Wall clock time and date at job start Wed Apr 1 2020 03:19:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42903 * 113.99340 * 2 1
4 4 C 1.53010 * 109.46766 * 179.97438 * 3 2 1
5 5 N 1.46497 * 109.46814 * 179.97438 * 4 3 2
6 6 N 1.39926 * 125.75537 * 269.97586 * 5 4 3
7 7 C 1.30452 * 108.90258 * 179.74121 * 6 5 4
8 8 C 1.41302 * 108.02031 * 0.44108 * 7 6 5
9 9 C 1.47404 * 126.41662 * 179.82289 * 8 7 6
10 10 O 1.21610 * 120.00430 * 179.68955 * 9 8 7
11 11 N 1.34783 * 119.99698 * 359.68699 * 9 8 7
12 12 C 1.39943 * 119.99862 * 174.78557 * 11 9 8
13 13 C 1.38934 * 120.00163 * 146.29970 * 12 11 9
14 14 C 1.38002 * 119.99348 * 180.02562 * 13 12 11
15 15 C 1.38912 * 120.00560 * 0.02562 * 14 13 12
16 16 O 1.35775 * 119.99403 * 179.97438 * 15 14 13
17 17 C 1.34811 * 117.00448 * 5.91070 * 16 15 14
18 18 H 1.07997 * 119.99809 * 5.40777 * 17 16 15
19 19 C 1.38624 * 119.99936 * 185.41236 * 17 16 15
20 20 N 1.31569 * 120.00486 * 359.97438 * 19 17 16
21 21 Si 1.86806 * 119.99963 * 179.97438 * 19 17 16
22 22 H 1.48502 * 109.46940 * 59.99931 * 21 19 17
23 23 H 1.48499 * 109.47001 * 179.97438 * 21 19 17
24 24 H 1.48501 * 109.47203 * 300.00097 * 21 19 17
25 25 C 1.38909 * 120.00130 * 0.25333 * 15 14 13
26 26 C 1.38002 * 120.00521 * 359.44656 * 25 15 14
27 27 C 1.34271 * 125.74961 * 90.00711 * 5 4 3
28 28 C 1.50697 * 126.29676 * 359.96999 * 27 5 4
29 29 H 1.08996 * 109.47232 * 60.00650 * 1 2 3
30 30 H 1.09007 * 109.46488 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.47034 * 299.99548 * 1 2 3
32 32 H 1.09002 * 109.47310 * 60.00422 * 3 2 1
33 33 H 1.08999 * 109.46996 * 299.99522 * 3 2 1
34 34 H 1.09002 * 109.46731 * 60.00228 * 4 3 2
35 35 H 1.09000 * 109.46918 * 300.00130 * 4 3 2
36 36 H 1.08001 * 125.99164 * 180.30112 * 7 6 5
37 37 H 0.96994 * 120.00062 * 354.78599 * 11 9 8
38 38 H 1.07993 * 120.00413 * 359.97438 * 13 12 11
39 39 H 1.07995 * 119.99523 * 180.02562 * 14 13 12
40 40 H 0.96995 * 120.00734 * 180.02562 * 20 19 17
41 41 H 1.07999 * 119.99248 * 179.70585 * 25 15 14
42 42 H 1.08002 * 119.99878 * 180.25488 * 26 25 15
43 43 H 1.09000 * 109.47501 * 269.98259 * 28 27 5
44 44 H 1.09002 * 109.47020 * 29.98268 * 28 27 5
45 45 H 1.08993 * 109.47254 * 149.97932 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0101 1.3056 0.0000
4 6 3.5355 1.1848 0.0006
5 7 4.1312 2.5232 0.0000
6 7 4.4645 3.2693 -1.1358
7 6 4.9668 4.4124 -0.7582
8 6 4.9834 4.4373 0.6545
9 6 5.4728 5.5375 1.5047
10 8 5.4270 5.4368 2.7158
11 7 5.9713 6.6551 0.9398
12 6 6.3344 7.7426 1.7423
13 6 7.4098 8.5444 1.3804
14 6 7.7681 9.6165 2.1722
15 6 7.0541 9.8935 3.3311
16 8 7.4071 10.9479 4.1101
17 6 8.3785 11.7569 3.6418
18 1 8.7770 11.6039 2.6497
19 6 8.8659 12.7851 4.4336
20 7 8.3802 12.9718 5.6420
21 14 10.2125 13.9056 3.7849
22 1 9.7361 14.5928 2.5576
23 1 10.5546 14.9171 4.8169
24 1 11.4167 13.0980 3.4641
25 6 5.9825 9.0883 3.6959
26 6 5.6201 8.0199 2.9011
27 6 4.4499 3.2405 1.0894
28 6 4.2601 2.8172 2.5232
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3632 -1.0278 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.6885 1.8464 0.8900
33 1 1.6885 1.8464 -0.8900
34 1 3.8574 0.6438 -0.8892
35 1 3.8567 0.6441 0.8909
36 1 5.3118 5.2007 -1.4109
37 1 6.0782 6.7057 -0.0229
38 1 7.9657 8.3284 0.4801
39 1 8.6037 10.2400 1.8907
40 1 8.7210 13.6914 6.1959
41 1 5.4305 9.3010 4.5994
42 1 4.7844 7.3964 3.1827
43 1 3.2757 3.1337 2.8682
44 1 4.3389 1.7324 2.5952
45 1 5.0282 3.2792 3.1432
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001646056749.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:19:22
Heat of formation + Delta-G solvation = 0.896414 kcal
Electronic energy + Delta-G solvation = -28442.578713 eV
Core-core repulsion = 24235.249188 eV
Total energy + Delta-G solvation = -4207.329525 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.82021 -39.77675 -38.60893 -38.41735 -36.39970 -34.60586 -33.79850 -32.36387
-32.15407 -30.17795 -29.84999 -28.28032 -27.13629 -26.77190 -25.31034 -24.01849
-22.98778 -22.17356 -21.38862 -20.21003 -19.75562 -18.10701 -17.69846 -17.32526
-17.01539 -16.73598 -16.32249 -16.12951 -15.58134 -15.19540 -14.79006 -14.59940
-14.54180 -14.13764 -14.08548 -13.81159 -13.51514 -13.38125 -13.29793 -13.17650
-12.75479 -12.61898 -12.52341 -12.39218 -12.10909 -11.91228 -11.77566 -11.53958
-11.51814 -11.12181 -11.01825 -10.66123 -10.43404 -10.35236 -9.80796 -9.71307
-9.57158 -9.20166 -8.90403 -8.66141 -8.16580 -6.86804 -6.41513 -3.99501
1.20732 1.76388 1.88805 2.22469 2.36888 3.15183 3.15773 3.19064
3.23755 3.43378 3.52814 3.99291 4.01223 4.25547 4.30216 4.45290
4.60162 4.62374 4.69625 4.76878 4.78568 4.91881 5.01042 5.09670
5.12033 5.13821 5.24824 5.27703 5.35317 5.58133 5.62815 5.80084
5.83755 6.09381 6.19437 6.28013 6.33852 6.37700 6.52484 6.84027
6.89758 7.04158 7.19691 7.22829 7.26052 7.44813 7.79822 7.83519
8.02797 8.48044 9.03788 9.74831 10.76454
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.034036 B = 0.001695 C = 0.001647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 822.465556 B =16518.952280 C =16999.425497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.389 6.389
3 C 0.046 3.954
4 C 0.132 3.868
5 N -0.362 5.362
6 N -0.296 5.296
7 C 0.086 3.914
8 C -0.291 4.291
9 C 0.588 3.412
10 O -0.533 6.533
11 N -0.657 5.657
12 C 0.042 3.958
13 C -0.091 4.091
14 C -0.218 4.218
15 C 0.146 3.854
16 O -0.177 6.177
17 C -0.391 4.391
18 H 0.091 0.909
19 C 0.039 3.961
20 N -0.862 5.862
21 Si 0.940 3.060
22 H -0.270 1.270
23 H -0.278 1.278
24 H -0.270 1.270
25 C -0.177 4.177
26 C -0.067 4.067
27 C 0.161 3.839
28 C -0.103 4.103
29 H 0.044 0.956
30 H 0.091 0.909
31 H 0.045 0.955
32 H 0.058 0.942
33 H 0.061 0.939
34 H 0.108 0.892
35 H 0.106 0.894
36 H 0.191 0.809
37 H 0.400 0.600
38 H 0.110 0.890
39 H 0.131 0.869
40 H 0.270 0.730
41 H 0.120 0.880
42 H 0.125 0.875
43 H 0.087 0.913
44 H 0.071 0.929
45 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.808 -23.193 -13.116 29.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.307 6.307
3 C -0.032 4.032
4 C 0.011 3.989
5 N -0.143 5.143
6 N -0.115 5.115
7 C -0.102 4.102
8 C -0.305 4.305
9 C 0.376 3.624
10 O -0.411 6.411
11 N -0.300 5.300
12 C -0.050 4.050
13 C -0.112 4.112
14 C -0.238 4.238
15 C 0.092 3.908
16 O -0.081 6.081
17 C -0.467 4.467
18 H 0.108 0.892
19 C -0.165 4.165
20 N -0.497 5.497
21 Si 0.765 3.235
22 H -0.195 1.195
23 H -0.203 1.203
24 H -0.195 1.195
25 C -0.197 4.197
26 C -0.087 4.087
27 C 0.030 3.970
28 C -0.161 4.161
29 H 0.063 0.937
30 H 0.110 0.890
31 H 0.064 0.936
32 H 0.076 0.924
33 H 0.080 0.920
34 H 0.127 0.873
35 H 0.124 0.876
36 H 0.208 0.792
37 H 0.234 0.766
38 H 0.129 0.871
39 H 0.148 0.852
40 H 0.080 0.920
41 H 0.138 0.862
42 H 0.143 0.857
43 H 0.106 0.894
44 H 0.089 0.911
45 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -12.189 -24.087 -12.854 29.900
hybrid contribution 0.807 1.318 -0.397 1.595
sum -11.382 -22.769 -13.250 28.698
Atomic orbital electron populations
1.22807 0.79825 1.03244 1.00469 1.87791 1.20660 1.26627 1.95590
1.22797 0.92891 0.85643 1.01839 1.21433 0.91900 0.79294 1.06290
1.48240 1.47699 1.14767 1.03620 1.77201 1.21477 1.05571 1.07216
1.24077 0.96718 0.95534 0.93910 1.20018 1.18901 0.98129 0.93471
1.17168 0.77365 0.80783 0.87040 1.90751 1.56225 1.80209 1.13910
1.42965 1.63881 1.13429 1.09749 1.17205 0.99364 0.91988 0.96484
1.20479 0.94871 0.96044 0.99764 1.20971 1.04024 1.01141 0.97690
1.19421 0.92975 0.88125 0.90309 1.84000 1.50538 1.31645 1.41888
1.21251 1.15530 1.09106 1.00862 0.89177 1.25272 0.98416 0.97590
0.95239 1.70032 1.40820 1.30715 1.08174 0.85797 0.80004 0.79259
0.78449 1.19539 1.20324 1.19538 1.20117 0.99557 0.97671 1.02391
1.20603 0.98614 0.95763 0.93693 1.21568 0.93701 0.90689 0.91086
1.20748 1.05453 1.01561 0.88299 0.93705 0.89050 0.93646 0.92409
0.92046 0.87339 0.87580 0.79185 0.76595 0.87148 0.85160 0.92003
0.86175 0.85739 0.89421 0.91066 0.87072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.15 11.01 101.05 1.11 1.26 16
2 O -0.39 -2.71 10.70 -35.23 -0.38 -3.09 16
3 C 0.05 0.30 6.26 37.16 0.23 0.53 16
4 C 0.13 0.87 6.58 -4.04 -0.03 0.85 16
5 N -0.36 -3.42 3.58 -56.59 -0.20 -3.62 16
6 N -0.30 -3.19 12.50 30.86 0.39 -2.80 16
7 C 0.09 0.85 11.51 -16.97 -0.20 0.66 16
8 C -0.29 -3.44 6.13 -105.07 -0.64 -4.09 16
9 C 0.59 8.59 7.55 -12.53 -0.09 8.50 16
10 O -0.53 -9.40 12.54 5.27 0.07 -9.33 16
11 N -0.66 -9.15 5.33 -10.80 -0.06 -9.21 16
12 C 0.04 0.75 6.28 -83.64 -0.52 0.22 16
13 C -0.09 -1.64 9.96 -39.41 -0.39 -2.04 16
14 C -0.22 -4.69 9.13 -39.42 -0.36 -5.05 16
15 C 0.15 3.55 6.65 -39.08 -0.26 3.29 16
16 O -0.18 -5.08 9.75 0.03 0.00 -5.08 16
17 C -0.39 -10.90 9.44 30.87 0.29 -10.61 16
18 H 0.09 2.30 5.29 -52.49 -0.28 2.02 16
19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16
20 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16
21 Si 0.94 20.46 29.55 -169.99 -5.02 15.43 16
22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16
24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
25 C -0.18 -3.90 9.98 -39.42 -0.39 -4.30 16
26 C -0.07 -1.31 8.64 -39.41 -0.34 -1.65 16
27 C 0.16 1.69 7.01 -81.59 -0.57 1.11 16
28 C -0.10 -0.88 9.57 36.00 0.34 -0.54 16
29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16
30 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16
31 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16
32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
34 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.11 0.52 7.02 -51.93 -0.36 0.16 16
36 H 0.19 1.24 7.51 -52.49 -0.39 0.85 16
37 H 0.40 4.09 7.79 -40.82 -0.32 3.77 16
38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16
39 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16
40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16
41 H 0.12 2.56 8.06 -52.49 -0.42 2.13 16
42 H 0.12 2.36 6.43 -52.49 -0.34 2.02 16
43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
44 H 0.07 0.43 7.05 -51.93 -0.37 0.06 16
45 H 0.11 1.21 6.50 -51.93 -0.34 0.87 16
LS Contribution 384.85 15.07 5.80 5.80
Total: -1.00 -34.94 384.85 -6.20 -41.14
By element:
Atomic # 1 Polarization: 11.87 SS G_CDS: -5.64 Total: 6.24 kcal
Atomic # 6 Polarization: -8.96 SS G_CDS: -1.92 Total: -10.87 kcal
Atomic # 7 Polarization: -41.12 SS G_CDS: 0.88 Total: -40.24 kcal
Atomic # 8 Polarization: -17.19 SS G_CDS: -0.31 Total: -17.50 kcal
Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -34.94 -6.20 -41.14 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646056749.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.037 kcal
(2) G-P(sol) polarization free energy of solvation -34.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.896 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds