Wall clock time and date at job start Wed Apr 1 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34772 * 120.00315 * 2 1 4 4 O 1.21277 * 120.00312 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99757 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47364 * 180.02562 * 5 3 2 7 7 C 1.53003 * 108.58124 * 61.54171 * 6 5 3 8 8 C 1.53200 * 108.64920 * 179.37564 * 6 5 3 9 9 C 1.55560 * 106.23809 * 148.65827 * 8 6 5 10 10 S 1.83897 * 99.64496 * 323.00975 * 9 8 6 11 11 O 1.42103 * 111.46874 * 284.14459 * 10 9 8 12 12 O 1.42102 * 111.46638 * 144.08497 * 10 9 8 13 13 N 1.46450 * 108.64265 * 303.54755 * 6 5 3 14 14 C 1.46506 * 119.99797 * 179.97438 * 2 1 3 15 15 C 1.53785 * 113.61338 * 37.49868 * 14 2 1 16 16 C 1.53784 * 87.08127 * 220.01902 * 15 14 2 17 17 N 1.46500 * 113.61118 * 270.88689 * 16 15 14 18 18 C 1.36939 * 119.99628 * 252.49533 * 17 16 15 19 19 H 1.07999 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00175 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47288 * 59.99869 * 22 20 18 24 24 H 1.48506 * 109.47319 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47040 * 299.99785 * 22 20 18 26 26 C 1.53783 * 113.61473 * 300.00203 * 14 2 1 27 27 H 1.09002 * 109.46823 * 90.00163 * 1 2 3 28 28 H 1.08997 * 109.47089 * 210.00058 * 1 2 3 29 29 H 1.08995 * 109.46902 * 330.00110 * 1 2 3 30 30 H 1.09003 * 109.47149 * 59.99770 * 5 3 2 31 31 H 1.09003 * 109.47508 * 299.99992 * 5 3 2 32 32 H 1.09000 * 109.46509 * 303.46053 * 7 6 5 33 33 H 1.08998 * 109.46853 * 63.45675 * 7 6 5 34 34 H 1.08998 * 109.46994 * 183.46051 * 7 6 5 35 35 H 1.08995 * 110.09880 * 267.85096 * 8 6 5 36 36 H 1.09001 * 110.09965 * 29.40584 * 8 6 5 37 37 H 1.09001 * 111.37053 * 205.40801 * 9 8 6 38 38 H 1.09007 * 111.36807 * 80.61641 * 9 8 6 39 39 H 0.97000 * 126.08549 * 57.20322 * 13 6 5 40 40 H 1.09001 * 112.85102 * 168.80402 * 14 2 1 41 41 H 1.08994 * 113.61672 * 334.56456 * 15 14 2 42 42 H 1.09001 * 113.61471 * 105.47310 * 15 14 2 43 43 H 1.08995 * 113.68992 * 139.99379 * 16 15 14 44 44 H 0.96998 * 120.00037 * 72.49512 * 17 16 15 45 45 H 0.96998 * 120.00063 * 180.02562 * 21 20 18 46 46 H 1.08998 * 113.60904 * 254.52968 * 26 14 2 47 47 H 1.08997 * 113.61188 * 25.34709 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3797 3.6352 -0.0011 7 6 3.2218 3.5561 -1.2761 8 6 1.5948 4.9507 -0.0175 9 6 2.4609 5.9837 0.7588 10 16 3.1451 4.8895 2.0689 11 8 2.1749 4.6041 3.0672 12 8 4.4816 5.2438 2.3968 13 7 3.2668 3.4932 1.1555 14 6 2.1976 -1.2688 0.0006 15 6 1.5374 -2.3616 -0.8567 16 6 1.9129 -3.3525 0.2578 17 7 3.2396 -3.9503 0.0889 18 6 3.3568 -5.2618 -0.2873 19 1 2.4711 -5.8553 -0.4599 20 6 4.6139 -5.8285 -0.4468 21 7 5.6933 -5.1054 -0.2360 22 14 4.7738 -7.6177 -0.9592 23 1 4.1213 -7.8149 -2.2786 24 1 6.2111 -7.9777 -1.0585 25 1 4.1160 -8.4830 0.0526 26 6 1.8954 -2.1540 1.2212 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 0.7585 2.5301 0.8891 31 1 0.7592 2.5298 -0.8908 32 1 3.7111 2.5835 -1.3285 33 1 2.5776 3.6861 -2.1456 34 1 3.9767 4.3423 -1.2623 35 1 1.4443 5.2843 -1.0442 36 1 0.6330 4.8192 0.4781 37 1 1.8465 6.7769 1.1847 38 1 3.2517 6.3919 0.1292 39 1 3.8259 2.7263 1.3560 40 1 3.2625 -1.1428 -0.1945 41 1 0.4625 -2.2300 -0.9799 42 1 2.0528 -2.5483 -1.7988 43 1 1.1390 -4.0914 0.4658 44 1 4.0351 -3.4172 0.2435 45 1 6.5717 -5.5012 -0.3478 46 1 2.6998 -2.1731 1.9565 47 1 0.9189 -1.9646 1.6669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677441581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:26 Heat of formation + Delta-G solvation = -53.672134 kcal Electronic energy + Delta-G solvation = -29325.483047 eV Core-core repulsion = 25251.231204 eV Total energy + Delta-G solvation = -4074.251843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.63539 -38.99894 -37.50569 -37.16462 -36.06928 -34.89057 -33.03529 -32.10126 -30.90270 -29.79012 -28.12095 -27.11017 -25.16495 -24.98337 -24.11851 -22.71536 -20.92224 -19.76450 -19.45200 -18.28264 -17.79781 -17.45317 -16.85063 -16.80255 -16.20754 -15.97535 -15.81541 -15.10827 -14.90248 -14.79053 -14.09921 -14.00571 -13.73338 -13.58340 -13.38271 -13.17926 -12.92314 -12.73522 -12.67180 -12.36881 -12.33588 -12.28293 -12.19896 -11.99718 -11.92082 -11.74321 -11.52094 -11.46011 -11.15127 -10.86913 -10.86281 -10.77348 -10.26868 -10.20680 -9.81223 -9.69862 -9.63588 -9.46095 -8.92049 -8.43975 -7.02793 -5.80236 -3.10775 0.00072 2.37367 2.62938 3.01147 3.34844 3.42197 3.46454 3.48040 3.56901 3.84077 4.08487 4.24311 4.52027 4.54806 4.55912 4.77571 4.92278 4.96763 5.05341 5.09573 5.11986 5.15152 5.18694 5.31112 5.34910 5.38126 5.42117 5.50625 5.58730 5.67263 5.83074 5.85318 5.97365 6.05911 6.16492 6.29948 6.40150 6.54514 6.68345 6.76230 6.99408 7.12698 7.51221 7.67102 8.23702 8.37776 9.48386 10.04764 10.38760 11.41714 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002366 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.992487 B =11830.848480 C =12344.907900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.515 3.485 4 O -0.534 6.534 5 C -0.148 4.148 6 C 0.158 3.842 7 C -0.170 4.170 8 C -0.117 4.117 9 C -0.593 4.593 10 S 2.564 3.436 11 O -0.956 6.956 12 O -0.961 6.961 13 N -1.077 6.077 14 C 0.124 3.876 15 C -0.181 4.181 16 C 0.173 3.827 17 N -0.705 5.705 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.169 4.169 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.444 0.556 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.386 0.614 45 H 0.257 0.743 46 H 0.070 0.930 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 24.302 -1.389 28.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.333 5.333 3 C 0.304 3.696 4 O -0.412 6.412 5 C -0.190 4.190 6 C 0.067 3.933 7 C -0.229 4.229 8 C -0.156 4.156 9 C -0.723 4.723 10 S 2.658 3.342 11 O -0.945 6.945 12 O -0.950 6.950 13 N -0.848 5.848 14 C 0.022 3.978 15 C -0.224 4.224 16 C 0.059 3.941 17 N -0.344 5.344 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.209 4.209 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.290 0.710 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.686 24.276 -0.431 27.872 hybrid contribution 0.210 -0.982 -0.921 1.362 sum -13.476 23.294 -1.351 26.946 Atomic orbital electron populations 1.21770 0.80132 1.03215 1.01760 1.48002 1.06713 1.06330 1.72246 1.20421 0.88130 0.85127 0.75966 1.90591 1.13851 1.86898 1.49820 1.22245 0.99023 0.92747 1.04964 1.20262 0.90144 0.93748 0.89169 1.22529 1.00125 1.05627 0.94570 1.22518 0.98431 0.90065 1.04589 1.30772 1.11922 1.11476 1.18178 1.06541 0.75224 0.76932 0.75505 1.93653 1.63097 1.82416 1.55332 1.93619 1.35300 1.82883 1.83240 1.55140 1.57089 1.35561 1.36984 1.22768 0.97751 0.79602 0.97671 1.24296 0.99320 0.97768 1.00967 1.20899 0.89894 0.91293 0.91985 1.42204 1.00975 1.10458 1.80737 1.19214 0.92317 0.87263 1.39024 0.91010 1.24792 0.95405 0.98319 1.02204 1.69660 0.97140 1.35789 1.55096 0.86239 0.76652 0.84675 0.78401 1.21205 1.21652 1.21180 1.23963 1.01458 0.97817 0.97691 0.92545 0.90470 0.91311 0.88018 0.87936 0.88687 0.92191 0.92228 0.86861 0.88403 0.84254 0.84013 0.71031 0.86353 0.91042 0.91008 0.91476 0.77926 0.93276 0.91115 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.85 59.85 0.53 1.16 16 2 N -0.60 -7.49 3.08 -172.99 -0.53 -8.02 16 3 C 0.52 6.45 7.13 -10.99 -0.08 6.37 16 4 O -0.53 -8.45 11.28 5.56 0.06 -8.38 16 5 C -0.15 -1.17 3.24 -27.88 -0.09 -1.26 16 6 C 0.16 1.23 0.83 -131.74 -0.11 1.12 16 7 C -0.17 -1.44 8.26 37.16 0.31 -1.14 16 8 C -0.12 -0.50 5.56 -25.27 -0.14 -0.64 16 9 C -0.59 -2.72 7.65 38.52 0.29 -2.43 16 10 S 2.56 24.68 6.47 -107.50 -0.70 23.99 16 11 O -0.96 -12.06 18.14 -57.37 -1.04 -13.10 16 12 O -0.96 -13.06 18.14 -57.37 -1.04 -14.10 16 13 N -1.08 -11.13 5.67 0.60 0.00 -11.13 16 14 C 0.12 1.99 4.08 -67.11 -0.27 1.72 16 15 C -0.18 -2.96 7.31 -25.92 -0.19 -3.15 16 16 C 0.17 3.31 4.56 -67.11 -0.31 3.00 16 17 N -0.71 -17.52 5.31 -52.64 -0.28 -17.80 16 18 C -0.25 -6.79 9.97 -15.06 -0.15 -6.94 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 22 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C -0.17 -2.76 7.36 -25.92 -0.19 -2.95 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.65 6.34 -51.93 -0.33 0.32 16 29 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 30 H 0.10 0.69 7.37 -51.93 -0.38 0.31 16 31 H 0.10 0.53 8.11 -51.93 -0.42 0.11 16 32 H 0.09 1.14 5.50 -51.93 -0.29 0.85 16 33 H 0.06 0.38 7.96 -51.93 -0.41 -0.03 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.26 7.65 -51.93 -0.40 -0.14 16 36 H 0.10 0.29 7.81 -51.93 -0.41 -0.12 16 37 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.44 5.49 7.03 -40.37 -0.28 5.21 16 40 H 0.12 2.30 7.23 -51.93 -0.38 1.93 16 41 H 0.07 0.96 6.72 -51.93 -0.35 0.61 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.39 10.35 7.90 -40.82 -0.32 10.03 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.08 1.05 6.92 -51.93 -0.36 0.69 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -37.34 378.40 -9.78 -47.11 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -7.16 Total: 11.49 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.49 Total: -5.53 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.08 Total: -64.39 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -2.02 Total: -35.59 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 24.68 SS G_CDS: -0.70 Total: 23.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.34 -9.78 -47.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677441581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.560 kcal (2) G-P(sol) polarization free energy of solvation -37.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds