Wall clock time and date at job start Wed Apr 1 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 108.58107 * 2 1 4 4 C 1.50693 * 109.47410 * 298.97603 * 3 2 1 5 5 O 1.21287 * 120.00113 * 354.99793 * 4 3 2 6 6 N 1.34775 * 120.00255 * 174.99234 * 4 3 2 7 7 C 1.46506 * 120.00342 * 180.02562 * 6 4 3 8 8 C 1.53778 * 113.61538 * 254.14021 * 7 6 4 9 9 C 1.54055 * 86.98264 * 270.83677 * 8 7 6 10 10 C 1.52999 * 113.61708 * 220.02023 * 9 8 7 11 11 N 1.46500 * 109.47178 * 272.49511 * 10 9 8 12 12 C 1.36940 * 120.00070 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99914 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99926 * 179.97438 * 12 11 10 15 15 N 1.31613 * 120.00034 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47033 * 60.00056 * 16 14 12 18 18 H 1.48494 * 109.47062 * 180.02562 * 16 14 12 19 19 H 1.48512 * 109.47053 * 300.00551 * 16 14 12 20 20 C 1.53773 * 113.61797 * 156.52847 * 7 6 4 21 21 C 1.53262 * 108.66818 * 117.78452 * 2 1 3 22 22 C 1.55551 * 106.21272 * 148.60879 * 21 2 1 23 23 S 1.83898 * 99.69265 * 323.08179 * 22 21 2 24 24 O 1.42097 * 111.47124 * 144.06142 * 23 22 21 25 25 O 1.42101 * 111.46854 * 283.91583 * 23 22 21 26 26 N 1.46454 * 108.64683 * 242.00051 * 2 1 3 27 27 H 1.08999 * 109.47592 * 184.64035 * 1 2 3 28 28 H 1.08997 * 109.46864 * 304.64513 * 1 2 3 29 29 H 1.08997 * 109.47127 * 64.64065 * 1 2 3 30 30 H 1.08996 * 109.47148 * 58.98233 * 3 2 1 31 31 H 1.09005 * 109.46989 * 178.97630 * 3 2 1 32 32 H 0.96993 * 120.00149 * 0.02562 * 6 4 3 33 33 H 1.09007 * 112.84428 * 25.32799 * 7 6 4 34 34 H 1.09000 * 113.61316 * 25.42670 * 8 7 6 35 35 H 1.08994 * 113.62007 * 156.32823 * 8 7 6 36 36 H 1.08998 * 113.61332 * 89.11724 * 9 8 7 37 37 H 1.09004 * 109.47179 * 32.49244 * 10 9 8 38 38 H 1.08999 * 109.47241 * 152.48967 * 10 9 8 39 39 H 0.96999 * 120.00451 * 359.97438 * 11 10 9 40 40 H 0.97007 * 119.99998 * 179.97438 * 15 14 12 41 41 H 1.09003 * 113.61862 * 203.66316 * 20 7 6 42 42 H 1.08995 * 113.61414 * 334.56759 * 20 7 6 43 43 H 1.09008 * 110.07580 * 29.44602 * 21 2 1 44 44 H 1.09000 * 110.15490 * 267.81662 * 21 2 1 45 45 H 1.09008 * 111.37404 * 205.45159 * 22 21 2 46 46 H 1.09000 * 111.37363 * 80.71322 * 22 21 2 47 47 H 0.96995 * 126.07794 * 57.21427 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5252 2.1457 -1.2429 5 8 0.9285 1.5189 -2.0926 6 7 1.7478 3.4644 -1.4103 7 6 1.2687 4.1407 -2.6183 8 6 2.3864 4.4807 -3.6183 9 6 2.5405 5.8168 -2.8671 10 6 2.7824 7.0139 -3.7887 11 7 4.2186 7.1527 -4.0421 12 6 4.6776 8.1617 -4.8461 13 1 3.9809 8.8553 -5.2931 14 6 6.0386 8.2936 -5.0858 15 7 6.8877 7.4486 -4.5406 16 14 6.6647 9.6704 -6.1820 17 1 6.2737 10.9808 -5.6030 18 1 8.1446 9.5927 -6.2777 19 1 6.0735 9.5319 -7.5373 20 6 1.0722 5.6553 -2.4396 21 6 2.0205 -0.6768 1.2846 22 6 3.3675 -1.3667 0.9249 23 16 2.9801 -1.9313 -0.7819 24 8 4.1177 -1.8455 -1.6289 25 8 2.1362 -3.0745 -0.7725 26 7 1.9982 -0.6515 -1.2252 27 1 -0.3634 -1.0243 0.0831 28 1 -0.3633 0.5842 0.8454 29 1 -0.3633 0.4401 -0.9286 30 1 1.6313 1.9633 0.8807 31 1 3.1073 1.4672 0.0184 32 1 2.2253 3.9657 -0.7309 33 1 0.4137 3.6400 -3.0728 34 1 3.2571 3.8300 -3.5378 35 1 2.0352 4.5943 -4.6438 36 1 3.2447 5.7719 -2.0363 37 1 2.2604 6.8569 -4.7327 38 1 2.4080 7.9203 -3.3129 39 1 4.8445 6.5300 -3.6403 40 1 7.8387 7.5406 -4.7084 41 1 0.3622 6.0896 -3.1435 42 1 0.8826 5.9522 -1.4081 43 1 1.2956 -1.4204 1.6161 44 1 2.1777 0.0677 2.0650 45 1 3.5710 -2.2096 1.5855 46 1 4.1925 -0.6543 0.9299 47 1 1.7787 -0.3873 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674604976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:55 Heat of formation + Delta-G solvation = -100.205413 kcal Electronic energy + Delta-G solvation = -28584.262564 eV Core-core repulsion = 24507.992886 eV Total energy + Delta-G solvation = -4076.269677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.47118 -40.10237 -38.44015 -37.97043 -36.90695 -36.31113 -34.39816 -32.83744 -32.59744 -31.41954 -29.23063 -28.12326 -26.61208 -25.31992 -24.89228 -23.03401 -22.17265 -21.12327 -20.46622 -20.24756 -19.05953 -18.49661 -18.06588 -17.38089 -16.84619 -16.78438 -16.62066 -16.39178 -15.93264 -15.69453 -15.53041 -15.21963 -15.10359 -14.72008 -14.49820 -14.43742 -14.05160 -13.76397 -13.52517 -13.42959 -13.23600 -13.19904 -13.08593 -13.06185 -12.86569 -12.66428 -12.55751 -12.48672 -12.23519 -12.10528 -11.92700 -11.86429 -11.71713 -11.38831 -11.32237 -11.12545 -10.85027 -10.62564 -10.31945 -9.92090 -8.98394 -7.95593 -5.23845 -0.64599 1.46185 1.49380 1.55541 1.69662 1.75823 2.24608 2.55714 2.72863 3.08795 3.37259 3.37974 3.58386 3.62187 3.62532 3.71103 3.91600 3.96213 3.97751 4.09794 4.33464 4.34468 4.51776 4.59784 4.67001 4.74795 4.76131 4.79090 4.85958 4.88638 4.93742 4.93860 4.97840 4.99880 5.10308 5.17254 5.28809 5.32174 5.38915 5.48661 5.58020 5.75188 6.27237 6.29747 6.66662 7.33143 7.38999 8.11444 8.33581 9.27793 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.002133 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.969344 B =13123.386482 C =14156.210816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.149 4.149 4 C 0.511 3.489 5 O -0.571 6.571 6 N -0.704 5.704 7 C 0.130 3.870 8 C -0.147 4.147 9 C -0.110 4.110 10 C 0.159 3.841 11 N -0.745 5.745 12 C -0.248 4.248 13 H 0.074 0.926 14 C -0.077 4.077 15 N -0.970 5.970 16 Si 0.974 3.026 17 H -0.275 1.275 18 H -0.295 1.295 19 H -0.280 1.280 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.552 4.552 23 S 2.541 3.459 24 O -1.017 7.017 25 O -1.002 7.002 26 N -1.087 6.087 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.147 0.853 31 H 0.118 0.882 32 H 0.414 0.586 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.016 0.984 38 H 0.022 0.978 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.157 0.843 45 H 0.172 0.828 46 H 0.167 0.833 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.520 -15.795 21.406 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.058 3.942 3 C -0.190 4.190 4 C 0.300 3.700 5 O -0.451 6.451 6 N -0.355 5.355 7 C 0.024 3.976 8 C -0.186 4.186 9 C -0.129 4.129 10 C 0.032 3.968 11 N -0.388 5.388 12 C -0.379 4.379 13 H 0.092 0.908 14 C -0.269 4.269 15 N -0.621 5.621 16 Si 0.802 3.198 17 H -0.201 1.201 18 H -0.221 1.221 19 H -0.206 1.206 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.687 4.687 23 S 2.641 3.359 24 O -1.007 7.007 25 O -0.992 6.992 26 N -0.855 5.855 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.165 0.835 31 H 0.136 0.864 32 H 0.251 0.749 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.175 0.825 45 H 0.190 0.810 46 H 0.185 0.815 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -14.696 -16.967 20.144 30.160 hybrid contribution 1.044 1.239 -1.018 1.914 sum -13.652 -15.729 19.126 28.277 Atomic orbital electron populations 1.22382 0.93300 1.02767 1.03771 1.20631 0.96655 0.92408 0.84521 1.22438 1.04542 0.95218 0.96831 1.21263 0.78097 0.81633 0.89026 1.90575 1.43009 1.65329 1.46192 1.45697 1.58477 1.09422 1.21908 1.21659 0.96302 0.93479 0.86151 1.23470 0.99022 0.97075 0.99020 1.22731 0.98230 0.93757 0.98154 1.20840 0.84266 0.95885 0.95767 1.42577 1.03018 1.34842 1.58329 1.19624 0.91388 1.05949 1.20988 0.90798 1.25578 0.96352 1.01946 1.03049 1.69806 1.01737 1.40385 1.50124 0.85213 0.76576 0.79198 0.78791 1.20126 1.22114 1.20613 1.23189 0.95197 0.93401 1.03562 1.22756 0.93182 1.03152 0.96236 1.30620 1.07099 1.13523 1.17501 1.06969 0.74034 0.74300 0.80557 1.93556 1.53102 1.87001 1.67036 1.93582 1.66969 1.50834 1.87775 1.55191 1.67220 1.49480 1.13642 0.92469 0.89260 0.92322 0.83479 0.86385 0.74891 0.89001 0.93367 0.90417 0.89375 0.96612 0.95989 0.79545 0.94015 0.88109 0.88631 0.86951 0.82470 0.81020 0.81539 0.72463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.14 71.98 0.59 -1.36 16 2 C 0.15 1.49 0.83 3.70 0.00 1.49 16 3 C -0.15 -1.15 4.66 29.84 0.14 -1.01 16 4 C 0.51 8.96 7.30 87.65 0.64 9.60 16 5 O -0.57 -14.43 11.47 -3.05 -0.03 -14.46 16 6 N -0.70 -11.70 5.26 -440.04 -2.32 -14.01 16 7 C 0.13 2.82 4.29 45.51 0.20 3.02 16 8 C -0.15 -4.27 7.45 31.21 0.23 -4.03 16 9 C -0.11 -3.15 3.65 -10.17 -0.04 -3.19 16 10 C 0.16 6.14 6.10 86.38 0.53 6.67 16 11 N -0.75 -38.02 5.60 -343.45 -1.92 -39.94 16 12 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 13 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 14 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 15 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 16 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 C -0.12 -2.28 7.38 31.12 0.23 -2.05 16 21 C -0.11 -0.22 5.56 31.56 0.18 -0.04 16 22 C -0.55 -2.15 7.65 72.86 0.56 -1.60 16 23 S 2.54 46.62 6.47 -56.49 -0.37 46.25 16 24 O -1.02 -28.96 18.14 -127.79 -2.32 -31.28 16 25 O -1.00 -25.69 18.15 -127.79 -2.32 -28.01 16 26 N -1.09 -19.83 5.65 -151.94 -0.86 -20.69 16 27 H 0.06 0.74 8.05 -2.39 -0.02 0.72 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 1.10 5.83 -2.39 -0.01 1.09 16 30 H 0.15 -0.10 8.08 -2.39 -0.02 -0.12 16 31 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.41 4.73 8.70 -92.71 -0.81 3.92 16 33 H 0.09 2.18 7.50 -2.38 -0.02 2.16 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 2.41 7.90 -2.39 -0.02 2.39 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.02 0.63 7.85 -2.38 -0.02 0.61 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16 40 H 0.25 15.05 8.31 -92.70 -0.77 14.27 16 41 H 0.10 1.92 8.10 -2.39 -0.02 1.90 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.11 0.09 7.77 -2.38 -0.02 0.07 16 44 H 0.16 -0.90 7.73 -2.39 -0.02 -0.92 16 45 H 0.17 -0.20 8.14 -2.38 -0.02 -0.22 16 46 H 0.17 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.43 10.07 6.94 -93.00 -0.65 9.42 16 Total: -1.00 -89.76 386.56 -4.43 -94.18 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -1.16 Total: 28.72 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.55 Total: -9.66 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -4.82 Total: -134.23 kcal Atomic # 8 Polarization: -69.08 SS G_CDS: -4.67 Total: -73.75 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 16 Polarization: 46.62 SS G_CDS: -0.37 Total: 46.25 kcal Total: -89.76 -4.43 -94.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674604976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.021 kcal (2) G-P(sol) polarization free energy of solvation -89.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds