Wall clock time and date at job start Wed Apr 1 2020 04:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29197 * 125.34903 * 2 1 4 4 N 1.40274 * 107.86713 * 180.16391 * 3 2 1 5 5 C 1.46503 * 126.63728 * 179.82353 * 4 3 2 6 6 C 1.50696 * 109.46798 * 269.68609 * 5 4 3 7 7 O 1.21287 * 120.00434 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99885 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00033 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47060 * 35.00669 * 9 8 6 11 11 C 1.53005 * 109.46831 * 155.00073 * 9 8 6 12 12 C 1.53002 * 109.47140 * 295.00216 * 11 9 8 13 13 C 1.50705 * 109.46755 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99708 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99792 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00001 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99979 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46828 * 90.00248 * 17 15 13 19 19 H 1.48504 * 109.47014 * 210.00522 * 17 15 13 20 20 H 1.48496 * 109.46954 * 330.00389 * 17 15 13 21 21 C 1.50703 * 109.47289 * 275.00219 * 9 8 6 22 22 C 1.38231 * 119.99850 * 319.72615 * 21 9 8 23 23 C 1.38234 * 119.99784 * 179.78676 * 22 21 9 24 24 C 1.38238 * 119.99871 * 0.44237 * 23 22 21 25 25 C 1.38233 * 120.00133 * 359.81196 * 24 23 22 26 26 C 1.38230 * 119.99625 * 139.99940 * 21 9 8 27 27 C 1.35035 * 106.72527 * 359.55766 * 4 3 2 28 28 O 1.21705 * 126.37195 * 180.24454 * 27 4 3 29 29 O 1.34311 * 107.25087 * 0.26262 * 27 4 3 30 30 H 1.08998 * 109.47174 * 180.30651 * 1 2 3 31 31 H 1.09002 * 109.46869 * 300.30374 * 1 2 3 32 32 H 1.08997 * 109.47449 * 60.29909 * 1 2 3 33 33 H 1.09001 * 109.47356 * 149.68611 * 5 4 3 34 34 H 1.08997 * 109.47116 * 29.68667 * 5 4 3 35 35 H 0.97000 * 120.00155 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.46972 * 55.00425 * 11 9 8 37 37 H 1.09000 * 109.46692 * 175.00236 * 11 9 8 38 38 H 1.08998 * 109.46677 * 299.99780 * 12 11 9 39 39 H 1.09000 * 109.46863 * 60.00110 * 12 11 9 40 40 H 0.97002 * 120.00121 * 180.02562 * 16 15 13 41 41 H 1.08000 * 120.00199 * 0.02562 * 22 21 9 42 42 H 1.08003 * 120.00226 * 180.27398 * 23 22 21 43 43 H 1.08001 * 119.99751 * 179.83432 * 24 23 22 44 44 H 1.08004 * 120.00235 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00223 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2545 1.0538 0.0000 4 7 3.5925 0.6324 -0.0038 5 6 4.7795 1.4911 -0.0088 6 6 5.1863 1.7773 -1.4313 7 8 4.5480 1.3097 -2.3505 8 7 6.2596 2.5529 -1.6821 9 6 6.6555 2.8308 -3.0650 10 1 5.7652 2.9100 -3.6889 11 6 7.4340 4.1469 -3.1180 12 6 6.5116 5.3014 -2.7212 13 6 7.2783 6.5977 -2.7740 14 1 8.3194 6.5980 -3.0613 15 6 6.6510 7.7831 -2.4544 16 7 7.3198 8.9145 -2.5009 17 14 4.8504 7.7824 -1.9567 18 1 4.7438 7.6171 -0.4848 19 1 4.2257 9.0688 -2.3570 20 1 4.1505 6.6607 -2.6328 21 6 7.5269 1.7109 -3.5728 22 6 8.4796 1.1469 -2.7451 23 6 9.2758 0.1167 -3.2095 24 6 9.1255 -0.3432 -4.5044 25 6 8.1764 0.2244 -5.3337 26 6 7.3772 1.2517 -4.8679 27 6 3.5747 -0.7178 0.0040 28 8 4.5450 -1.4524 0.0078 29 8 2.2868 -1.0992 0.0063 30 1 -0.3633 -1.0276 0.0055 31 1 -0.3633 0.5186 0.8873 32 1 -0.3634 0.5092 -0.8926 33 1 5.5955 0.9859 0.5079 34 1 4.5523 2.4280 0.4997 35 1 6.7704 2.9266 -0.9470 36 1 8.2751 4.0996 -2.4263 37 1 7.8046 4.3093 -4.1301 38 1 5.6706 5.3486 -3.4130 39 1 6.1410 5.1389 -1.7091 40 1 6.8785 9.7484 -2.2758 41 1 8.5993 1.5084 -1.7345 42 1 10.0172 -0.3270 -2.5615 43 1 9.7495 -1.1463 -4.8680 44 1 8.0592 -0.1347 -6.3456 45 1 6.6355 1.6951 -5.5158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628543299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:16 Heat of formation + Delta-G solvation = -44.472576 kcal Electronic energy + Delta-G solvation = -29947.817008 eV Core-core repulsion = 25738.520137 eV Total energy + Delta-G solvation = -4209.296872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.57125 -41.33538 -39.92862 -39.26260 -37.54643 -37.00632 -35.13493 -34.19558 -33.35287 -32.17659 -31.77583 -31.06181 -28.80843 -27.87728 -25.25429 -24.45085 -23.58802 -23.35038 -22.47392 -21.96520 -21.39469 -19.29155 -19.07090 -18.86833 -18.13420 -17.96486 -17.72985 -17.21575 -16.91193 -16.51649 -16.16190 -15.87421 -15.57328 -15.32660 -15.19067 -14.95091 -14.93224 -14.54614 -14.35480 -14.25019 -13.90067 -13.67130 -13.60892 -13.48790 -13.34606 -13.11362 -13.04130 -12.94585 -12.61883 -12.35876 -12.15886 -11.95176 -11.91881 -11.68493 -11.65088 -11.34136 -11.23503 -10.75806 -10.25378 -10.12798 -9.81501 -9.61481 -8.28359 -6.32101 0.30214 0.43387 0.50283 0.52283 0.93075 1.34271 1.38701 1.42671 1.49293 1.58212 2.11768 2.35801 2.88091 2.98646 3.07489 3.55762 3.69754 3.75766 3.93386 4.03123 4.09710 4.14255 4.18574 4.25147 4.26885 4.29101 4.57838 4.61057 4.61606 4.65110 4.70492 4.72907 4.86125 5.00445 5.09478 5.12947 5.13489 5.26571 5.43799 5.51837 5.55590 5.59970 5.65384 5.73527 6.11195 6.12646 6.28893 6.32394 6.43173 6.76407 7.08223 7.32729 8.88287 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007050 B = 0.004081 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.773814 B = 6859.339399 C =10105.595445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.252 3.748 3 N -0.287 5.287 4 N -0.442 5.442 5 C 0.136 3.864 6 C 0.496 3.504 7 O -0.574 6.574 8 N -0.700 5.700 9 C 0.196 3.804 10 H 0.071 0.929 11 C -0.090 4.090 12 C -0.005 4.005 13 C -0.528 4.528 14 H 0.035 0.965 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.945 3.055 18 H -0.257 1.257 19 H -0.288 1.288 20 H -0.257 1.257 21 C -0.102 4.102 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.130 4.130 27 C 0.604 3.396 28 O -0.520 6.520 29 O -0.276 6.276 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.419 0.581 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.006 0.994 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.133 0.867 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 -20.889 6.950 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.027 3.973 3 N -0.116 5.116 4 N -0.272 5.272 5 C 0.013 3.987 6 C 0.281 3.719 7 O -0.453 6.453 8 N -0.352 5.352 9 C 0.091 3.909 10 H 0.089 0.911 11 C -0.128 4.128 12 C -0.042 4.042 13 C -0.566 4.566 14 H 0.054 0.946 15 C -0.189 4.189 16 N -0.591 5.591 17 Si 0.769 3.231 18 H -0.182 1.182 19 H -0.214 1.214 20 H -0.181 1.181 21 C -0.103 4.103 22 C -0.135 4.135 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.148 4.148 27 C 0.356 3.644 28 O -0.403 6.403 29 O -0.173 6.173 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.174 0.826 34 H 0.182 0.818 35 H 0.257 0.743 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.151 0.849 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.701 -20.707 6.340 23.730 hybrid contribution 0.012 0.190 0.003 0.190 sum -9.689 -20.517 6.343 23.560 Atomic orbital electron populations 1.20953 0.75614 1.07939 1.07657 1.27856 0.98590 0.77418 0.93423 1.77204 0.87609 1.22835 1.23971 1.49359 1.04803 1.04731 1.68271 1.21678 0.84641 0.98212 0.94186 1.21321 0.80259 0.78099 0.92202 1.90706 1.54583 1.52352 1.47639 1.45841 1.29698 1.50612 1.09094 1.19766 0.96091 0.92314 0.82745 0.91135 1.21579 0.98143 0.90912 1.02168 1.19484 0.95164 0.92858 0.96719 1.21449 0.97788 0.92031 1.45357 0.94636 1.25929 1.02761 0.95042 0.95125 1.70059 1.38993 0.99066 1.50964 0.85736 0.79859 0.77686 0.79809 1.18191 1.21442 1.18109 1.20266 0.97481 0.97582 0.94983 1.21146 0.95254 0.96919 1.00145 1.21470 0.99660 0.96782 0.96601 1.21491 0.98529 1.00496 0.94166 1.21389 0.96007 0.96276 1.00879 1.21197 1.00117 0.97868 0.95629 1.19353 0.82379 0.83528 0.79152 1.91163 1.32708 1.59034 1.57425 1.85155 1.17627 1.36118 1.78359 0.86095 0.84954 0.86237 0.82561 0.81825 0.74328 0.90847 0.91966 0.97547 0.95153 0.92553 0.84922 0.83791 0.83654 0.84234 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 71.24 0.75 0.43 16 2 C 0.25 4.54 8.36 88.50 0.74 5.28 16 3 N -0.29 -6.69 12.55 -166.08 -2.08 -8.78 16 4 N -0.44 -11.51 3.13 -594.34 -1.86 -13.37 16 5 C 0.14 2.84 6.90 85.63 0.59 3.43 16 6 C 0.50 14.38 7.86 87.66 0.69 15.07 16 7 O -0.57 -22.07 16.09 -3.05 -0.05 -22.12 16 8 N -0.70 -18.67 3.78 -446.07 -1.69 -20.36 16 9 C 0.20 6.26 2.17 44.25 0.10 6.35 16 10 H 0.07 2.60 7.44 -2.39 -0.02 2.58 16 11 C -0.09 -3.25 4.67 30.60 0.14 -3.11 16 12 C 0.00 -0.21 3.93 29.85 0.12 -0.10 16 13 C -0.53 -29.21 9.66 25.60 0.25 -28.96 16 14 H 0.04 2.16 7.99 -2.91 -0.02 2.14 16 15 C 0.01 0.48 5.47 84.66 0.46 0.94 16 16 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 17 Si 0.95 43.26 27.47 68.60 1.88 45.14 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.26 -11.32 6.54 99.48 0.65 -10.67 16 21 C -0.10 -3.09 4.91 -19.87 -0.10 -3.19 16 22 C -0.12 -3.08 9.32 22.27 0.21 -2.87 16 23 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 24 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 25 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 26 C -0.13 -3.86 9.67 22.27 0.22 -3.65 16 27 C 0.60 17.92 9.26 129.75 1.20 19.12 16 28 O -0.52 -18.32 17.93 18.77 0.34 -17.99 16 29 O -0.28 -6.70 10.71 15.94 0.17 -6.53 16 30 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.16 2.40 8.13 -2.39 -0.02 2.38 16 34 H 0.16 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.42 8.57 8.60 -92.71 -0.80 7.77 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.01 0.29 7.20 -2.39 -0.02 0.27 16 39 H 0.03 1.23 7.18 -2.39 -0.02 1.21 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.13 2.97 7.73 -2.91 -0.02 2.95 16 42 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 45 H 0.12 3.42 8.04 -2.91 -0.02 3.39 16 Total: -1.00 -85.73 392.83 3.21 -82.52 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.17 Total: 19.29 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.03 Total: 0.30 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -5.33 Total: -100.61 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: 0.46 Total: -46.64 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.14 kcal Total: -85.73 3.21 -82.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628543299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.044 kcal (2) G-P(sol) polarization free energy of solvation -85.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds