 39 1 3.2861 -5.7902 -3.5072 40 1 1.5774 -7.1867 -1.7445 41 1 -1.5877 -8.9593 -4.4286 42 1 4.4550 -2.3700 -0.8234 43 1 4.7826 -3.5691 0.4641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571569745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:49 Heat of formation + Delta-G solvation = -112.378298 kcal Electronic energy + Delta-G solvation = -31506.516153 eV Core-core repulsion = 26752.417928 eV Total energy + Delta-G solvation = -4754.098225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.17924 -47.67578 -47.61010 -41.48810 -39.73316 -37.62640 -34.82272 -32.66235 -31.70647 -31.32312 -31.24608 -29.24084 -26.96277 -25.91400 -25.62395 -23.45049 -22.04236 -21.61928 -21.03531 -20.23059 -18.88475 -18.54710 -18.19920 -17.89380 -17.51203 -17.45320 -16.16047 -15.50639 -15.33413 -14.86057 -14.74537 -14.56588 -14.45369 -14.24528 -14.11485 -14.03124 -13.77479 -13.77135 -13.59923 -13.50257 -13.30779 -13.05200 -12.87421 -12.70545 -12.56515 -12.39385 -12.03960 -11.83715 -11.80775 -11.50127 -11.16588 -10.93603 -10.75765 -10.53923 -10.11819 -9.76963 -9.55632 -9.07170 -8.88228 -8.72712 -8.33778 -7.22176 -5.73128 -3.09510 1.65261 2.19663 2.56179 2.83527 3.15734 3.41880 3.45171 3.49788 3.49956 3.70530 3.75845 3.92194 4.45201 4.54109 4.62313 4.63442 4.72106 4.88226 4.97637 4.98616 5.06109 5.13050 5.22502 5.38331 5.49012 5.54272 5.59491 5.61088 5.64329 5.70286 5.80353 5.92994 6.03373 6.15793 6.25173 6.52196 6.54582 6.66139 6.72923 7.19108 7.63488 8.00896 8.36658 8.44928 9.22990 9.95280 10.13819 11.45180 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.004356 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.191264 B = 6425.779331 C = 8860.202862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.108 3.892 3 N -0.553 5.553 4 H 0.415 0.585 5 C -0.016 4.016 6 C -0.181 4.181 7 C -0.229 4.229 8 C 0.613 3.387 9 O -0.537 6.537 10 N -0.612 5.612 11 C 0.109 3.891 12 C -0.106 4.106 13 H 0.096 0.904 14 C 0.169 3.831 15 N -0.753 5.753 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.007 3.993 19 N -0.934 5.934 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.149 4.149 25 H 0.130 0.870 26 C 0.461 3.539 27 F -0.181 7.181 28 F -0.175 7.175 29 F -0.185 7.185 30 C 0.097 3.903 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.169 0.831 35 H 0.155 0.845 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.111 0.889 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.726 19.898 11.564 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.010 4.010 3 N -0.149 5.149 4 H 0.252 0.748 5 C -0.144 4.144 6 C -0.205 4.205 7 C -0.239 4.239 8 C 0.404 3.596 9 O -0.415 6.415 10 N -0.345 5.345 11 C -0.013 4.013 12 C -0.126 4.126 13 H 0.114 0.886 14 C 0.042 3.958 15 N -0.399 5.399 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.189 4.189 19 N -0.581 5.581 20 Si 0.712 3.288 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.170 4.170 25 H 0.148 0.852 26 C 0.406 3.594 27 F -0.162 7.162 28 F -0.157 7.157 29 F -0.166 7.166 30 C -0.026 4.026 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.187 0.813 35 H 0.172 0.828 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.129 0.871 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.901 19.961 11.465 26.891 hybrid contribution 0.286 -0.541 1.014 1.184 sum 14.186 19.420 12.478 27.094 Atomic orbital electron populations 1.20566 0.86827 1.04250 1.03579 1.20343 0.93792 0.85517 1.01330 1.41610 1.06278 1.08400 1.58636 0.74808 1.21765 0.85671 0.96453 1.10485 1.22461 0.96087 0.93686 1.08256 1.20032 0.93264 0.91723 1.18852 1.16893 0.83900 0.83083 0.75681 1.90806 1.16718 1.83611 1.50337 1.48513 1.07435 1.06646 1.71916 1.22556 1.02655 0.78919 0.97147 1.22513 0.94202 0.97410 0.98448 0.88595 1.20631 0.90727 0.92430 0.92013 1.42647 1.41908 1.38312 1.17023 1.19004 1.10141 1.13774 0.94452 0.89211 1.24646 0.98164 0.98874 0.97198 1.69696 1.24243 1.33447 1.30751 0.86581 0.77710 0.80190 0.84297 1.20863 1.21703 1.20267 1.23525 0.90230 0.98725 1.04516 0.85160 1.20369 0.87881 0.76917 0.74203 1.93177 1.96882 1.85260 1.40917 1.93231 1.95123 1.63654 1.63668 1.93176 1.65037 1.62327 1.96096 1.22763 0.83060 0.99658 0.97139 0.90265 0.91811 0.88074 0.81346 0.82765 0.90930 0.87854 0.94864 0.94904 0.80592 0.93051 0.87131 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.79 36.00 0.35 -0.59 16 2 C 0.11 1.16 7.17 -81.88 -0.59 0.57 16 3 N -0.55 -4.05 5.90 -9.10 -0.05 -4.10 16 4 H 0.42 1.63 8.96 -40.82 -0.37 1.26 16 5 C -0.02 -0.12 11.89 -16.82 -0.20 -0.32 16 6 C -0.18 -1.71 9.35 -37.50 -0.35 -2.06 16 7 C -0.23 -2.90 6.20 -103.35 -0.64 -3.54 16 8 C 0.61 9.67 7.89 -12.59 -0.10 9.57 16 9 O -0.54 -10.34 15.26 5.25 0.08 -10.26 16 10 N -0.61 -8.57 3.31 -170.37 -0.56 -9.14 16 11 C 0.11 1.66 6.51 -2.19 -0.01 1.65 16 12 C -0.11 -1.56 2.38 -89.00 -0.21 -1.77 16 13 H 0.10 1.41 7.39 -51.93 -0.38 1.02 16 14 C 0.17 3.21 5.39 -4.04 -0.02 3.19 16 15 N -0.75 -17.96 5.03 -59.91 -0.30 -18.27 16 16 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 20 Si 0.88 22.50 27.73 -169.99 -4.71 17.78 16 21 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 24 C -0.15 -1.69 2.72 -89.22 -0.24 -1.94 16 25 H 0.13 1.36 7.72 -51.93 -0.40 0.96 16 26 C 0.46 5.20 2.51 37.15 0.09 5.29 16 27 F -0.18 -2.12 16.05 2.25 0.04 -2.08 16 28 F -0.18 -2.31 17.07 2.25 0.04 -2.27 16 29 F -0.18 -1.92 17.11 2.25 0.04 -1.88 16 30 C 0.10 1.01 5.27 -2.41 -0.01 1.00 16 31 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 1.31 6.73 -51.93 -0.35 0.96 16 34 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.16 1.18 5.25 -52.49 -0.28 0.90 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.92 7.34 -51.93 -0.38 1.54 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 40 H 0.36 8.39 5.48 -40.82 -0.22 8.17 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 42 H 0.11 0.96 4.41 -51.93 -0.23 0.73 16 43 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -35.98 360.92 -6.53 -42.51 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.12 Total: 7.27 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.19 Total: 4.00 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.14 Total: -60.51 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.11 Total: -6.23 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.98 -6.53 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571569745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.868 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds