Wall clock time and date at job start Wed Apr 1 2020 03:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 108.58107 * 2 1 4 4 C 1.50693 * 109.47410 * 298.97603 * 3 2 1 5 5 O 1.21287 * 120.00113 * 354.99793 * 4 3 2 6 6 N 1.34775 * 120.00255 * 174.99234 * 4 3 2 7 7 C 1.46506 * 120.00342 * 180.02562 * 6 4 3 8 8 C 1.53778 * 113.61538 * 254.14021 * 7 6 4 9 9 C 1.54055 * 86.98264 * 270.83677 * 8 7 6 10 10 C 1.52999 * 113.61708 * 220.02023 * 9 8 7 11 11 N 1.46500 * 109.47178 * 272.49511 * 10 9 8 12 12 C 1.36940 * 120.00070 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99914 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99926 * 179.97438 * 12 11 10 15 15 N 1.31613 * 120.00034 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47033 * 60.00056 * 16 14 12 18 18 H 1.48494 * 109.47062 * 180.02562 * 16 14 12 19 19 H 1.48512 * 109.47053 * 300.00551 * 16 14 12 20 20 C 1.53773 * 113.61797 * 156.52847 * 7 6 4 21 21 C 1.53262 * 108.66818 * 117.78452 * 2 1 3 22 22 C 1.55551 * 106.21272 * 148.60879 * 21 2 1 23 23 S 1.83898 * 99.69265 * 323.08179 * 22 21 2 24 24 O 1.42097 * 111.47124 * 144.06142 * 23 22 21 25 25 O 1.42101 * 111.46854 * 283.91583 * 23 22 21 26 26 N 1.46454 * 108.64683 * 242.00051 * 2 1 3 27 27 H 1.08999 * 109.47592 * 184.64035 * 1 2 3 28 28 H 1.08997 * 109.46864 * 304.64513 * 1 2 3 29 29 H 1.08997 * 109.47127 * 64.64065 * 1 2 3 30 30 H 1.08996 * 109.47148 * 58.98233 * 3 2 1 31 31 H 1.09005 * 109.46989 * 178.97630 * 3 2 1 32 32 H 0.96993 * 120.00149 * 0.02562 * 6 4 3 33 33 H 1.09007 * 112.84428 * 25.32799 * 7 6 4 34 34 H 1.09000 * 113.61316 * 25.42670 * 8 7 6 35 35 H 1.08994 * 113.62007 * 156.32823 * 8 7 6 36 36 H 1.08998 * 113.61332 * 89.11724 * 9 8 7 37 37 H 1.09004 * 109.47179 * 32.49244 * 10 9 8 38 38 H 1.08999 * 109.47241 * 152.48967 * 10 9 8 39 39 H 0.96999 * 120.00451 * 359.97438 * 11 10 9 40 40 H 0.97007 * 119.99998 * 179.97438 * 15 14 12 41 41 H 1.09003 * 113.61862 * 203.66316 * 20 7 6 42 42 H 1.08995 * 113.61414 * 334.56759 * 20 7 6 43 43 H 1.09008 * 110.07580 * 29.44602 * 21 2 1 44 44 H 1.09000 * 110.15490 * 267.81662 * 21 2 1 45 45 H 1.09008 * 111.37404 * 205.45159 * 22 21 2 46 46 H 1.09000 * 111.37363 * 80.71322 * 22 21 2 47 47 H 0.96995 * 126.07794 * 57.21427 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5252 2.1457 -1.2429 5 8 0.9285 1.5189 -2.0926 6 7 1.7478 3.4644 -1.4103 7 6 1.2687 4.1407 -2.6183 8 6 2.3864 4.4807 -3.6183 9 6 2.5405 5.8168 -2.8671 10 6 2.7824 7.0139 -3.7887 11 7 4.2186 7.1527 -4.0421 12 6 4.6776 8.1617 -4.8461 13 1 3.9809 8.8553 -5.2931 14 6 6.0386 8.2936 -5.0858 15 7 6.8877 7.4486 -4.5406 16 14 6.6647 9.6704 -6.1820 17 1 6.2737 10.9808 -5.6030 18 1 8.1446 9.5927 -6.2777 19 1 6.0735 9.5319 -7.5373 20 6 1.0722 5.6553 -2.4396 21 6 2.0205 -0.6768 1.2846 22 6 3.3675 -1.3667 0.9249 23 16 2.9801 -1.9313 -0.7819 24 8 4.1177 -1.8455 -1.6289 25 8 2.1362 -3.0745 -0.7725 26 7 1.9982 -0.6515 -1.2252 27 1 -0.3634 -1.0243 0.0831 28 1 -0.3633 0.5842 0.8454 29 1 -0.3633 0.4401 -0.9286 30 1 1.6313 1.9633 0.8807 31 1 3.1073 1.4672 0.0184 32 1 2.2253 3.9657 -0.7309 33 1 0.4137 3.6400 -3.0728 34 1 3.2571 3.8300 -3.5378 35 1 2.0352 4.5943 -4.6438 36 1 3.2447 5.7719 -2.0363 37 1 2.2604 6.8569 -4.7327 38 1 2.4080 7.9203 -3.3129 39 1 4.8445 6.5300 -3.6403 40 1 7.8387 7.5406 -4.7084 41 1 0.3622 6.0896 -3.1435 42 1 0.8826 5.9522 -1.4081 43 1 1.2956 -1.4204 1.6161 44 1 2.1777 0.0677 2.0650 45 1 3.5710 -2.2096 1.5855 46 1 4.1925 -0.6543 0.9299 47 1 1.7787 -0.3873 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674604976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:57 Heat of formation + Delta-G solvation = -67.528451 kcal Electronic energy + Delta-G solvation = -28582.845584 eV Core-core repulsion = 24507.992886 eV Total energy + Delta-G solvation = -4074.852698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.73062 -39.23391 -37.67992 -37.19966 -36.11192 -34.57278 -33.27968 -32.15095 -31.13636 -30.65566 -28.51434 -26.66559 -25.54327 -24.63245 -23.41788 -21.74853 -21.31358 -20.55411 -19.81075 -19.12313 -17.84917 -17.41195 -17.06681 -16.65820 -16.10224 -15.89926 -15.75747 -15.12993 -14.95710 -14.72969 -14.37023 -14.16132 -14.07952 -13.79092 -13.68458 -13.38057 -12.99496 -12.96911 -12.63857 -12.40063 -12.37155 -12.22872 -12.22092 -12.13384 -11.96142 -11.75967 -11.53391 -11.34196 -11.04017 -10.89033 -10.81826 -10.51172 -10.38049 -10.12494 -9.91543 -9.84613 -9.73060 -9.61357 -9.06095 -8.84538 -6.90805 -5.76012 -3.04334 -0.04109 2.31616 2.42967 2.93421 3.30164 3.44130 3.48416 3.49609 3.50719 3.77541 4.04286 4.14792 4.43685 4.51816 4.57496 4.65053 4.74837 4.79231 4.90616 4.96002 5.02647 5.05466 5.08300 5.11324 5.20528 5.31742 5.53825 5.57976 5.66930 5.74377 5.81782 5.90238 5.96933 6.06065 6.11295 6.21860 6.28913 6.40119 6.58992 6.76368 6.91178 7.06257 7.35160 7.69637 8.07206 8.43243 9.54104 10.13085 10.47388 11.46895 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.002133 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.969344 B =13123.386482 C =14156.210816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.159 3.841 3 C -0.153 4.153 4 C 0.521 3.479 5 O -0.536 6.536 6 N -0.708 5.708 7 C 0.115 3.885 8 C -0.139 4.139 9 C -0.113 4.113 10 C 0.162 3.838 11 N -0.732 5.732 12 C -0.240 4.240 13 H 0.069 0.931 14 C -0.015 4.015 15 N -0.934 5.934 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.137 4.137 21 C -0.117 4.117 22 C -0.597 4.597 23 S 2.564 3.436 24 O -0.959 6.959 25 O -0.956 6.956 26 N -1.077 6.077 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.402 0.598 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 -16.968 17.956 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.068 3.932 3 C -0.195 4.195 4 C 0.308 3.692 5 O -0.414 6.414 6 N -0.358 5.358 7 C 0.010 3.990 8 C -0.177 4.177 9 C -0.132 4.132 10 C 0.035 3.965 11 N -0.376 5.376 12 C -0.371 4.371 13 H 0.087 0.913 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.738 3.262 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.176 4.176 21 C -0.156 4.156 22 C -0.727 4.727 23 S 2.657 3.343 24 O -0.948 6.948 25 O -0.945 6.945 26 N -0.848 5.848 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.236 0.764 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -13.854 -18.131 16.711 28.283 hybrid contribution 0.882 1.592 0.029 1.821 sum -12.972 -16.539 16.740 26.871 Atomic orbital electron populations 1.22419 0.92675 1.03024 1.04264 1.20254 0.96929 0.91639 0.84358 1.22304 1.03569 0.96039 0.97571 1.20421 0.78857 0.81866 0.88062 1.90566 1.41500 1.64676 1.44628 1.45731 1.58431 1.09161 1.22498 1.21948 0.98056 0.92916 0.86054 1.23454 0.98472 0.97211 0.98609 1.22806 0.95386 0.95980 0.99004 1.20634 0.87439 0.93612 0.94851 1.42338 1.00793 1.35684 1.58764 1.19194 0.91013 1.05599 1.21339 0.91308 1.24742 0.95986 0.99268 1.01065 1.69647 1.01857 1.38448 1.48337 0.86263 0.77668 0.81745 0.80477 1.21300 1.21684 1.21274 1.23297 0.98227 0.94160 1.01922 1.22545 0.93921 1.01930 0.97212 1.30819 1.05639 1.12137 1.24143 1.06567 0.75112 0.74621 0.77965 1.93636 1.51604 1.86437 1.63162 1.93649 1.66179 1.48522 1.86140 1.55181 1.66955 1.49537 1.13108 0.91747 0.92040 0.89207 0.87760 0.87998 0.76395 0.88329 0.91291 0.89168 0.89474 0.96249 0.96463 0.78346 0.93482 0.88751 0.91323 0.88023 0.86868 0.84138 0.83942 0.71009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 8.14 37.16 0.30 -0.82 16 2 C 0.16 1.00 0.83 -131.71 -0.11 0.89 16 3 C -0.15 -0.87 4.66 -27.89 -0.13 -1.00 16 4 C 0.52 4.97 7.30 -10.99 -0.08 4.89 16 5 O -0.54 -6.67 11.47 5.55 0.06 -6.60 16 6 N -0.71 -6.59 5.26 -53.02 -0.28 -6.87 16 7 C 0.12 1.31 4.29 -67.12 -0.29 1.02 16 8 C -0.14 -1.98 7.45 -25.78 -0.19 -2.17 16 9 C -0.11 -1.67 3.65 -89.66 -0.33 -1.99 16 10 C 0.16 3.17 6.10 -4.04 -0.02 3.14 16 11 N -0.73 -18.48 5.60 -59.91 -0.34 -18.81 16 12 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 13 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 14 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 15 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 16 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 C -0.14 -1.52 7.38 -25.92 -0.19 -1.71 16 21 C -0.12 -0.40 5.56 -25.24 -0.14 -0.54 16 22 C -0.60 -2.39 7.65 38.51 0.29 -2.10 16 23 S 2.56 23.05 6.47 -107.50 -0.70 22.35 16 24 O -0.96 -12.75 18.14 -57.40 -1.04 -13.79 16 25 O -0.96 -11.57 18.15 -57.40 -1.04 -12.62 16 26 N -1.08 -9.66 5.65 0.62 0.00 -9.65 16 27 H 0.06 0.44 8.05 -51.93 -0.42 0.02 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.84 5.83 -51.93 -0.30 0.54 16 30 H 0.10 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.40 2.92 8.70 -40.82 -0.36 2.56 16 33 H 0.10 1.19 7.50 -51.92 -0.39 0.80 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.28 7.77 -51.92 -0.40 -0.13 16 44 H 0.11 0.11 7.73 -51.93 -0.40 -0.29 16 45 H 0.14 0.28 8.14 -51.92 -0.42 -0.14 16 46 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.44 4.70 6.94 -40.37 -0.28 4.42 16 LS Contribution 386.56 15.07 5.83 5.83 Total: -1.00 -38.55 386.56 -10.38 -48.93 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.45 Total: 9.24 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.13 Total: -7.83 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.11 Total: -63.00 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -2.02 Total: -33.01 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 23.05 SS G_CDS: -0.70 Total: 22.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.55 -10.38 -48.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674604976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.603 kcal (2) G-P(sol) polarization free energy of solvation -38.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds