Wall clock time and date at job start Wed Apr 1 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34661 * 125.80064 * 2 1 4 4 H 0.96993 * 124.84972 * 0.02562 * 3 2 1 5 5 C 1.36453 * 110.29416 * 179.97438 * 3 2 1 6 6 C 1.34488 * 108.85547 * 359.70564 * 5 3 2 7 7 C 1.36775 * 125.80206 * 179.97438 * 2 1 3 8 8 C 1.47259 * 126.93965 * 0.02562 * 7 2 1 9 9 O 1.21635 * 120.00348 * 349.65246 * 8 7 2 10 10 N 1.34776 * 119.99816 * 169.92629 * 8 7 2 11 11 C 1.48147 * 127.83727 * 179.35243 * 10 8 7 12 12 C 1.54794 * 104.41751 * 140.37022 * 11 10 8 13 13 H 1.09004 * 110.19771 * 142.93493 * 12 11 10 14 14 C 1.52992 * 110.61232 * 265.18162 * 12 11 10 15 15 N 1.46502 * 109.47180 * 290.64175 * 14 12 11 16 16 C 1.36936 * 119.99765 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00440 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99677 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00490 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00088 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46798 * 90.00198 * 20 18 16 22 22 H 1.48499 * 109.47493 * 209.99905 * 20 18 16 23 23 H 1.48499 * 109.47288 * 330.00228 * 20 18 16 24 24 C 1.54290 * 104.91744 * 24.16961 * 12 11 10 25 25 H 1.09002 * 110.42830 * 240.89291 * 24 12 11 26 26 C 1.52991 * 110.34563 * 118.67820 * 24 12 11 27 27 F 1.39898 * 109.47343 * 303.00748 * 26 24 12 28 28 F 1.39903 * 109.47322 * 63.00635 * 26 24 12 29 29 F 1.39905 * 109.47192 * 183.00538 * 26 24 12 30 30 C 1.48148 * 127.83865 * 359.67726 * 10 8 7 31 31 H 1.09008 * 109.46999 * 270.00526 * 1 2 3 32 32 H 1.08995 * 109.47395 * 30.00150 * 1 2 3 33 33 H 1.08993 * 109.47221 * 150.00742 * 1 2 3 34 34 H 1.08002 * 125.56639 * 179.97438 * 5 3 2 35 35 H 1.07997 * 126.82775 * 180.28185 * 6 5 3 36 36 H 1.08999 * 110.40749 * 259.20312 * 11 10 8 37 37 H 1.09003 * 110.41078 * 21.63526 * 11 10 8 38 38 H 1.08997 * 109.47503 * 50.64866 * 14 12 11 39 39 H 1.09008 * 109.46686 * 170.64988 * 14 12 11 40 40 H 0.97000 * 119.99702 * 0.02562 * 15 14 12 41 41 H 0.96992 * 120.00393 * 179.97438 * 19 18 16 42 42 H 1.08994 * 110.40350 * 338.37185 * 30 10 8 43 43 H 1.09006 * 110.40708 * 100.68119 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0073 0.0004 5 6 3.6096 0.7274 0.0006 6 6 3.6881 -0.6152 0.0075 7 6 2.3071 -1.1093 0.0005 8 6 1.8702 -2.5156 0.0006 9 8 0.7001 -2.7890 0.1894 10 7 2.7678 -3.5001 -0.2031 11 6 2.5247 -4.9613 -0.2252 12 6 3.4151 -5.4827 -1.3790 13 1 3.8374 -6.4535 -1.1193 14 6 2.6110 -5.5833 -2.6767 15 7 1.6320 -6.6671 -2.5618 16 6 0.7939 -6.9464 -3.6081 17 1 0.8549 -6.3681 -4.5181 18 6 -0.1342 -7.9729 -3.4989 19 7 -0.9395 -8.2418 -4.5047 20 14 -0.2393 -8.9736 -1.9251 21 1 -1.2064 -8.3353 -0.9963 22 1 -0.6942 -10.3509 -2.2436 23 1 1.0991 -9.0302 -1.2841 24 6 4.5355 -4.4316 -1.5223 25 1 4.5136 -3.9853 -2.5165 26 6 5.9005 -5.0695 -1.2567 27 9 5.9040 -5.6507 0.0159 28 9 6.1507 -6.0534 -2.2193 29 9 6.8950 -4.0879 -1.3238 30 6 4.2227 -3.3669 -0.4490 31 1 -0.3633 0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5137 34 1 4.4498 1.4060 0.0003 35 1 4.5889 -1.2109 0.0139 36 1 2.8236 -5.4107 0.7218 37 1 1.4745 -5.1688 -0.4307 38 1 2.0917 -4.6420 -2.8563 39 1 3.2861 -5.7902 -3.5072 40 1 1.5774 -7.1867 -1.7445 41 1 -1.5877 -8.9593 -4.4286 42 1 4.4550 -2.3700 -0.8234 43 1 4.7826 -3.5691 0.4641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571569745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:47 Heat of formation + Delta-G solvation = -137.536524 kcal Electronic energy + Delta-G solvation = -31507.607096 eV Core-core repulsion = 26752.417928 eV Total energy + Delta-G solvation = -4755.189168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -51.08881 -48.55910 -48.54554 -42.23130 -40.80718 -38.85533 -36.62010 -34.15810 -33.03962 -32.45575 -32.11769 -30.61308 -27.97200 -27.21493 -26.54859 -25.00538 -23.42554 -22.67302 -21.85873 -21.40128 -20.03337 -19.72983 -19.20574 -19.08497 -18.68878 -18.37238 -17.22610 -16.66439 -16.46311 -16.33028 -15.98505 -15.72943 -15.53771 -15.39904 -15.14232 -14.96481 -14.89469 -14.78803 -14.69028 -14.66735 -14.35201 -14.23642 -14.03199 -13.83572 -13.61303 -13.55709 -13.43169 -13.03029 -13.00241 -12.81976 -12.52047 -12.37118 -12.14871 -12.02196 -11.90583 -11.73928 -11.03428 -10.94617 -9.93652 -9.70088 -9.34297 -9.07862 -8.04830 -5.39040 0.73758 1.35505 1.40708 1.46240 1.56547 1.60860 1.95664 2.42277 2.46690 2.48761 2.74108 2.76638 2.96793 3.26907 3.40817 3.58578 3.74119 3.79949 3.91491 3.95316 4.04371 4.16100 4.28078 4.30789 4.34441 4.47876 4.64605 4.68226 4.70347 4.72344 4.80677 4.88882 4.97163 5.01619 5.07803 5.22125 5.32710 5.72060 5.79653 6.00388 6.18250 6.54813 6.69829 7.04653 7.23871 7.78934 7.97995 9.16676 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.004356 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.191264 B = 6425.779331 C = 8860.202862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.097 3.903 3 N -0.537 5.537 4 H 0.433 0.567 5 C 0.005 3.995 6 C -0.197 4.197 7 C -0.265 4.265 8 C 0.601 3.399 9 O -0.590 6.590 10 N -0.614 5.614 11 C 0.108 3.892 12 C -0.096 4.096 13 H 0.103 0.897 14 C 0.169 3.831 15 N -0.755 5.755 16 C -0.236 4.236 17 H 0.056 0.944 18 C -0.060 4.060 19 N -0.982 5.982 20 Si 0.950 3.050 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.246 1.246 24 C -0.141 4.141 25 H 0.141 0.859 26 C 0.470 3.530 27 F -0.181 7.181 28 F -0.186 7.186 29 F -0.174 7.174 30 C 0.101 3.899 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.213 0.787 35 H 0.172 0.828 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.037 0.963 40 H 0.366 0.634 41 H 0.259 0.741 42 H 0.134 0.866 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.897 21.930 13.479 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.023 4.023 3 N -0.134 5.134 4 H 0.273 0.727 5 C -0.123 4.123 6 C -0.220 4.220 7 C -0.275 4.275 8 C 0.395 3.605 9 O -0.472 6.472 10 N -0.346 5.346 11 C -0.015 4.015 12 C -0.116 4.116 13 H 0.121 0.879 14 C 0.043 3.957 15 N -0.401 5.401 16 C -0.367 4.367 17 H 0.074 0.926 18 C -0.252 4.252 19 N -0.633 5.633 20 Si 0.777 3.223 21 H -0.209 1.209 22 H -0.218 1.218 23 H -0.170 1.170 24 C -0.162 4.162 25 H 0.159 0.841 26 C 0.415 3.585 27 F -0.162 7.162 28 F -0.168 7.168 29 F -0.156 7.156 30 C -0.021 4.021 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.229 0.771 35 H 0.189 0.811 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.200 0.800 41 H 0.067 0.933 42 H 0.151 0.849 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.159 22.045 13.395 30.981 hybrid contribution -0.673 -1.027 0.346 1.276 sum 16.486 21.018 13.741 30.039 Atomic orbital electron populations 1.20473 0.87118 1.03767 1.03575 1.20367 0.94053 0.86358 1.01485 1.41618 1.06173 1.08535 1.57044 0.72651 1.22435 0.86259 0.96352 1.07205 1.22661 0.94983 0.94876 1.09497 1.20063 0.95689 0.90307 1.21424 1.17538 0.83433 0.84647 0.74903 1.90763 1.18942 1.84576 1.52948 1.48569 1.08958 1.05768 1.71287 1.22475 1.00426 0.80360 0.98230 1.22296 0.94599 0.99009 0.95673 0.87893 1.20720 0.90043 0.90071 0.94841 1.42636 1.42129 1.39500 1.15873 1.18990 1.10521 1.12715 0.94460 0.92605 1.25478 0.98130 1.00611 1.00942 1.69875 1.25484 1.34541 1.33386 0.85478 0.79042 0.77917 0.79858 1.20941 1.21787 1.17021 1.23458 0.89195 0.97773 1.05736 0.84069 1.20163 0.87726 0.76684 0.73908 1.93184 1.96882 1.85308 1.40864 1.93217 1.95178 1.64207 1.64184 1.93201 1.64518 1.61809 1.96033 1.23007 0.80838 1.00498 0.97780 0.90077 0.88933 0.91815 0.77076 0.81073 0.88814 0.91877 0.96385 0.94465 0.80017 0.93264 0.84866 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.79 71.23 0.70 -1.17 16 2 C 0.10 1.98 7.17 41.78 0.30 2.28 16 3 N -0.54 -6.12 5.90 -182.71 -1.08 -7.20 16 4 H 0.43 1.78 8.96 -92.71 -0.83 0.95 16 5 C 0.01 0.05 11.89 83.12 0.99 1.04 16 6 C -0.20 -3.10 9.35 23.62 0.22 -2.87 16 7 C -0.26 -6.50 6.20 -19.04 -0.12 -6.62 16 8 C 0.60 19.45 7.89 86.61 0.68 20.13 16 9 O -0.59 -24.31 15.26 -4.14 -0.06 -24.37 16 10 N -0.61 -16.91 3.31 -811.18 -2.69 -19.60 16 11 C 0.11 3.26 6.51 86.68 0.56 3.82 16 12 C -0.10 -2.71 2.38 -9.75 -0.02 -2.74 16 13 H 0.10 2.81 7.39 -2.39 -0.02 2.80 16 14 C 0.17 6.49 5.39 86.38 0.47 6.95 16 15 N -0.76 -36.48 5.03 -343.46 -1.73 -38.20 16 16 C -0.24 -14.01 10.47 84.03 0.88 -13.13 16 17 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 18 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 19 N -0.98 -64.87 13.97 21.65 0.30 -64.56 16 20 Si 0.95 47.10 27.73 68.60 1.90 49.00 16 21 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 22 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 24 C -0.14 -2.87 2.72 -9.89 -0.03 -2.90 16 25 H 0.14 2.62 7.72 -2.39 -0.02 2.61 16 26 C 0.47 9.20 2.51 71.98 0.18 9.38 16 27 F -0.18 -3.67 16.05 44.97 0.72 -2.94 16 28 F -0.19 -4.46 17.07 44.97 0.77 -3.69 16 29 F -0.17 -2.98 17.11 44.97 0.77 -2.21 16 30 C 0.10 1.83 5.27 86.53 0.46 2.29 16 31 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.80 6.73 -2.39 -0.02 1.78 16 34 H 0.21 0.28 8.06 -2.91 -0.02 0.25 16 35 H 0.17 1.90 5.25 -2.91 -0.02 1.89 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 2.44 7.34 -2.39 -0.02 2.42 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.37 16.84 5.48 -92.71 -0.51 16.34 16 41 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 42 H 0.13 1.86 4.41 -2.39 -0.01 1.85 16 43 H 0.10 1.48 7.33 -2.38 -0.02 1.46 16 Total: -1.00 -83.37 360.92 4.34 -79.03 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.30 Total: 21.46 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 5.73 Total: 13.29 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -5.19 Total: -129.56 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 2.26 Total: -8.85 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.90 Total: 49.00 kcal Total: -83.37 4.34 -79.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571569745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.508 kcal (2) G-P(sol) polarization free energy of solvation -83.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds