Wall clock time and date at job start Wed Apr 1 2020 03:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30840 * 125.89853 * 2 1 4 4 N 1.40079 * 108.20638 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03628 * 179.74002 * 4 3 2 6 6 C 1.34942 * 107.92828 * 359.97438 * 4 3 2 7 7 C 1.50704 * 126.12962 * 179.97438 * 6 4 3 8 8 C 1.35315 * 107.74403 * 0.02562 * 6 4 3 9 9 C 1.50709 * 126.04153 * 180.02562 * 8 6 4 10 10 H 1.09004 * 109.46424 * 16.00035 * 9 8 6 11 11 O 1.42897 * 109.47176 * 135.99475 * 9 8 6 12 12 C 1.52998 * 109.47305 * 255.99700 * 9 8 6 13 13 N 1.46497 * 109.46904 * 179.97438 * 12 9 8 14 14 S 1.65604 * 119.99815 * 165.00388 * 13 12 9 15 15 O 1.42093 * 104.27662 * 181.06929 * 14 13 12 16 16 O 1.42101 * 104.27429 * 308.92681 * 14 13 12 17 17 C 1.81398 * 104.45164 * 64.99771 * 14 13 12 18 18 C 1.52996 * 109.47425 * 180.02562 * 17 14 13 19 19 C 1.53000 * 109.47521 * 180.02562 * 18 17 14 20 20 C 1.50695 * 109.47113 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00559 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99856 * 180.02562 * 20 19 18 23 23 N 1.31520 * 120.00391 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00115 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47227 * 90.00106 * 24 22 20 26 26 H 1.48501 * 109.47495 * 210.00031 * 24 22 20 27 27 H 1.48499 * 109.47206 * 329.99918 * 24 22 20 28 28 H 1.08995 * 109.47548 * 96.60768 * 1 2 3 29 29 H 1.09010 * 109.46953 * 216.60677 * 1 2 3 30 30 H 1.09000 * 109.47419 * 336.60123 * 1 2 3 31 31 H 1.08999 * 109.46815 * 90.02415 * 5 4 3 32 32 H 1.08997 * 109.46839 * 210.02454 * 5 4 3 33 33 H 1.09001 * 109.47147 * 330.02354 * 5 4 3 34 34 H 1.09003 * 109.46689 * 90.03012 * 7 6 4 35 35 H 1.08999 * 109.47267 * 210.03025 * 7 6 4 36 36 H 1.08995 * 109.47079 * 330.03021 * 7 6 4 37 37 H 0.96704 * 113.99977 * 74.31820 * 11 9 8 38 38 H 1.08998 * 109.47032 * 300.00209 * 12 9 8 39 39 H 1.09007 * 109.46809 * 60.00116 * 12 9 8 40 40 H 0.96992 * 120.00272 * 345.00021 * 13 12 9 41 41 H 1.09008 * 109.47094 * 300.00572 * 17 14 13 42 42 H 1.08994 * 109.47361 * 59.99992 * 17 14 13 43 43 H 1.09007 * 109.46743 * 300.00457 * 18 17 14 44 44 H 1.09003 * 109.47175 * 59.99361 * 18 17 14 45 45 H 1.08998 * 109.46621 * 299.99824 * 19 18 17 46 46 H 1.08997 * 109.46666 * 59.99668 * 19 18 17 47 47 H 0.96990 * 120.00203 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5009 -0.0062 6 6 3.6142 -0.7152 -0.0004 7 6 4.8351 -1.5988 -0.0014 8 6 2.3272 -1.1329 -0.0002 9 6 1.8599 -2.5658 0.0006 10 1 2.6865 -3.2172 0.2843 11 8 0.7909 -2.7176 0.9365 12 6 1.3701 -2.9433 -1.3989 13 7 0.9165 -4.3363 -1.3981 14 16 -0.0011 -4.9089 -2.6522 15 8 -0.2684 -6.2599 -2.3024 16 8 -1.0536 -3.9623 -2.7770 17 6 1.1000 -4.8300 -4.0916 18 6 0.3584 -5.3385 -5.3295 19 6 1.2873 -5.2726 -6.5435 20 6 0.5570 -5.7740 -7.7626 21 1 -0.4671 -6.1068 -7.6798 22 6 1.1966 -5.8088 -8.9835 23 7 0.5595 -6.2469 -10.0474 24 14 2.9681 -5.2338 -9.1267 25 1 3.8814 -6.3817 -8.8950 26 1 3.2013 -4.6822 -10.4856 27 1 3.2301 -4.1805 -8.1133 28 1 -0.3634 -0.1182 -1.0208 29 1 -0.3633 -0.8250 0.6129 30 1 -0.3634 0.9431 0.4081 31 1 5.0847 1.7196 1.0201 32 1 5.6082 0.9964 -0.5198 33 1 4.5552 2.4315 -0.5230 34 1 5.1300 -1.8120 1.0261 35 1 4.6074 -2.5326 -0.5153 36 1 5.6508 -1.0907 -0.5156 37 1 -0.0498 -2.3448 0.6374 38 1 0.5436 -2.2917 -1.6825 39 1 2.1856 -2.8275 -2.1128 40 1 1.1536 -4.9231 -0.6632 41 1 1.4126 -3.7984 -4.2539 42 1 1.9773 -5.4515 -3.9125 43 1 0.0455 -6.3700 -5.1674 44 1 -0.5188 -4.7167 -5.5085 45 1 1.6005 -4.2412 -6.7057 46 1 2.1642 -5.8946 -6.3641 47 1 1.0096 -6.2717 -10.9062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666121810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:51 Heat of formation + Delta-G solvation = -92.755434 kcal Electronic energy + Delta-G solvation = -28479.377795 eV Core-core repulsion = 24403.431173 eV Total energy + Delta-G solvation = -4075.946622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.44606 -38.84428 -38.11056 -37.00697 -36.48695 -35.43654 -34.88478 -34.23669 -33.31057 -30.44718 -30.13853 -29.75469 -27.40015 -26.17630 -25.37687 -23.59201 -22.24526 -21.01961 -20.54389 -20.21086 -18.97180 -18.65602 -18.16871 -17.45267 -17.13932 -16.80631 -16.68594 -16.29235 -16.20835 -15.93700 -15.36246 -15.30599 -14.87173 -14.74953 -14.37617 -14.11955 -13.97223 -13.90043 -13.71445 -13.62521 -13.53711 -13.28028 -13.20816 -13.16037 -13.08304 -13.02244 -12.82923 -12.70959 -12.68393 -12.53362 -12.19644 -11.83785 -11.63267 -11.58680 -11.40367 -11.29239 -11.04224 -10.76955 -10.34766 -10.02790 -9.30286 -8.29316 -6.35336 -0.70624 0.87132 1.36881 1.39856 1.51272 1.58260 1.62849 1.87031 2.36876 2.80884 3.05870 3.27060 3.43605 3.62811 3.69938 3.72045 3.82631 3.95975 4.11565 4.15583 4.25119 4.29544 4.35868 4.37740 4.46165 4.52959 4.62143 4.64666 4.71403 4.74551 4.76322 4.86506 4.93462 4.96998 4.99054 5.10629 5.21472 5.26962 5.35797 5.47406 5.63467 5.69356 6.12438 6.16008 6.26070 6.72608 6.73280 6.76640 7.29344 8.87795 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.002731 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.007690 B =10251.025832 C =11756.483153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.077 3.923 3 N -0.340 5.340 4 N -0.380 5.380 5 C 0.091 3.909 6 C 0.104 3.896 7 C -0.098 4.098 8 C -0.292 4.292 9 C 0.194 3.806 10 H 0.126 0.874 11 O -0.565 6.565 12 C 0.076 3.924 13 N -1.102 6.102 14 S 2.627 3.373 15 O -0.994 6.994 16 O -0.991 6.991 17 C -0.612 4.612 18 C -0.105 4.105 19 C -0.005 4.005 20 C -0.544 4.544 21 H 0.029 0.971 22 C -0.001 4.001 23 N -0.953 5.953 24 Si 0.956 3.044 25 H -0.264 1.264 26 H -0.287 1.287 27 H -0.237 1.237 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.380 0.620 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.428 0.572 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.032 0.968 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.650 14.259 26.559 33.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 N -0.163 5.163 4 N -0.162 5.162 5 C -0.049 4.049 6 C -0.025 4.025 7 C -0.156 4.156 8 C -0.304 4.304 9 C 0.133 3.867 10 H 0.144 0.856 11 O -0.374 6.374 12 C -0.050 4.050 13 N -0.864 5.864 14 S 2.722 3.278 15 O -0.984 6.984 16 O -0.981 6.981 17 C -0.743 4.743 18 C -0.144 4.144 19 C -0.043 4.043 20 C -0.582 4.582 21 H 0.047 0.953 22 C -0.197 4.197 23 N -0.594 5.594 24 Si 0.778 3.222 25 H -0.189 1.189 26 H -0.213 1.213 27 H -0.160 1.160 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.265 0.735 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.327 15.176 26.681 33.463 hybrid contribution 0.364 -0.373 -1.062 1.183 sum 13.692 14.804 25.619 32.603 Atomic orbital electron populations 1.20499 0.85921 1.04253 1.03932 1.22513 0.97691 0.90453 0.98234 1.77284 0.87619 1.23617 1.27734 1.48686 1.05657 1.05000 1.56816 1.22165 0.83288 0.94913 1.04512 1.21449 0.97706 0.84778 0.98584 1.20723 0.91758 0.98320 1.04837 1.20364 0.92225 0.96794 1.21051 1.20139 0.90017 0.90045 0.86549 0.85622 1.86605 1.21919 1.82842 1.46041 1.22284 1.01416 0.81147 1.00200 1.55171 1.73660 1.19457 1.38151 1.04271 0.75220 0.72580 0.75724 1.93544 1.84544 1.37742 1.82615 1.93533 1.53819 1.63921 1.86841 1.30520 1.16331 1.12842 1.14563 1.21180 0.98881 1.00911 0.93449 1.19503 0.95543 0.97405 0.91889 1.21579 0.99669 1.42984 0.94001 0.95272 1.26136 1.03761 0.94731 0.95084 1.70088 1.39859 1.48785 1.00664 0.85579 0.78499 0.80018 0.78076 1.18863 1.21257 1.16050 0.89503 0.88861 0.90539 0.89618 0.86736 0.89441 0.88667 0.88047 0.89087 0.76795 0.90277 0.88393 0.73520 0.82891 0.82348 0.91931 0.91964 0.94971 0.94985 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.97 71.23 0.71 -0.64 16 2 C 0.08 1.53 7.16 43.10 0.31 1.84 16 3 N -0.34 -7.65 12.58 -47.39 -0.60 -8.25 16 4 N -0.38 -6.24 4.01 -356.03 -1.43 -7.67 16 5 C 0.09 0.70 11.28 127.77 1.44 2.14 16 6 C 0.10 1.44 6.93 41.41 0.29 1.73 16 7 C -0.10 -0.51 9.67 71.24 0.69 0.18 16 8 C -0.29 -4.82 5.08 -20.14 -0.10 -4.92 16 9 C 0.19 2.62 3.24 29.85 0.10 2.71 16 10 H 0.13 1.20 7.18 -2.39 -0.02 1.19 16 11 O -0.56 -9.26 12.84 -148.98 -1.91 -11.18 16 12 C 0.08 1.06 5.64 86.38 0.49 1.55 16 13 N -1.10 -17.75 5.75 -187.49 -1.08 -18.83 16 14 S 2.63 66.25 5.46 -56.49 -0.31 65.94 16 15 O -0.99 -32.20 18.08 -127.65 -2.31 -34.50 16 16 O -0.99 -31.48 17.50 -127.65 -2.23 -33.71 16 17 C -0.61 -14.93 6.07 71.98 0.44 -14.49 16 18 C -0.10 -3.91 5.16 30.59 0.16 -3.75 16 19 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 20 C -0.54 -31.36 9.66 25.60 0.25 -31.11 16 21 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 22 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 23 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 24 Si 0.96 42.65 27.47 68.60 1.88 44.53 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.14 5.05 -2.38 -0.01 1.12 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.22 7.04 -2.39 -0.02 0.20 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.10 0.31 7.45 -2.39 -0.02 0.29 16 36 H 0.09 0.18 7.07 -2.39 -0.02 0.16 16 37 H 0.38 5.18 5.88 -74.05 -0.44 4.75 16 38 H 0.08 1.26 7.67 -2.39 -0.02 1.24 16 39 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.43 5.64 8.62 -96.75 -0.83 4.81 16 41 H 0.15 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 46 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 47 H 0.27 15.59 8.31 -92.72 -0.77 14.82 16 Total: -1.00 -87.99 396.23 -2.66 -90.65 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.33 Total: 17.21 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 5.34 Total: -44.43 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -2.80 Total: -94.52 kcal Atomic # 8 Polarization: -72.94 SS G_CDS: -6.45 Total: -79.39 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Atomic # 16 Polarization: 66.25 SS G_CDS: -0.31 Total: 65.94 kcal Total: -87.99 -2.66 -90.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666121810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.101 kcal (2) G-P(sol) polarization free energy of solvation -87.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds