Wall clock time and date at job start Wed Apr 1 2020 04:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29197 * 125.34903 * 2 1 4 4 N 1.40274 * 107.86713 * 180.16391 * 3 2 1 5 5 C 1.46503 * 126.63728 * 179.82353 * 4 3 2 6 6 C 1.50696 * 109.46798 * 269.68609 * 5 4 3 7 7 O 1.21287 * 120.00434 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99885 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00033 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47060 * 35.00669 * 9 8 6 11 11 C 1.53005 * 109.46831 * 155.00073 * 9 8 6 12 12 C 1.53002 * 109.47140 * 295.00216 * 11 9 8 13 13 C 1.50705 * 109.46755 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99708 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99792 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00001 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99979 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46828 * 90.00248 * 17 15 13 19 19 H 1.48504 * 109.47014 * 210.00522 * 17 15 13 20 20 H 1.48496 * 109.46954 * 330.00389 * 17 15 13 21 21 C 1.50703 * 109.47289 * 275.00219 * 9 8 6 22 22 C 1.38231 * 119.99850 * 319.72615 * 21 9 8 23 23 C 1.38234 * 119.99784 * 179.78676 * 22 21 9 24 24 C 1.38238 * 119.99871 * 0.44237 * 23 22 21 25 25 C 1.38233 * 120.00133 * 359.81196 * 24 23 22 26 26 C 1.38230 * 119.99625 * 139.99940 * 21 9 8 27 27 C 1.35035 * 106.72527 * 359.55766 * 4 3 2 28 28 O 1.21705 * 126.37195 * 180.24454 * 27 4 3 29 29 O 1.34311 * 107.25087 * 0.26262 * 27 4 3 30 30 H 1.08998 * 109.47174 * 180.30651 * 1 2 3 31 31 H 1.09002 * 109.46869 * 300.30374 * 1 2 3 32 32 H 1.08997 * 109.47449 * 60.29909 * 1 2 3 33 33 H 1.09001 * 109.47356 * 149.68611 * 5 4 3 34 34 H 1.08997 * 109.47116 * 29.68667 * 5 4 3 35 35 H 0.97000 * 120.00155 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.46972 * 55.00425 * 11 9 8 37 37 H 1.09000 * 109.46692 * 175.00236 * 11 9 8 38 38 H 1.08998 * 109.46677 * 299.99780 * 12 11 9 39 39 H 1.09000 * 109.46863 * 60.00110 * 12 11 9 40 40 H 0.97002 * 120.00121 * 180.02562 * 16 15 13 41 41 H 1.08000 * 120.00199 * 0.02562 * 22 21 9 42 42 H 1.08003 * 120.00226 * 180.27398 * 23 22 21 43 43 H 1.08001 * 119.99751 * 179.83432 * 24 23 22 44 44 H 1.08004 * 120.00235 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00223 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2545 1.0538 0.0000 4 7 3.5925 0.6324 -0.0038 5 6 4.7795 1.4911 -0.0088 6 6 5.1863 1.7773 -1.4313 7 8 4.5480 1.3097 -2.3505 8 7 6.2596 2.5529 -1.6821 9 6 6.6555 2.8308 -3.0650 10 1 5.7652 2.9100 -3.6889 11 6 7.4340 4.1469 -3.1180 12 6 6.5116 5.3014 -2.7212 13 6 7.2783 6.5977 -2.7740 14 1 8.3194 6.5980 -3.0613 15 6 6.6510 7.7831 -2.4544 16 7 7.3198 8.9145 -2.5009 17 14 4.8504 7.7824 -1.9567 18 1 4.7438 7.6171 -0.4848 19 1 4.2257 9.0688 -2.3570 20 1 4.1505 6.6607 -2.6328 21 6 7.5269 1.7109 -3.5728 22 6 8.4796 1.1469 -2.7451 23 6 9.2758 0.1167 -3.2095 24 6 9.1255 -0.3432 -4.5044 25 6 8.1764 0.2244 -5.3337 26 6 7.3772 1.2517 -4.8679 27 6 3.5747 -0.7178 0.0040 28 8 4.5450 -1.4524 0.0078 29 8 2.2868 -1.0992 0.0063 30 1 -0.3633 -1.0276 0.0055 31 1 -0.3633 0.5186 0.8873 32 1 -0.3634 0.5092 -0.8926 33 1 5.5955 0.9859 0.5079 34 1 4.5523 2.4280 0.4997 35 1 6.7704 2.9266 -0.9470 36 1 8.2751 4.0996 -2.4263 37 1 7.8046 4.3093 -4.1301 38 1 5.6706 5.3486 -3.4130 39 1 6.1410 5.1389 -1.7091 40 1 6.8785 9.7484 -2.2758 41 1 8.5993 1.5084 -1.7345 42 1 10.0172 -0.3270 -2.5615 43 1 9.7495 -1.1463 -4.8680 44 1 8.0592 -0.1347 -6.3456 45 1 6.6355 1.6951 -5.5158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628543299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:17 Heat of formation + Delta-G solvation = -17.246033 kcal Electronic energy + Delta-G solvation = -29946.636377 eV Core-core repulsion = 25738.520137 eV Total energy + Delta-G solvation = -4208.116240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.62295 -40.16446 -38.85407 -38.13198 -36.46970 -35.76146 -33.38845 -33.22329 -31.96333 -30.77101 -30.69267 -30.29290 -27.65872 -26.58446 -23.81006 -23.36651 -22.58784 -22.40834 -21.19615 -20.53705 -20.13301 -18.20619 -18.05927 -17.08414 -17.04268 -16.80792 -16.56295 -16.23049 -15.76493 -15.33379 -14.84021 -14.68521 -14.38299 -14.26022 -14.21915 -13.84803 -13.45418 -13.28608 -13.24789 -13.08442 -12.84565 -12.73847 -12.55404 -12.37210 -12.25156 -12.21014 -11.90875 -11.29140 -11.14342 -11.07440 -11.05967 -10.82193 -10.27679 -10.04724 -9.94820 -9.82449 -9.28280 -9.14081 -9.01188 -8.78008 -8.60062 -8.51644 -6.10652 -4.09569 1.23420 1.33861 1.47908 1.53670 2.02125 2.35283 2.55525 3.20363 3.24539 3.33981 3.38338 3.80248 3.93510 4.39147 4.45163 4.61066 4.75759 4.81145 4.88161 4.91626 4.99042 5.02116 5.09011 5.16713 5.22407 5.23269 5.35878 5.44954 5.58579 5.62330 5.69815 5.73322 6.02588 6.12477 6.17130 6.38311 6.49703 6.58986 6.60948 6.70575 6.81689 7.11703 7.14698 7.17489 7.29024 7.30870 7.50959 7.71378 8.18343 8.45905 8.94122 9.51551 11.02599 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007050 B = 0.004081 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.773814 B = 6859.339399 C =10105.595445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.239 3.761 3 N -0.256 5.256 4 N -0.440 5.440 5 C 0.137 3.863 6 C 0.498 3.502 7 O -0.527 6.527 8 N -0.708 5.708 9 C 0.182 3.818 10 H 0.094 0.906 11 C -0.104 4.104 12 C -0.011 4.011 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.083 4.083 22 C -0.106 4.106 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.106 4.106 27 C 0.613 3.387 28 O -0.483 6.483 29 O -0.272 6.272 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.405 0.595 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.263 0.737 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 -19.313 5.478 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.013 3.987 3 N -0.086 5.086 4 N -0.270 5.270 5 C 0.013 3.987 6 C 0.281 3.719 7 O -0.402 6.402 8 N -0.360 5.360 9 C 0.078 3.922 10 H 0.112 0.888 11 C -0.142 4.142 12 C -0.048 4.048 13 C -0.560 4.560 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.084 4.084 22 C -0.124 4.124 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.139 4.139 26 C -0.124 4.124 27 C 0.365 3.635 28 O -0.363 6.363 29 O -0.168 6.168 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.240 0.760 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.252 -19.149 4.842 21.406 hybrid contribution -0.457 -0.278 0.534 0.756 sum -8.709 -19.427 5.376 21.958 Atomic orbital electron populations 1.20520 0.79769 1.05944 1.06008 1.26557 0.96972 0.78806 0.96372 1.77179 0.88084 1.21901 1.21407 1.49207 1.03783 1.05124 1.68928 1.21393 0.84192 0.96639 0.96481 1.20697 0.80972 0.79083 0.91106 1.90729 1.53091 1.50554 1.45871 1.45942 1.29696 1.50881 1.09487 1.20183 0.97267 0.92976 0.81800 0.88781 1.21809 0.98518 0.91105 1.02747 1.19575 0.95415 0.93813 0.96002 1.21106 0.98880 0.89660 1.46404 0.90955 1.25014 0.97843 0.95527 0.94926 1.69908 1.36766 0.98210 1.49151 0.86818 0.85923 0.77644 0.79140 1.20289 1.21365 1.19005 1.20300 0.96617 0.97110 0.94359 1.20898 0.95431 0.96535 0.99570 1.21086 0.99605 0.97340 0.95985 1.21081 0.98855 1.00269 0.94353 1.21083 0.96298 0.96890 0.99624 1.21013 0.99275 0.96705 0.95436 1.19193 0.82040 0.83115 0.79165 1.91212 1.31341 1.58125 1.55647 1.85161 1.18138 1.34920 1.78627 0.88242 0.87504 0.87467 0.85205 0.84894 0.76033 0.91784 0.90715 0.96568 0.96942 0.92685 0.86381 0.86377 0.86505 0.86316 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.24 2.37 8.36 -13.38 -0.11 2.26 16 3 N -0.26 -3.19 12.55 32.46 0.41 -2.78 16 4 N -0.44 -5.98 3.13 -66.44 -0.21 -6.19 16 5 C 0.14 1.56 6.90 -5.19 -0.04 1.52 16 6 C 0.50 7.44 7.86 -10.99 -0.09 7.35 16 7 O -0.53 -10.06 16.09 5.55 0.09 -9.97 16 8 N -0.71 -9.83 3.78 -54.92 -0.21 -10.03 16 9 C 0.18 2.90 2.17 -69.08 -0.15 2.75 16 10 H 0.09 1.68 7.44 -51.93 -0.39 1.29 16 11 C -0.10 -1.86 4.67 -26.73 -0.12 -1.99 16 12 C -0.01 -0.24 3.93 -27.88 -0.11 -0.35 16 13 C -0.52 -14.19 9.66 -34.44 -0.33 -14.52 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 17 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 21 C -0.08 -1.26 4.91 -104.63 -0.51 -1.77 16 22 C -0.11 -1.47 9.32 -39.59 -0.37 -1.83 16 23 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 24 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.11 -1.56 9.67 -39.58 -0.38 -1.94 16 27 C 0.61 9.22 9.26 54.17 0.50 9.72 16 28 O -0.48 -8.47 17.93 -19.01 -0.34 -8.81 16 29 O -0.27 -3.43 10.71 -19.80 -0.21 -3.64 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.13 1.14 8.13 -51.93 -0.42 0.72 16 34 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 4.53 8.60 -40.82 -0.35 4.18 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.26 7.18 -51.93 -0.37 -0.11 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.12 1.43 7.73 -52.49 -0.41 1.02 16 42 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.12 1.69 8.04 -52.48 -0.42 1.26 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -37.97 392.83 -7.20 -45.17 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.12 Total: 2.98 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.63 Total: -2.76 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.77 Total: -45.37 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.46 Total: -22.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.97 -7.20 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628543299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.923 kcal (2) G-P(sol) polarization free energy of solvation -37.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds