Wall clock time and date at job start Wed Apr 1 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 110.88654 * 2 1 4 4 N 1.46507 * 109.46894 * 303.88275 * 3 2 1 5 5 C 1.36937 * 119.99861 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99915 * 359.97438 * 5 4 3 7 7 C 1.38808 * 119.99746 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99825 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00424 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46894 * 90.00395 * 9 7 5 11 11 H 1.48500 * 109.47284 * 210.00583 * 9 7 5 12 12 H 1.48501 * 109.47188 * 330.01086 * 9 7 5 13 13 C 1.55158 * 111.00440 * 123.88014 * 2 1 3 14 14 C 1.54321 * 102.94344 * 82.57046 * 13 2 1 15 15 N 1.47027 * 107.26939 * 22.19353 * 14 13 2 16 16 C 1.34779 * 125.64831 * 181.02005 * 15 14 13 17 17 O 1.21567 * 120.00293 * 185.36414 * 16 15 14 18 18 C 1.47713 * 119.99842 * 5.37412 * 16 15 14 19 19 C 1.39995 * 119.96593 * 172.05965 * 18 16 15 20 20 C 1.36593 * 120.46186 * 179.97438 * 19 18 16 21 21 C 1.38800 * 120.21033 * 359.97438 * 20 19 18 22 22 O 1.35180 * 133.64909 * 180.02562 * 21 20 19 23 23 C 1.34392 * 108.24765 * 179.97438 * 22 21 20 24 24 O 1.35176 * 124.91259 * 179.97438 * 23 22 21 25 25 N 1.30593 * 110.18097 * 359.97438 * 23 22 21 26 26 C 1.36213 * 108.68044 * 0.02562 * 25 23 22 27 27 C 1.39210 * 133.67154 * 180.02562 * 26 25 23 28 28 C 1.47418 * 108.70446 * 1.28301 * 15 14 13 29 29 H 1.08996 * 109.46862 * 296.12225 * 1 2 3 30 30 H 1.08993 * 109.46934 * 56.12340 * 1 2 3 31 31 H 1.08998 * 109.47216 * 176.12373 * 1 2 3 32 32 H 1.08996 * 109.46945 * 63.87873 * 3 2 1 33 33 H 1.08996 * 109.47038 * 183.88609 * 3 2 1 34 34 H 0.97003 * 119.99862 * 359.97438 * 4 3 2 35 35 H 0.97002 * 120.00464 * 179.97438 * 8 7 5 36 36 H 1.09001 * 110.71884 * 324.20768 * 13 2 1 37 37 H 1.08995 * 110.87294 * 201.00684 * 13 2 1 38 38 H 1.09004 * 109.88387 * 262.77785 * 14 13 2 39 39 H 1.09001 * 110.01271 * 141.68164 * 14 13 2 40 40 H 1.08002 * 119.76488 * 359.69251 * 19 18 16 41 41 H 1.08006 * 119.89591 * 179.97438 * 20 19 18 42 42 H 0.96698 * 114.00420 * 270.02146 * 24 23 22 43 43 H 1.07996 * 120.26611 * 359.94580 * 27 26 25 44 44 H 1.09007 * 110.36449 * 94.48466 * 28 15 14 45 45 H 1.08998 * 110.36978 * 216.80405 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5302 2.1602 -1.1467 5 6 1.8802 3.4676 -1.3548 6 1 2.5580 3.9602 -0.6733 7 6 1.3631 4.1601 -2.4409 8 7 1.6991 5.4169 -2.6406 9 14 0.1902 3.3084 -3.6193 10 1 -1.2062 3.4972 -3.1504 11 1 0.3402 3.8932 -4.9760 12 1 0.5040 1.8578 -3.6679 13 6 2.0862 -0.8075 1.2025 14 6 2.0286 -2.2644 0.6969 15 7 2.0139 -2.2162 -0.7725 16 6 1.9472 -3.2835 -1.5928 17 8 2.0397 -3.1326 -2.7955 18 6 1.7613 -4.6367 -1.0304 19 6 1.5257 -5.7219 -1.8829 20 6 1.3529 -6.9776 -1.3738 21 6 1.4101 -7.1895 -0.0033 22 8 1.2823 -8.2856 0.7775 23 6 1.4308 -7.9091 2.0590 24 8 1.3651 -8.7410 3.1224 25 7 1.6478 -6.6232 2.1285 26 6 1.6466 -6.1117 0.8661 27 6 1.8231 -4.8320 0.3472 28 6 2.0908 -0.8075 -1.2001 29 1 -0.3633 0.4525 0.9227 30 1 -0.3633 0.5728 -0.8532 31 1 -0.3633 -1.0253 -0.0695 32 1 1.7823 1.9302 0.9227 33 1 3.1630 1.4033 -0.0696 34 1 0.9217 1.7176 -1.7590 35 1 1.3381 5.9008 -3.3999 36 1 1.4524 -0.6784 2.0799 37 1 3.1130 -0.5165 1.4241 38 1 1.1218 -2.7475 1.0610 39 1 2.9049 -2.8136 1.0411 40 1 1.4757 -5.5643 -2.9501 41 1 1.1712 -7.8082 -2.0398 42 1 0.4763 -8.8398 3.4902 43 1 2.0052 -3.9972 1.0076 44 1 3.1253 -0.5272 -1.3986 45 1 1.4764 -0.6458 -2.0858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671746858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:22 Heat of formation + Delta-G solvation = -11.960182 kcal Electronic energy + Delta-G solvation = -29864.041313 eV Core-core repulsion = 25656.154284 eV Total energy + Delta-G solvation = -4207.887028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.46689 -41.76178 -39.78120 -39.08748 -38.29238 -36.75207 -35.82763 -34.57089 -32.89254 -32.02637 -30.74075 -30.40073 -28.10786 -27.53970 -25.88427 -24.60065 -24.20734 -23.64764 -22.82694 -21.36655 -20.48526 -20.40760 -19.81352 -19.17382 -18.52128 -17.87723 -17.61254 -17.26261 -16.61804 -16.43896 -16.18838 -15.89650 -15.58208 -15.46574 -15.27823 -15.01369 -14.71145 -14.62137 -14.33925 -13.90171 -13.84834 -13.70517 -13.58424 -13.45493 -13.23875 -12.99921 -12.85041 -12.78590 -12.54233 -12.37881 -12.17553 -11.91213 -11.79238 -11.69397 -11.53974 -11.34037 -11.15155 -10.97345 -10.11433 -9.81439 -9.64244 -9.26888 -8.02390 -5.33958 -0.56383 -0.47720 0.74626 1.10211 1.35686 1.38019 1.44377 1.59096 1.75931 2.24425 2.46788 2.52818 3.16493 3.18793 3.29875 3.47074 3.52780 3.73286 3.78624 3.87579 3.95732 4.00693 4.02946 4.17641 4.27314 4.28339 4.46789 4.49947 4.64137 4.71566 4.77795 4.84104 4.88637 4.95240 4.95960 5.03213 5.04335 5.08489 5.15700 5.22675 5.28187 5.30183 5.44073 5.77904 6.17653 6.22097 6.28975 6.35598 6.93195 7.09154 7.86564 8.03182 9.19239 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.002351 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.559010 B =11905.428768 C =12707.030526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 C 0.170 3.830 4 N -0.758 5.758 5 C -0.226 4.226 6 H 0.062 0.938 7 C -0.062 4.062 8 N -0.982 5.982 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.261 1.261 13 C -0.112 4.112 14 C 0.083 3.917 15 N -0.605 5.605 16 C 0.569 3.431 17 O -0.577 6.577 18 C -0.130 4.130 19 C -0.042 4.042 20 C -0.083 4.083 21 C 0.028 3.972 22 O -0.227 6.227 23 C 0.430 3.570 24 O -0.404 6.404 25 N -0.480 5.480 26 C 0.009 3.991 27 C -0.054 4.054 28 C 0.120 3.880 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.364 0.636 35 H 0.257 0.743 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.448 0.552 43 H 0.192 0.808 44 H 0.065 0.935 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 -33.355 13.219 36.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.076 4.076 3 C 0.044 3.956 4 N -0.404 5.404 5 C -0.357 4.357 6 H 0.080 0.920 7 C -0.254 4.254 8 N -0.633 5.633 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.224 1.224 12 H -0.186 1.186 13 C -0.150 4.150 14 C -0.038 4.038 15 N -0.337 5.337 16 C 0.360 3.640 17 O -0.458 6.458 18 C -0.134 4.134 19 C -0.060 4.060 20 C -0.101 4.101 21 C -0.022 4.022 22 O -0.121 6.121 23 C 0.179 3.821 24 O -0.217 6.217 25 N -0.224 5.224 26 C -0.103 4.103 27 C -0.072 4.072 28 C -0.003 4.003 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.197 0.803 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.176 0.824 41 H 0.191 0.809 42 H 0.314 0.686 43 H 0.208 0.792 44 H 0.083 0.917 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.960 -32.988 13.147 35.635 hybrid contribution -1.089 -0.270 -1.607 1.960 sum -4.050 -33.258 11.541 35.436 Atomic orbital electron populations 1.21678 0.92943 1.01657 1.02396 1.21926 0.96660 0.93814 0.95242 1.20755 0.95926 0.89257 0.89708 1.42814 1.56705 1.10122 1.30768 1.19053 1.21439 0.87626 1.07560 0.91971 1.25402 1.02730 0.96508 1.00733 1.69863 1.50373 1.10787 1.32326 0.85565 0.79782 0.78737 0.78662 1.20105 1.22407 1.18573 1.22805 1.03750 0.91283 0.97138 1.22888 1.03574 0.99104 0.78240 1.48421 1.71247 1.05732 1.08280 1.18087 0.76492 0.84117 0.85277 1.90795 1.52703 1.86230 1.16064 1.19617 1.07174 0.93081 0.93577 1.20966 0.94059 0.89745 1.01279 1.19801 1.02637 0.98711 0.88998 1.20535 1.03627 0.83749 0.94333 1.84494 1.73433 1.35652 1.18505 1.22647 0.94536 0.85202 0.79676 1.84905 1.38526 1.62637 1.35632 1.71085 1.23035 1.05763 1.22469 1.19633 1.06710 0.95690 0.88240 1.22060 0.94435 0.96159 0.94556 1.22280 1.00727 0.79569 0.97713 0.90478 0.94648 0.91590 0.94064 0.95298 0.80251 0.93437 0.86688 0.88906 0.88128 0.87990 0.82418 0.80934 0.68606 0.79195 0.91718 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.42 71.98 0.61 -2.65 16 2 C -0.08 -1.93 0.63 -50.71 -0.03 -1.97 16 3 C 0.17 5.87 5.25 86.38 0.45 6.32 16 4 N -0.76 -34.60 4.98 -343.45 -1.71 -36.31 16 5 C -0.23 -12.77 10.47 84.03 0.88 -11.89 16 6 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 7 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 8 N -0.98 -63.44 13.97 21.65 0.30 -63.14 16 9 Si 0.94 46.75 27.74 68.60 1.90 48.65 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 12 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 13 C -0.11 -1.80 5.91 31.78 0.19 -1.61 16 14 C 0.08 1.25 4.55 86.73 0.39 1.65 16 15 N -0.61 -14.51 3.31 -828.60 -2.74 -17.25 16 16 C 0.57 15.35 7.80 86.75 0.68 16.02 16 17 O -0.58 -20.38 16.65 -3.93 -0.07 -20.44 16 18 C -0.13 -2.64 5.87 -20.10 -0.12 -2.76 16 19 C -0.04 -0.72 9.52 22.31 0.21 -0.51 16 20 C -0.08 -1.15 9.99 22.02 0.22 -0.93 16 21 C 0.03 0.48 7.42 22.95 0.17 0.65 16 22 O -0.23 -3.60 10.78 10.07 0.11 -3.49 16 23 C 0.43 6.16 9.53 130.43 1.24 7.40 16 24 O -0.40 -2.89 13.62 -62.28 -0.85 -3.74 16 25 N -0.48 -8.72 11.38 -422.84 -4.81 -13.53 16 26 C 0.01 0.16 7.22 39.24 0.28 0.44 16 27 C -0.05 -0.93 8.64 22.75 0.20 -0.73 16 28 C 0.12 3.54 5.60 86.93 0.49 4.03 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 1.09 6.65 -2.39 -0.02 1.07 16 31 H 0.07 1.43 7.91 -2.39 -0.02 1.41 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 1.03 8.07 -2.39 -0.02 1.01 16 34 H 0.36 16.35 4.09 -92.71 -0.38 15.97 16 35 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.11 1.31 8.05 -2.39 -0.02 1.29 16 37 H 0.09 1.39 8.04 -2.39 -0.02 1.37 16 38 H 0.10 1.17 6.66 -2.39 -0.02 1.15 16 39 H 0.10 1.17 6.79 -2.39 -0.02 1.15 16 40 H 0.16 2.64 7.65 -2.91 -0.02 2.62 16 41 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 42 H 0.45 -2.40 9.06 -74.06 -0.67 -3.07 16 43 H 0.19 2.56 2.75 -8.18 -0.02 2.54 16 44 H 0.06 2.06 7.99 -2.38 -0.02 2.04 16 45 H 0.05 1.84 8.01 -2.39 -0.02 1.82 16 Total: -1.00 -81.90 367.93 -1.59 -83.48 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -0.05 Total: 15.54 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.33 Total: 10.23 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -8.96 Total: -130.23 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.81 Total: -27.67 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Total: -81.90 -1.59 -83.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671746858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.524 kcal (2) G-P(sol) polarization free energy of solvation -81.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds