Wall clock time and date at job start Wed Apr 1 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 108.57724 * 2 1 4 4 C 1.50700 * 109.47341 * 62.94255 * 3 2 1 5 5 O 1.21276 * 120.00005 * 4.69773 * 4 3 2 6 6 N 1.34778 * 119.99750 * 184.98046 * 4 3 2 7 7 C 1.47418 * 125.65040 * 354.41856 * 6 4 3 8 8 C 1.54697 * 104.94026 * 204.07587 * 7 6 4 9 9 C 1.55154 * 101.67631 * 323.27372 * 8 7 6 10 10 C 1.47025 * 125.64586 * 174.72555 * 6 4 3 11 11 H 1.09004 * 109.88162 * 59.48274 * 10 6 4 12 12 C 1.53003 * 109.88200 * 298.32020 * 10 6 4 13 13 N 1.46500 * 109.46701 * 174.52427 * 12 10 6 14 14 C 1.36938 * 119.99851 * 174.91467 * 13 12 10 15 15 H 1.08005 * 120.00270 * 4.98433 * 14 13 12 16 16 C 1.38814 * 120.00346 * 184.98197 * 14 13 12 17 17 N 1.31615 * 120.00050 * 184.68006 * 16 14 13 18 18 Si 1.86793 * 119.99792 * 4.67487 * 16 14 13 19 19 H 1.48502 * 109.47135 * 94.19246 * 18 16 14 20 20 H 1.48506 * 109.47543 * 214.19299 * 18 16 14 21 21 H 1.48500 * 109.47239 * 334.19487 * 18 16 14 22 22 C 1.53198 * 108.64524 * 242.00424 * 2 1 3 23 23 C 1.55163 * 106.43724 * 211.47170 * 22 2 1 24 24 S 1.83902 * 99.61087 * 36.97195 * 23 22 2 25 25 O 1.42104 * 111.46386 * 215.94653 * 24 23 22 26 26 O 1.42104 * 111.61834 * 75.93111 * 24 23 22 27 27 N 1.46453 * 108.64667 * 117.99464 * 2 1 3 28 28 H 1.08994 * 109.47225 * 65.13092 * 1 2 3 29 29 H 1.08999 * 109.46771 * 185.13475 * 1 2 3 30 30 H 1.09001 * 109.47214 * 305.12533 * 1 2 3 31 31 H 1.09006 * 109.47042 * 302.93982 * 3 2 1 32 32 H 1.08998 * 109.46982 * 182.94342 * 3 2 1 33 33 H 1.09003 * 110.36715 * 323.00158 * 7 6 4 34 34 H 1.08999 * 110.36937 * 85.33022 * 7 6 4 35 35 H 1.08999 * 111.10261 * 205.10720 * 8 7 6 36 36 H 1.08995 * 110.84945 * 81.33207 * 8 7 6 37 37 H 1.08999 * 110.72210 * 276.97341 * 9 8 7 38 38 H 1.09004 * 110.87148 * 153.76777 * 9 8 7 39 39 H 1.08999 * 109.47346 * 294.52607 * 12 10 6 40 40 H 1.08999 * 109.47168 * 54.53131 * 12 10 6 41 41 H 0.96995 * 120.00789 * 354.91704 * 13 12 10 42 42 H 0.97006 * 120.00078 * 180.02562 * 17 16 14 43 43 H 1.08999 * 110.09845 * 330.70535 * 22 2 1 44 44 H 1.08997 * 110.09944 * 92.31997 * 22 2 1 45 45 H 1.08995 * 111.35107 * 279.39022 * 23 22 2 46 46 H 1.09001 * 111.45541 * 154.58987 * 23 22 2 47 47 H 0.96998 * 126.08416 * 302.61235 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4503 0.0000 4 6 1.5649 2.1324 1.2653 5 8 0.9905 1.4976 2.1243 6 7 1.7934 3.4492 1.4397 7 6 2.5717 4.3135 0.5340 8 6 3.0576 5.4848 1.4201 9 6 1.8396 5.6954 2.3579 10 6 1.3131 4.2600 2.5682 11 1 1.6987 3.8572 3.5048 12 6 -0.2168 4.2651 2.5913 13 7 -0.6846 4.9646 3.7905 14 6 -2.0231 5.1869 3.9750 15 1 -2.7397 4.7773 3.2785 16 6 -2.4592 5.9389 5.0573 17 7 -3.7479 6.0758 5.2871 18 14 -1.2169 6.7563 6.1877 19 1 -0.9857 8.1536 5.7411 20 1 -1.7401 6.7610 7.5775 21 1 0.0629 6.0043 6.1431 22 6 2.0198 -0.6814 -1.2817 23 6 3.3629 -1.3722 -0.9260 24 16 2.9762 -1.9341 0.7818 25 8 4.1153 -1.8502 1.6272 26 8 2.1264 -3.0731 0.7785 27 7 1.9983 -0.6513 1.2253 28 1 -0.3633 0.4322 -0.9323 29 1 -0.3633 -1.0236 0.0920 30 1 -0.3634 0.5913 0.8405 31 1 1.6035 1.9727 -0.8625 32 1 3.1060 1.4677 -0.0528 33 1 3.4224 3.7674 0.1263 34 1 1.9387 4.6872 -0.2709 35 1 3.2491 6.3759 0.8224 36 1 3.9432 5.2000 1.9880 37 1 1.0845 6.3163 1.8758 38 1 2.1506 6.1348 3.3057 39 1 -0.5919 4.7747 1.7038 40 1 -0.5834 3.2387 2.6032 41 1 -0.0463 5.2702 4.4539 42 1 -4.0526 6.6016 6.0432 43 1 1.2937 -1.4242 -1.6120 44 1 2.1788 0.0613 -2.0635 45 1 4.1889 -0.6611 -0.9327 46 1 3.5641 -2.2162 -1.5858 47 1 1.7806 -0.3858 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671373671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:47 Heat of formation + Delta-G solvation = -74.266447 kcal Electronic energy + Delta-G solvation = -29787.572292 eV Core-core repulsion = 25712.427412 eV Total energy + Delta-G solvation = -4075.144880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.65200 -38.90003 -37.32186 -36.93187 -36.05735 -34.72768 -32.15100 -32.07666 -31.49616 -30.63956 -29.32079 -28.00078 -25.33100 -24.54529 -23.12201 -21.93124 -21.26612 -20.40945 -19.73487 -19.15305 -17.80465 -17.57619 -16.97469 -16.88853 -16.27158 -16.00702 -15.43636 -15.21117 -14.71485 -14.50521 -14.31597 -14.08030 -13.93718 -13.67478 -13.59466 -13.30144 -13.08377 -12.83875 -12.76881 -12.53881 -12.36215 -12.30181 -12.18221 -12.08282 -11.82269 -11.71599 -11.48149 -11.36697 -11.26440 -11.16269 -10.91088 -10.83836 -10.69803 -10.55978 -10.10304 -9.68642 -9.61583 -9.58176 -8.87342 -8.58362 -7.20650 -5.75908 -3.11281 0.00712 2.39335 2.61070 2.88125 3.35728 3.36483 3.38659 3.45507 3.60110 3.83011 4.07057 4.24181 4.36892 4.45203 4.55319 4.59385 4.74309 4.83389 4.85930 4.95713 5.05240 5.06930 5.17589 5.21096 5.28635 5.33866 5.39495 5.43931 5.52586 5.59261 5.71596 5.76292 5.77700 5.88799 5.90699 5.97010 6.22184 6.29827 6.38054 6.66701 6.84256 7.15845 7.55473 8.01133 8.20462 8.42863 9.22359 9.94219 10.14459 11.42580 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.002890 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.525537 B = 9684.673438 C =10362.040899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.158 3.842 3 C -0.145 4.145 4 C 0.532 3.468 5 O -0.522 6.522 6 N -0.612 5.612 7 C 0.100 3.900 8 C -0.134 4.134 9 C -0.125 4.125 10 C 0.126 3.874 11 H 0.075 0.925 12 C 0.152 3.848 13 N -0.752 5.752 14 C -0.240 4.240 15 H 0.088 0.912 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.888 3.112 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.117 4.117 23 C -0.596 4.596 24 S 2.563 3.437 25 O -0.964 6.964 26 O -0.954 6.954 27 N -1.076 6.076 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.028 0.972 40 H 0.037 0.963 41 H 0.362 0.638 42 H 0.259 0.741 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.339 -9.563 -19.713 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 C -0.187 4.187 4 C 0.321 3.679 5 O -0.399 6.399 6 N -0.347 5.347 7 C -0.024 4.024 8 C -0.172 4.172 9 C -0.163 4.163 10 C 0.023 3.977 11 H 0.093 0.907 12 C 0.024 3.976 13 N -0.399 5.399 14 C -0.370 4.370 15 H 0.106 0.894 16 C -0.192 4.192 17 N -0.582 5.582 18 Si 0.718 3.282 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.156 4.156 23 C -0.726 4.726 24 S 2.656 3.344 25 O -0.953 6.953 26 O -0.943 6.943 27 N -0.848 5.848 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 19.051 -10.854 -18.783 28.871 hybrid contribution 0.651 1.378 0.688 1.672 sum 19.702 -9.476 -18.095 28.379 Atomic orbital electron populations 1.22411 0.92354 1.03923 1.03767 1.20274 0.97212 0.91562 0.84216 1.22250 1.03010 0.96026 0.97387 1.20053 0.79157 0.80264 0.88470 1.90610 1.41821 1.63065 1.44365 1.48538 1.53060 1.07847 1.25219 1.22288 0.94973 0.91828 0.93267 1.22753 0.98470 0.97851 0.98162 1.22708 0.97244 0.95775 1.00575 1.21851 0.96357 0.90133 0.89367 0.90676 1.20905 0.89436 0.96821 0.90402 1.42634 1.05423 1.70370 1.21483 1.19016 0.82022 1.26639 1.09350 0.89401 1.24686 0.95584 1.00466 0.98428 1.69712 1.12252 1.45011 1.31185 0.86491 0.81050 0.79787 0.80824 1.21158 1.21731 1.20517 1.22454 0.93882 1.01907 0.97372 1.30727 1.05619 1.11996 1.24294 1.06590 0.75123 0.74726 0.77914 1.93611 1.51753 1.86582 1.63357 1.93656 1.65682 1.48979 1.85999 1.55217 1.66918 1.49308 1.13330 0.91955 0.91468 0.89270 0.87847 0.88605 0.90842 0.91142 0.89835 0.90814 0.89647 0.90175 0.95371 0.94496 0.80515 0.93070 0.87939 0.86948 0.84171 0.84195 0.70776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 8.26 37.16 0.31 -1.30 16 2 C 0.16 1.28 0.83 -131.74 -0.11 1.17 16 3 C -0.14 -1.09 3.67 -27.88 -0.10 -1.19 16 4 C 0.53 6.63 6.96 -10.98 -0.08 6.56 16 5 O -0.52 -8.44 11.06 5.56 0.06 -8.38 16 6 N -0.61 -7.47 3.07 -163.15 -0.50 -7.97 16 7 C 0.10 0.82 6.64 -2.65 -0.02 0.80 16 8 C -0.13 -1.15 7.07 -24.70 -0.17 -1.33 16 9 C -0.12 -1.58 6.25 -24.90 -0.16 -1.74 16 10 C 0.13 1.94 2.89 -66.95 -0.19 1.75 16 11 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 12 C 0.15 3.04 5.67 -4.04 -0.02 3.02 16 13 N -0.75 -18.15 5.20 -59.91 -0.31 -18.46 16 14 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 15 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 16 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 17 N -0.93 -29.67 13.97 55.49 0.78 -28.90 16 18 Si 0.89 22.23 28.00 -169.99 -4.76 17.47 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.28 -6.51 6.16 56.52 0.35 -6.16 16 22 C -0.12 -0.53 5.52 -25.48 -0.14 -0.67 16 23 C -0.60 -2.60 7.65 38.30 0.29 -2.31 16 24 S 2.56 24.82 6.47 -107.50 -0.70 24.12 16 25 O -0.96 -12.86 18.14 -57.39 -1.04 -13.91 16 26 O -0.95 -12.51 18.14 -57.39 -1.04 -13.55 16 27 N -1.08 -11.30 5.62 0.60 0.00 -11.30 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.18 5.78 -51.93 -0.30 0.88 16 31 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.10 0.51 7.97 -51.93 -0.41 0.10 16 33 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 40 H 0.04 0.83 6.88 -51.93 -0.36 0.47 16 41 H 0.36 8.46 5.36 -40.82 -0.22 8.24 16 42 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 43 H 0.10 0.41 7.83 -51.93 -0.41 0.00 16 44 H 0.11 0.22 7.76 -51.93 -0.40 -0.19 16 45 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.45 5.60 6.79 -40.36 -0.27 5.33 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -39.71 376.97 -9.90 -49.61 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.43 Total: 7.88 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.65 Total: -2.30 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -0.03 Total: -66.62 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -2.02 Total: -35.83 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.76 Total: 17.47 kcal Atomic # 16 Polarization: 24.82 SS G_CDS: -0.70 Total: 24.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.71 -9.90 -49.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671373671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.658 kcal (2) G-P(sol) polarization free energy of solvation -39.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds