Wall clock time and date at job start Wed Apr 1 2020 03:19:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42903 * 113.99340 * 2 1
4 4 C 1.53010 * 109.46766 * 179.97438 * 3 2 1
5 5 N 1.46497 * 109.46814 * 179.97438 * 4 3 2
6 6 N 1.39926 * 125.75537 * 269.97586 * 5 4 3
7 7 C 1.30452 * 108.90258 * 179.74121 * 6 5 4
8 8 C 1.41302 * 108.02031 * 0.44108 * 7 6 5
9 9 C 1.47404 * 126.41662 * 179.82289 * 8 7 6
10 10 O 1.21610 * 120.00430 * 179.68955 * 9 8 7
11 11 N 1.34783 * 119.99698 * 359.68699 * 9 8 7
12 12 C 1.39943 * 119.99862 * 174.78557 * 11 9 8
13 13 C 1.38934 * 120.00163 * 146.29970 * 12 11 9
14 14 C 1.38002 * 119.99348 * 180.02562 * 13 12 11
15 15 C 1.38912 * 120.00560 * 0.02562 * 14 13 12
16 16 O 1.35775 * 119.99403 * 179.97438 * 15 14 13
17 17 C 1.34811 * 117.00448 * 5.91070 * 16 15 14
18 18 H 1.07997 * 119.99809 * 5.40777 * 17 16 15
19 19 C 1.38624 * 119.99936 * 185.41236 * 17 16 15
20 20 N 1.31569 * 120.00486 * 359.97438 * 19 17 16
21 21 Si 1.86806 * 119.99963 * 179.97438 * 19 17 16
22 22 H 1.48502 * 109.46940 * 59.99931 * 21 19 17
23 23 H 1.48499 * 109.47001 * 179.97438 * 21 19 17
24 24 H 1.48501 * 109.47203 * 300.00097 * 21 19 17
25 25 C 1.38909 * 120.00130 * 0.25333 * 15 14 13
26 26 C 1.38002 * 120.00521 * 359.44656 * 25 15 14
27 27 C 1.34271 * 125.74961 * 90.00711 * 5 4 3
28 28 C 1.50697 * 126.29676 * 359.96999 * 27 5 4
29 29 H 1.08996 * 109.47232 * 60.00650 * 1 2 3
30 30 H 1.09007 * 109.46488 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.47034 * 299.99548 * 1 2 3
32 32 H 1.09002 * 109.47310 * 60.00422 * 3 2 1
33 33 H 1.08999 * 109.46996 * 299.99522 * 3 2 1
34 34 H 1.09002 * 109.46731 * 60.00228 * 4 3 2
35 35 H 1.09000 * 109.46918 * 300.00130 * 4 3 2
36 36 H 1.08001 * 125.99164 * 180.30112 * 7 6 5
37 37 H 0.96994 * 120.00062 * 354.78599 * 11 9 8
38 38 H 1.07993 * 120.00413 * 359.97438 * 13 12 11
39 39 H 1.07995 * 119.99523 * 180.02562 * 14 13 12
40 40 H 0.96995 * 120.00734 * 180.02562 * 20 19 17
41 41 H 1.07999 * 119.99248 * 179.70585 * 25 15 14
42 42 H 1.08002 * 119.99878 * 180.25488 * 26 25 15
43 43 H 1.09000 * 109.47501 * 269.98259 * 28 27 5
44 44 H 1.09002 * 109.47020 * 29.98268 * 28 27 5
45 45 H 1.08993 * 109.47254 * 149.97932 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0101 1.3056 0.0000
4 6 3.5355 1.1848 0.0006
5 7 4.1312 2.5232 0.0000
6 7 4.4645 3.2693 -1.1358
7 6 4.9668 4.4124 -0.7582
8 6 4.9834 4.4373 0.6545
9 6 5.4728 5.5375 1.5047
10 8 5.4270 5.4368 2.7158
11 7 5.9713 6.6551 0.9398
12 6 6.3344 7.7426 1.7423
13 6 7.4098 8.5444 1.3804
14 6 7.7681 9.6165 2.1722
15 6 7.0541 9.8935 3.3311
16 8 7.4071 10.9479 4.1101
17 6 8.3785 11.7569 3.6418
18 1 8.7770 11.6039 2.6497
19 6 8.8659 12.7851 4.4336
20 7 8.3802 12.9718 5.6420
21 14 10.2125 13.9056 3.7849
22 1 9.7361 14.5928 2.5576
23 1 10.5546 14.9171 4.8169
24 1 11.4167 13.0980 3.4641
25 6 5.9825 9.0883 3.6959
26 6 5.6201 8.0199 2.9011
27 6 4.4499 3.2405 1.0894
28 6 4.2601 2.8172 2.5232
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3632 -1.0278 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.6885 1.8464 0.8900
33 1 1.6885 1.8464 -0.8900
34 1 3.8574 0.6438 -0.8892
35 1 3.8567 0.6441 0.8909
36 1 5.3118 5.2007 -1.4109
37 1 6.0782 6.7057 -0.0229
38 1 7.9657 8.3284 0.4801
39 1 8.6037 10.2400 1.8907
40 1 8.7210 13.6914 6.1959
41 1 5.4305 9.3010 4.5994
42 1 4.7844 7.3964 3.1827
43 1 3.2757 3.1337 2.8682
44 1 4.3389 1.7324 2.5952
45 1 5.0282 3.2792 3.1432
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001646056749.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:19:21
Heat of formation + Delta-G solvation = -23.527396 kcal
Electronic energy + Delta-G solvation = -28443.637808 eV
Core-core repulsion = 24235.249188 eV
Total energy + Delta-G solvation = -4208.388620 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.62896 -41.19045 -40.11861 -39.01138 -38.03250 -35.53858 -34.96955 -34.10546
-33.12994 -31.83023 -30.68642 -29.43878 -28.19576 -27.30893 -27.13609 -24.71271
-24.08578 -23.71127 -22.69067 -21.31953 -20.71367 -19.81163 -18.88983 -18.76395
-18.04839 -17.49041 -17.21444 -16.84959 -16.51738 -16.31991 -16.15540 -15.90658
-15.63802 -15.48013 -15.30580 -15.16722 -14.74114 -14.50160 -14.35294 -14.10884
-14.06768 -13.82751 -13.53473 -13.29914 -13.20525 -13.14060 -13.03299 -12.67226
-12.58182 -12.37118 -12.33217 -12.12752 -11.90705 -11.35261 -11.05740 -10.80899
-10.80723 -10.51823 -10.48935 -9.80108 -9.75451 -8.53316 -8.42310 -6.09394
0.30136 0.57083 0.67208 1.10841 1.16768 1.38782 1.49713 1.55131
2.21114 2.26409 2.40253 2.77643 2.88727 3.21104 3.39392 3.54760
3.55821 3.79963 3.82156 3.92690 4.06838 4.12415 4.15053 4.18372
4.39254 4.43827 4.46027 4.53894 4.54344 4.60342 4.63545 4.68997
4.79446 4.82509 4.93216 5.09700 5.11459 5.22656 5.35556 5.36466
5.52384 5.61641 5.72291 5.75971 5.99830 6.05729 6.21406 6.44877
6.65438 7.01967 7.31781 7.83442 8.80858
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.034036 B = 0.001695 C = 0.001647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 822.465556 B =16518.952280 C =16999.425497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.403 6.403
3 C 0.052 3.948
4 C 0.128 3.872
5 N -0.357 5.357
6 N -0.315 5.315
7 C 0.095 3.905
8 C -0.315 4.315
9 C 0.590 3.410
10 O -0.567 6.567
11 N -0.647 5.647
12 C 0.070 3.930
13 C -0.082 4.082
14 C -0.219 4.219
15 C 0.105 3.895
16 O -0.232 6.232
17 C -0.412 4.412
18 H 0.106 0.894
19 C -0.025 4.025
20 N -0.922 5.922
21 Si 1.019 2.981
22 H -0.256 1.256
23 H -0.275 1.275
24 H -0.256 1.256
25 C -0.188 4.188
26 C -0.072 4.072
27 C 0.164 3.836
28 C -0.101 4.101
29 H 0.048 0.952
30 H 0.104 0.896
31 H 0.051 0.949
32 H 0.060 0.940
33 H 0.053 0.947
34 H 0.113 0.887
35 H 0.126 0.874
36 H 0.222 0.778
37 H 0.422 0.578
38 H 0.158 0.842
39 H 0.131 0.869
40 H 0.271 0.729
41 H 0.112 0.888
42 H 0.131 0.869
43 H 0.096 0.904
44 H 0.099 0.901
45 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.618 -25.405 -16.269 32.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.321 6.321
3 C -0.026 4.026
4 C 0.007 3.993
5 N -0.137 5.137
6 N -0.133 5.133
7 C -0.093 4.093
8 C -0.329 4.329
9 C 0.381 3.619
10 O -0.447 6.447
11 N -0.292 5.292
12 C -0.023 4.023
13 C -0.102 4.102
14 C -0.239 4.239
15 C 0.055 3.945
16 O -0.139 6.139
17 C -0.488 4.488
18 H 0.123 0.877
19 C -0.222 4.222
20 N -0.561 5.561
21 Si 0.838 3.162
22 H -0.180 1.180
23 H -0.200 1.200
24 H -0.181 1.181
25 C -0.208 4.208
26 C -0.092 4.092
27 C 0.031 3.969
28 C -0.159 4.159
29 H 0.067 0.933
30 H 0.123 0.877
31 H 0.070 0.930
32 H 0.079 0.921
33 H 0.071 0.929
34 H 0.131 0.869
35 H 0.144 0.856
36 H 0.239 0.761
37 H 0.261 0.739
38 H 0.176 0.824
39 H 0.149 0.851
40 H 0.080 0.920
41 H 0.130 0.870
42 H 0.149 0.851
43 H 0.114 0.886
44 H 0.118 0.882
45 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -12.036 -26.380 -16.096 33.164
hybrid contribution 0.515 1.594 0.433 1.730
sum -11.521 -24.787 -15.663 31.503
Atomic orbital electron populations
1.22983 0.78691 1.04339 1.00955 1.87766 1.21950 1.26746 1.95660
1.22697 0.92747 0.85571 1.01558 1.21674 0.91954 0.78097 1.07549
1.48418 1.47027 1.15279 1.02992 1.77194 1.22106 1.06060 1.07981
1.24547 0.95567 0.95885 0.93321 1.19840 1.21022 0.97957 0.94128
1.17548 0.76328 0.81172 0.86864 1.90750 1.57408 1.80917 1.15628
1.42869 1.63592 1.12171 1.10618 1.17323 0.97720 0.91888 0.95400
1.20834 0.94573 0.94228 1.00519 1.21122 1.03646 1.02082 0.97024
1.19878 0.94533 0.88464 0.91640 1.83962 1.52229 1.33741 1.43976
1.21810 1.15547 1.09640 1.01807 0.87703 1.26604 1.01051 0.99151
0.95379 1.70195 1.43455 1.32260 1.10162 0.84638 0.76571 0.76845
0.78097 1.18006 1.19976 1.18071 1.20241 0.99343 0.98353 1.02816
1.20720 0.99132 0.94989 0.94323 1.21833 0.92617 0.90439 0.91975
1.20768 1.05001 1.03274 0.86865 0.93348 0.87748 0.93042 0.92143
0.92885 0.86860 0.85617 0.76129 0.73928 0.82448 0.85120 0.91963
0.86963 0.85075 0.88608 0.88206 0.89356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 11.01 113.37 1.25 1.44 16
2 O -0.40 -4.83 10.70 -148.98 -1.59 -6.42 16
3 C 0.05 0.57 6.26 71.99 0.45 1.02 16
4 C 0.13 1.36 6.58 86.38 0.57 1.93 16
5 N -0.36 -5.82 3.58 -332.97 -1.19 -7.01 16
6 N -0.32 -5.90 12.50 -56.26 -0.70 -6.61 16
7 C 0.09 1.58 11.51 85.65 0.99 2.57 16
8 C -0.31 -6.67 6.13 -20.15 -0.12 -6.79 16
9 C 0.59 15.94 7.55 86.66 0.65 16.60 16
10 O -0.57 -19.38 12.54 -4.06 -0.05 -19.43 16
11 N -0.65 -15.92 5.33 -306.32 -1.63 -17.55 16
12 C 0.07 2.34 6.28 38.18 0.24 2.58 16
13 C -0.08 -2.70 9.96 22.38 0.22 -2.48 16
14 C -0.22 -9.31 9.13 22.38 0.20 -9.10 16
15 C 0.11 5.33 6.65 22.59 0.15 5.48 16
16 O -0.23 -14.13 9.75 -22.82 -0.22 -14.36 16
17 C -0.41 -23.88 9.44 67.91 0.64 -23.24 16
18 H 0.11 5.46 5.29 -2.91 -0.02 5.44 16
19 C -0.02 -1.40 5.49 84.82 0.47 -0.93 16
20 N -0.92 -57.09 13.67 21.61 0.30 -56.80 16
21 Si 1.02 42.60 29.55 68.60 2.03 44.63 16
22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16
23 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16
24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16
25 C -0.19 -8.57 9.98 22.37 0.22 -8.35 16
26 C -0.07 -2.78 8.64 22.38 0.19 -2.59 16
27 C 0.16 3.06 7.01 42.14 0.30 3.36 16
28 C -0.10 -1.55 9.57 71.24 0.68 -0.86 16
29 H 0.05 0.31 8.14 -2.39 -0.02 0.30 16
30 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16
31 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16
32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16
35 H 0.13 0.84 7.02 -2.39 -0.02 0.83 16
36 H 0.22 1.92 7.51 -2.91 -0.02 1.90 16
37 H 0.42 6.75 7.79 -92.71 -0.72 6.02 16
38 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16
39 H 0.13 5.49 5.71 -2.91 -0.02 5.47 16
40 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16
41 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16
42 H 0.13 4.93 6.43 -2.91 -0.02 4.91 16
43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16
44 H 0.10 0.91 7.05 -2.39 -0.02 0.89 16
45 H 0.09 1.84 6.50 -2.39 -0.02 1.82 16
Total: -1.00 -80.77 384.85 4.35 -76.42
By element:
Atomic # 1 Polarization: 26.18 SS G_CDS: 0.32 Total: 26.50 kcal
Atomic # 6 Polarization: -26.47 SS G_CDS: 7.10 Total: -19.37 kcal
Atomic # 7 Polarization: -84.74 SS G_CDS: -3.23 Total: -87.97 kcal
Atomic # 8 Polarization: -38.34 SS G_CDS: -1.87 Total: -40.21 kcal
Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal
Total: -80.77 4.35 -76.42 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646056749.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.895 kcal
(2) G-P(sol) polarization free energy of solvation -80.775 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.879 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.423 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds