Wall clock time and date at job start Wed Apr 1 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 110.88654 * 2 1 4 4 N 1.46507 * 109.46894 * 303.88275 * 3 2 1 5 5 C 1.36937 * 119.99861 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99915 * 359.97438 * 5 4 3 7 7 C 1.38808 * 119.99746 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99825 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00424 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46894 * 90.00395 * 9 7 5 11 11 H 1.48500 * 109.47284 * 210.00583 * 9 7 5 12 12 H 1.48501 * 109.47188 * 330.01086 * 9 7 5 13 13 C 1.55158 * 111.00440 * 123.88014 * 2 1 3 14 14 C 1.54321 * 102.94344 * 82.57046 * 13 2 1 15 15 N 1.47027 * 107.26939 * 22.19353 * 14 13 2 16 16 C 1.34779 * 125.64831 * 181.02005 * 15 14 13 17 17 O 1.21567 * 120.00293 * 185.36414 * 16 15 14 18 18 C 1.47713 * 119.99842 * 5.37412 * 16 15 14 19 19 C 1.39995 * 119.96593 * 172.05965 * 18 16 15 20 20 C 1.36593 * 120.46186 * 179.97438 * 19 18 16 21 21 C 1.38800 * 120.21033 * 359.97438 * 20 19 18 22 22 O 1.35180 * 133.64909 * 180.02562 * 21 20 19 23 23 C 1.34392 * 108.24765 * 179.97438 * 22 21 20 24 24 O 1.35176 * 124.91259 * 179.97438 * 23 22 21 25 25 N 1.30593 * 110.18097 * 359.97438 * 23 22 21 26 26 C 1.36213 * 108.68044 * 0.02562 * 25 23 22 27 27 C 1.39210 * 133.67154 * 180.02562 * 26 25 23 28 28 C 1.47418 * 108.70446 * 1.28301 * 15 14 13 29 29 H 1.08996 * 109.46862 * 296.12225 * 1 2 3 30 30 H 1.08993 * 109.46934 * 56.12340 * 1 2 3 31 31 H 1.08998 * 109.47216 * 176.12373 * 1 2 3 32 32 H 1.08996 * 109.46945 * 63.87873 * 3 2 1 33 33 H 1.08996 * 109.47038 * 183.88609 * 3 2 1 34 34 H 0.97003 * 119.99862 * 359.97438 * 4 3 2 35 35 H 0.97002 * 120.00464 * 179.97438 * 8 7 5 36 36 H 1.09001 * 110.71884 * 324.20768 * 13 2 1 37 37 H 1.08995 * 110.87294 * 201.00684 * 13 2 1 38 38 H 1.09004 * 109.88387 * 262.77785 * 14 13 2 39 39 H 1.09001 * 110.01271 * 141.68164 * 14 13 2 40 40 H 1.08002 * 119.76488 * 359.69251 * 19 18 16 41 41 H 1.08006 * 119.89591 * 179.97438 * 20 19 18 42 42 H 0.96698 * 114.00420 * 270.02146 * 24 23 22 43 43 H 1.07996 * 120.26611 * 359.94580 * 27 26 25 44 44 H 1.09007 * 110.36449 * 94.48466 * 28 15 14 45 45 H 1.08998 * 110.36978 * 216.80405 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5302 2.1602 -1.1467 5 6 1.8802 3.4676 -1.3548 6 1 2.5580 3.9602 -0.6733 7 6 1.3631 4.1601 -2.4409 8 7 1.6991 5.4169 -2.6406 9 14 0.1902 3.3084 -3.6193 10 1 -1.2062 3.4972 -3.1504 11 1 0.3402 3.8932 -4.9760 12 1 0.5040 1.8578 -3.6679 13 6 2.0862 -0.8075 1.2025 14 6 2.0286 -2.2644 0.6969 15 7 2.0139 -2.2162 -0.7725 16 6 1.9472 -3.2835 -1.5928 17 8 2.0397 -3.1326 -2.7955 18 6 1.7613 -4.6367 -1.0304 19 6 1.5257 -5.7219 -1.8829 20 6 1.3529 -6.9776 -1.3738 21 6 1.4101 -7.1895 -0.0033 22 8 1.2823 -8.2856 0.7775 23 6 1.4308 -7.9091 2.0590 24 8 1.3651 -8.7410 3.1224 25 7 1.6478 -6.6232 2.1285 26 6 1.6466 -6.1117 0.8661 27 6 1.8231 -4.8320 0.3472 28 6 2.0908 -0.8075 -1.2001 29 1 -0.3633 0.4525 0.9227 30 1 -0.3633 0.5728 -0.8532 31 1 -0.3633 -1.0253 -0.0695 32 1 1.7823 1.9302 0.9227 33 1 3.1630 1.4033 -0.0696 34 1 0.9217 1.7176 -1.7590 35 1 1.3381 5.9008 -3.3999 36 1 1.4524 -0.6784 2.0799 37 1 3.1130 -0.5165 1.4241 38 1 1.1218 -2.7475 1.0610 39 1 2.9049 -2.8136 1.0411 40 1 1.4757 -5.5643 -2.9501 41 1 1.1712 -7.8082 -2.0398 42 1 0.4763 -8.8398 3.4902 43 1 2.0052 -3.9972 1.0076 44 1 3.1253 -0.5272 -1.3986 45 1 1.4764 -0.6458 -2.0858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671746858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:23 Heat of formation + Delta-G solvation = 18.400293 kcal Electronic energy + Delta-G solvation = -29862.724784 eV Core-core repulsion = 25656.154284 eV Total energy + Delta-G solvation = -4206.570499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.80783 -40.78777 -38.96661 -38.36316 -37.48511 -35.26216 -35.10578 -33.02208 -31.44982 -30.83325 -29.94162 -29.43615 -26.98865 -26.10678 -24.88098 -23.70059 -23.37628 -22.45306 -21.70359 -20.48851 -19.87797 -19.20084 -18.67647 -17.88135 -17.68697 -17.02920 -16.72885 -16.21921 -15.61663 -15.44324 -15.11509 -14.68759 -14.54737 -14.30278 -14.14700 -13.90282 -13.54265 -13.39702 -13.31590 -12.98253 -12.81316 -12.66642 -12.44260 -12.23697 -12.09367 -11.92453 -11.79493 -11.54073 -11.40324 -10.99692 -10.92125 -10.66073 -10.53991 -10.29378 -10.14417 -10.05780 -9.56658 -9.35975 -9.04728 -8.90645 -8.73678 -7.23846 -5.76712 -3.12463 0.07046 0.28012 1.31745 1.74943 2.48388 2.71320 2.88502 3.32745 3.38543 3.41909 3.47055 3.84772 4.03910 4.32409 4.42561 4.47019 4.58670 4.59907 4.69384 4.70657 4.77807 5.01195 5.06859 5.13669 5.25380 5.40120 5.47725 5.48435 5.55174 5.62797 5.63924 5.69046 5.76788 5.85405 5.88518 5.94037 6.01397 6.06408 6.15449 6.30390 6.43833 6.45375 6.58822 6.65245 6.92162 7.33275 7.95611 7.98637 8.42037 9.20704 9.93138 10.12131 11.41580 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.002351 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.559010 B =11905.428768 C =12707.030526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C 0.174 3.826 4 N -0.755 5.755 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 C -0.122 4.122 14 C 0.087 3.913 15 N -0.608 5.608 16 C 0.573 3.427 17 O -0.530 6.530 18 C -0.121 4.121 19 C -0.035 4.035 20 C -0.096 4.096 21 C 0.037 3.963 22 O -0.224 6.224 23 C 0.416 3.584 24 O -0.407 6.407 25 N -0.456 5.456 26 C 0.021 3.979 27 C -0.060 4.060 28 C 0.119 3.881 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.421 0.579 43 H 0.179 0.821 44 H 0.078 0.922 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -29.914 11.195 32.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C 0.047 3.953 4 N -0.401 5.401 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.710 3.290 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.202 1.202 13 C -0.161 4.161 14 C -0.036 4.036 15 N -0.341 5.341 16 C 0.362 3.638 17 O -0.407 6.407 18 C -0.125 4.125 19 C -0.054 4.054 20 C -0.115 4.115 21 C -0.013 4.013 22 O -0.118 6.118 23 C 0.166 3.834 24 O -0.215 6.215 25 N -0.198 5.198 26 C -0.091 4.091 27 C -0.078 4.078 28 C -0.002 4.002 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.174 0.826 41 H 0.163 0.837 42 H 0.282 0.718 43 H 0.195 0.805 44 H 0.097 0.903 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.984 -29.484 11.035 31.544 hybrid contribution -1.455 -1.232 -1.147 2.225 sum -3.439 -30.716 9.888 32.451 Atomic orbital electron populations 1.21701 0.93367 1.00936 1.02950 1.22073 0.96470 0.96240 0.93613 1.20555 0.96093 0.87149 0.91532 1.42756 1.56607 1.11554 1.29173 1.19030 1.23493 0.85850 1.08982 0.89169 1.24658 1.00148 0.95774 0.98442 1.69697 1.48158 1.08949 1.31321 0.86615 0.81703 0.79166 0.81487 1.21064 1.21659 1.20200 1.22774 1.02898 0.92185 0.98208 1.22594 1.01372 0.98964 0.80626 1.48400 1.71938 1.07002 1.06713 1.17626 0.77406 0.83034 0.85745 1.90827 1.50410 1.85438 1.14039 1.19832 1.05434 0.94445 0.92826 1.20889 0.93758 0.89542 1.01215 1.19586 1.04301 0.98516 0.89080 1.20303 1.03516 0.83692 0.93819 1.84478 1.73398 1.35765 1.18155 1.22456 0.96410 0.85214 0.79307 1.84924 1.36106 1.63555 1.36893 1.71091 1.21391 1.04887 1.22472 1.19495 1.06427 0.95342 0.87835 1.22052 0.94866 0.95782 0.95090 1.22484 1.02105 0.77580 0.98070 0.91926 0.91811 0.93289 0.94774 0.95124 0.80492 0.93054 0.89416 0.89737 0.90317 0.90265 0.82564 0.83719 0.71784 0.80465 0.90338 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.42 37.16 0.31 -1.48 16 2 C -0.08 -1.13 0.63 -152.24 -0.10 -1.23 16 3 C 0.17 3.08 5.25 -4.04 -0.02 3.06 16 4 N -0.75 -17.20 4.98 -59.91 -0.30 -17.50 16 5 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 9 Si 0.88 22.19 27.74 -169.99 -4.71 17.48 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 13 C -0.12 -1.20 5.91 -24.90 -0.15 -1.34 16 14 C 0.09 0.80 4.55 -3.06 -0.01 0.78 16 15 N -0.61 -7.67 3.31 -175.87 -0.58 -8.26 16 16 C 0.57 7.86 7.80 -12.39 -0.10 7.76 16 17 O -0.53 -9.15 16.65 5.31 0.09 -9.06 16 18 C -0.12 -1.31 5.87 -104.98 -0.62 -1.93 16 19 C -0.04 -0.33 9.52 -39.52 -0.38 -0.70 16 20 C -0.10 -0.77 9.99 -39.97 -0.40 -1.17 16 21 C 0.04 0.36 7.42 -38.53 -0.29 0.07 16 22 O -0.22 -2.07 10.78 -20.29 -0.22 -2.29 16 23 C 0.42 3.54 9.53 52.24 0.50 4.04 16 24 O -0.41 -2.08 13.62 -40.51 -0.55 -2.63 16 25 N -0.46 -4.72 11.38 -12.82 -0.15 -4.86 16 26 C 0.02 0.22 7.22 -84.72 -0.61 -0.40 16 27 C -0.06 -0.58 8.64 -38.84 -0.34 -0.92 16 28 C 0.12 1.78 5.60 -2.41 -0.01 1.76 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.02 6.65 -51.93 -0.35 0.67 16 31 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 34 H 0.36 8.16 4.09 -40.82 -0.17 7.99 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 38 H 0.08 0.62 6.66 -51.93 -0.35 0.28 16 39 H 0.08 0.61 6.79 -51.93 -0.35 0.26 16 40 H 0.16 1.35 7.65 -52.49 -0.40 0.95 16 41 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.42 -0.41 9.06 45.56 0.41 0.00 16 43 H 0.18 1.49 2.75 -58.10 -0.16 1.33 16 44 H 0.08 1.23 7.99 -51.93 -0.41 0.81 16 45 H 0.08 1.41 8.01 -51.93 -0.42 1.00 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -36.43 367.93 -7.27 -43.71 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.71 Total: 4.88 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.46 Total: 1.45 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.25 Total: -59.09 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.68 Total: -13.98 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.43 -7.27 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671746858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.109 kcal (2) G-P(sol) polarization free energy of solvation -36.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds