Wall clock time and date at job start Wed Apr 1 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34772 * 120.00315 * 2 1 4 4 O 1.21277 * 120.00312 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99757 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47364 * 180.02562 * 5 3 2 7 7 C 1.53003 * 108.58124 * 61.54171 * 6 5 3 8 8 C 1.53200 * 108.64920 * 179.37564 * 6 5 3 9 9 C 1.55560 * 106.23809 * 148.65827 * 8 6 5 10 10 S 1.83897 * 99.64496 * 323.00975 * 9 8 6 11 11 O 1.42103 * 111.46874 * 284.14459 * 10 9 8 12 12 O 1.42102 * 111.46638 * 144.08497 * 10 9 8 13 13 N 1.46450 * 108.64265 * 303.54755 * 6 5 3 14 14 C 1.46506 * 119.99797 * 179.97438 * 2 1 3 15 15 C 1.53785 * 113.61338 * 37.49868 * 14 2 1 16 16 C 1.53784 * 87.08127 * 220.01902 * 15 14 2 17 17 N 1.46500 * 113.61118 * 270.88689 * 16 15 14 18 18 C 1.36939 * 119.99628 * 252.49533 * 17 16 15 19 19 H 1.07999 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00175 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47288 * 59.99869 * 22 20 18 24 24 H 1.48506 * 109.47319 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47040 * 299.99785 * 22 20 18 26 26 C 1.53783 * 113.61473 * 300.00203 * 14 2 1 27 27 H 1.09002 * 109.46823 * 90.00163 * 1 2 3 28 28 H 1.08997 * 109.47089 * 210.00058 * 1 2 3 29 29 H 1.08995 * 109.46902 * 330.00110 * 1 2 3 30 30 H 1.09003 * 109.47149 * 59.99770 * 5 3 2 31 31 H 1.09003 * 109.47508 * 299.99992 * 5 3 2 32 32 H 1.09000 * 109.46509 * 303.46053 * 7 6 5 33 33 H 1.08998 * 109.46853 * 63.45675 * 7 6 5 34 34 H 1.08998 * 109.46994 * 183.46051 * 7 6 5 35 35 H 1.08995 * 110.09880 * 267.85096 * 8 6 5 36 36 H 1.09001 * 110.09965 * 29.40584 * 8 6 5 37 37 H 1.09001 * 111.37053 * 205.40801 * 9 8 6 38 38 H 1.09007 * 111.36807 * 80.61641 * 9 8 6 39 39 H 0.97000 * 126.08549 * 57.20322 * 13 6 5 40 40 H 1.09001 * 112.85102 * 168.80402 * 14 2 1 41 41 H 1.08994 * 113.61672 * 334.56456 * 15 14 2 42 42 H 1.09001 * 113.61471 * 105.47310 * 15 14 2 43 43 H 1.08995 * 113.68992 * 139.99379 * 16 15 14 44 44 H 0.96998 * 120.00037 * 72.49512 * 17 16 15 45 45 H 0.96998 * 120.00063 * 180.02562 * 21 20 18 46 46 H 1.08998 * 113.60904 * 254.52968 * 26 14 2 47 47 H 1.08997 * 113.61188 * 25.34709 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3797 3.6352 -0.0011 7 6 3.2218 3.5561 -1.2761 8 6 1.5948 4.9507 -0.0175 9 6 2.4609 5.9837 0.7588 10 16 3.1451 4.8895 2.0689 11 8 2.1749 4.6041 3.0672 12 8 4.4816 5.2438 2.3968 13 7 3.2668 3.4932 1.1555 14 6 2.1976 -1.2688 0.0006 15 6 1.5374 -2.3616 -0.8567 16 6 1.9129 -3.3525 0.2578 17 7 3.2396 -3.9503 0.0889 18 6 3.3568 -5.2618 -0.2873 19 1 2.4711 -5.8553 -0.4599 20 6 4.6139 -5.8285 -0.4468 21 7 5.6933 -5.1054 -0.2360 22 14 4.7738 -7.6177 -0.9592 23 1 4.1213 -7.8149 -2.2786 24 1 6.2111 -7.9777 -1.0585 25 1 4.1160 -8.4830 0.0526 26 6 1.8954 -2.1540 1.2212 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 0.7585 2.5301 0.8891 31 1 0.7592 2.5298 -0.8908 32 1 3.7111 2.5835 -1.3285 33 1 2.5776 3.6861 -2.1456 34 1 3.9767 4.3423 -1.2623 35 1 1.4443 5.2843 -1.0442 36 1 0.6330 4.8192 0.4781 37 1 1.8465 6.7769 1.1847 38 1 3.2517 6.3919 0.1292 39 1 3.8259 2.7263 1.3560 40 1 3.2625 -1.1428 -0.1945 41 1 0.4625 -2.2300 -0.9799 42 1 2.0528 -2.5483 -1.7988 43 1 1.1390 -4.0914 0.4658 44 1 4.0351 -3.4172 0.2435 45 1 6.5717 -5.5012 -0.3478 46 1 2.6998 -2.1731 1.9565 47 1 0.9189 -1.9646 1.6669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677441581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:25 Heat of formation + Delta-G solvation = -85.038761 kcal Electronic energy + Delta-G solvation = -29326.843206 eV Core-core repulsion = 25251.231204 eV Total energy + Delta-G solvation = -4075.612002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.56559 -40.07867 -38.44759 -37.99938 -36.90012 -36.16633 -34.79987 -32.61669 -32.01569 -31.29913 -28.84946 -27.91439 -26.56777 -26.18356 -25.32997 -24.08687 -21.62041 -20.49518 -20.44745 -19.66078 -19.29896 -18.51974 -17.87710 -17.48007 -17.20094 -16.78055 -16.68478 -16.62072 -15.94694 -15.73339 -15.50726 -15.14051 -14.75861 -14.55395 -14.18276 -14.05768 -13.99432 -13.66306 -13.45835 -13.36128 -13.22931 -13.20067 -13.17766 -13.06661 -13.03069 -12.77210 -12.70003 -12.50905 -12.38315 -12.22324 -12.07601 -11.81403 -11.75548 -11.64005 -11.40409 -11.19430 -10.91200 -10.48116 -10.32030 -9.46835 -9.05821 -7.96960 -5.27519 -0.64952 1.45806 1.49626 1.55780 1.68289 1.74909 2.11086 2.54066 2.72505 3.07351 3.34800 3.35823 3.53242 3.62617 3.70623 3.85239 3.87265 3.92377 4.03897 4.26788 4.29748 4.32830 4.35945 4.53548 4.60774 4.71089 4.72678 4.76870 4.80494 4.81846 4.90495 4.95029 4.97471 5.06232 5.10505 5.14004 5.23916 5.29891 5.33764 5.50542 5.62496 5.76062 6.22596 6.24647 6.57814 7.28969 7.32534 8.05118 8.26934 9.26428 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002366 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.992487 B =11830.848480 C =12344.907900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.604 5.604 3 C 0.501 3.499 4 O -0.579 6.579 5 C -0.140 4.140 6 C 0.146 3.854 7 C -0.170 4.170 8 C -0.113 4.113 9 C -0.548 4.548 10 S 2.544 3.456 11 O -0.996 6.996 12 O -1.018 7.018 13 N -1.091 6.091 14 C 0.132 3.868 15 C -0.158 4.158 16 C 0.152 3.848 17 N -0.724 5.724 18 C -0.244 4.244 19 H 0.084 0.916 20 C -0.080 4.080 21 N -0.974 5.974 22 Si 0.978 3.022 23 H -0.275 1.275 24 H -0.299 1.299 25 H -0.275 1.275 26 C -0.152 4.152 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.177 0.823 38 H 0.161 0.839 39 H 0.430 0.570 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.370 0.630 45 H 0.251 0.749 46 H 0.042 0.958 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.216 26.413 -2.998 32.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.335 5.335 3 C 0.291 3.709 4 O -0.459 6.459 5 C -0.181 4.181 6 C 0.056 3.944 7 C -0.228 4.228 8 C -0.152 4.152 9 C -0.683 4.683 10 S 2.644 3.356 11 O -0.986 6.986 12 O -1.007 7.007 13 N -0.858 5.858 14 C 0.027 3.973 15 C -0.199 4.199 16 C 0.041 3.959 17 N -0.362 5.362 18 C -0.375 4.375 19 H 0.102 0.898 20 C -0.272 4.272 21 N -0.624 5.624 22 Si 0.807 3.193 23 H -0.201 1.201 24 H -0.225 1.225 25 H -0.201 1.201 26 C -0.192 4.192 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.168 0.832 36 H 0.141 0.859 37 H 0.194 0.806 38 H 0.179 0.821 39 H 0.271 0.729 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.201 0.799 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.415 26.389 -2.004 32.241 hybrid contribution 1.566 -1.551 -0.472 2.254 sum -16.849 24.838 -2.476 30.115 Atomic orbital electron populations 1.22139 0.76993 1.05021 1.03606 1.48056 1.08469 1.04794 1.72184 1.21438 0.88011 0.86617 0.74822 1.90601 1.16251 1.87624 1.51446 1.22353 0.98853 0.89364 1.07574 1.20659 0.89988 0.96085 0.87644 1.22503 1.00777 1.03210 0.96341 1.22728 0.98317 0.87174 1.06978 1.30579 1.12474 1.10709 1.14567 1.06925 0.74146 0.77728 0.76775 1.93590 1.63089 1.83531 1.58356 1.93541 1.38481 1.83736 1.84989 1.55209 1.57403 1.35173 1.37981 1.22180 0.95933 0.81931 0.97230 1.24061 1.01423 0.96119 0.98294 1.21240 0.87558 0.92570 0.94525 1.42414 1.02677 1.09909 1.81203 1.19688 0.92600 0.88360 1.36885 0.89844 1.25677 0.95247 1.02702 1.03571 1.69850 0.97340 1.37613 1.57587 0.85142 0.76037 0.79670 0.78481 1.20066 1.22545 1.20069 1.23840 1.02426 0.96204 0.96748 0.90594 0.90167 0.88152 0.86248 0.83935 0.93020 0.89310 0.92010 0.83151 0.85884 0.80563 0.82111 0.72869 0.91157 0.86776 0.93873 0.90565 0.79873 0.94074 0.93881 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 8.85 127.77 1.13 1.92 16 2 N -0.60 -14.14 3.08 -819.62 -2.53 -16.67 16 3 C 0.50 12.21 7.13 87.66 0.63 12.84 16 4 O -0.58 -19.61 11.28 -3.02 -0.03 -19.65 16 5 C -0.14 -1.72 3.24 29.85 0.10 -1.62 16 6 C 0.15 1.90 0.83 3.68 0.00 1.91 16 7 C -0.17 -2.59 8.26 71.98 0.59 -2.00 16 8 C -0.11 -0.33 5.56 31.54 0.18 -0.15 16 9 C -0.55 -2.55 7.65 72.86 0.56 -1.99 16 10 S 2.54 48.54 6.47 -56.49 -0.37 48.18 16 11 O -1.00 -25.21 18.14 -127.81 -2.32 -27.52 16 12 O -1.02 -29.52 18.14 -127.81 -2.32 -31.84 16 13 N -1.09 -22.92 5.67 -152.02 -0.86 -23.78 16 14 C 0.13 4.31 4.08 45.52 0.19 4.49 16 15 C -0.16 -5.03 7.31 31.12 0.23 -4.81 16 16 C 0.15 5.83 4.56 45.52 0.21 6.04 16 17 N -0.72 -37.49 5.31 -320.44 -1.70 -39.19 16 18 C -0.24 -13.65 9.97 84.03 0.84 -12.82 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 21 N -0.97 -61.81 13.06 21.65 0.28 -61.53 16 22 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 26 C -0.15 -4.98 7.36 31.12 0.23 -4.75 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.97 6.34 -2.39 -0.02 0.96 16 29 H 0.10 0.65 6.44 -2.39 -0.02 0.63 16 30 H 0.12 1.09 7.37 -2.39 -0.02 1.07 16 31 H 0.14 0.62 8.11 -2.39 -0.02 0.60 16 32 H 0.05 1.29 5.50 -2.39 -0.01 1.27 16 33 H 0.09 0.79 7.96 -2.39 -0.02 0.77 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.15 -0.48 7.65 -2.39 -0.02 -0.49 16 36 H 0.12 -0.13 7.81 -2.39 -0.02 -0.14 16 37 H 0.18 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.16 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.43 11.79 7.03 -93.00 -0.65 11.13 16 40 H 0.07 3.01 7.23 -2.39 -0.02 2.99 16 41 H 0.11 2.66 6.72 -2.39 -0.02 2.65 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 44 H 0.37 21.24 7.90 -92.71 -0.73 20.51 16 45 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.11 2.85 6.92 -2.39 -0.02 2.84 16 Total: -1.00 -91.63 378.40 -2.86 -94.49 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.38 Total: 33.96 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 5.34 Total: -5.16 kcal Atomic # 7 Polarization: -136.36 SS G_CDS: -4.81 Total: -141.17 kcal Atomic # 8 Polarization: -74.34 SS G_CDS: -4.67 Total: -79.02 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.37 Total: 48.18 kcal Total: -91.63 -2.86 -94.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677441581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.449 kcal (2) G-P(sol) polarization free energy of solvation -91.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds