Wall clock time and date at job start Wed Apr 1 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 120.00151 * 2 1 4 4 O 1.21280 * 119.99673 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99735 * 359.97438 * 3 2 1 6 6 C 1.53005 * 109.46870 * 179.97438 * 5 3 2 7 7 C 1.53000 * 108.58215 * 297.99915 * 6 5 3 8 8 C 1.53196 * 108.64649 * 179.97438 * 6 5 3 9 9 C 1.55561 * 106.24038 * 211.51820 * 8 6 5 10 10 S 1.83902 * 99.68672 * 36.96318 * 9 8 6 11 11 O 1.42102 * 111.46455 * 75.88236 * 10 9 8 12 12 O 1.42106 * 111.46461 * 215.93428 * 10 9 8 13 13 N 1.46447 * 108.50480 * 55.91807 * 6 5 3 14 14 C 1.46496 * 119.99674 * 179.97438 * 2 1 3 15 15 C 1.53788 * 113.61517 * 39.13920 * 14 2 1 16 16 C 1.53953 * 87.01943 * 220.04392 * 15 14 2 17 17 N 1.46499 * 113.53957 * 270.80872 * 16 15 14 18 18 C 1.36939 * 120.00289 * 252.49416 * 17 16 15 19 19 H 1.08003 * 119.99549 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99901 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00019 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99764 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47136 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47215 * 120.00086 * 22 20 18 25 25 H 1.48503 * 109.46998 * 240.00208 * 22 20 18 26 26 C 1.53776 * 87.11288 * 25.36201 * 16 15 14 27 27 H 1.09003 * 109.47041 * 89.99849 * 1 2 3 28 28 H 1.08995 * 109.47329 * 210.00184 * 1 2 3 29 29 H 1.09001 * 109.47070 * 329.99775 * 1 2 3 30 30 H 1.08999 * 109.47521 * 60.00493 * 5 3 2 31 31 H 1.08998 * 109.47137 * 299.99748 * 5 3 2 32 32 H 1.09004 * 109.47285 * 302.00229 * 7 6 5 33 33 H 1.09006 * 109.47023 * 61.99922 * 7 6 5 34 34 H 1.08997 * 109.47511 * 181.99904 * 7 6 5 35 35 H 1.08998 * 110.10169 * 92.32550 * 8 6 5 36 36 H 1.08997 * 110.10130 * 330.71076 * 8 6 5 37 37 H 1.09002 * 111.37018 * 154.59380 * 9 8 6 38 38 H 1.08999 * 111.36676 * 279.33587 * 9 8 6 39 39 H 0.97004 * 126.08611 * 302.75283 * 13 6 5 40 40 H 1.09000 * 112.85164 * 170.33185 * 14 2 1 41 41 H 1.08995 * 113.61200 * 334.56297 * 15 14 2 42 42 H 1.08997 * 113.61131 * 105.46928 * 15 14 2 43 43 H 1.08999 * 113.74423 * 139.94106 * 16 15 14 44 44 H 0.97005 * 119.99489 * 72.50207 * 17 16 15 45 45 H 0.97005 * 119.99706 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.61607 * 220.08781 * 26 16 15 47 47 H 1.09006 * 113.61623 * 89.18508 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3797 3.6352 0.0002 7 6 3.2130 3.5633 1.2813 8 6 1.5948 4.9508 -0.0011 9 6 2.4661 5.9765 -0.7812 10 16 3.1604 4.8709 -2.0764 11 8 2.1978 4.5764 -3.0793 12 8 4.4992 5.2230 -2.3975 13 7 3.2742 3.4827 -1.1493 14 6 2.1974 -1.2687 0.0006 15 6 1.5589 -2.3491 -0.8884 16 6 1.9073 -3.3557 0.2232 17 7 3.2377 -3.9515 0.0771 18 6 3.3637 -5.2578 -0.3137 19 1 2.4823 -5.8488 -0.5146 20 6 4.6244 -5.8221 -0.4527 21 7 5.6984 -5.1018 -0.2084 22 14 4.7963 -7.6039 -0.9865 23 1 3.4481 -8.1901 -1.1964 24 1 5.5677 -7.6688 -2.2537 25 1 5.5097 -8.3696 0.0671 26 6 1.8673 -2.1702 1.2019 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 0.7585 2.5303 0.8892 31 1 0.7592 2.5298 -0.8908 32 1 2.5521 3.6010 2.1473 33 1 3.7778 2.6311 1.2956 34 1 3.9029 4.4065 1.3139 35 1 1.4373 5.2940 1.0214 36 1 0.6367 4.8149 -0.5029 37 1 1.8545 6.7657 -1.2186 38 1 3.2520 6.3913 -0.1500 39 1 3.8339 2.7137 -1.3397 40 1 3.2666 -1.1404 -0.1682 41 1 0.4873 -2.2155 -1.0363 42 1 2.0975 -2.5223 -1.8200 43 1 1.1290 -4.0971 0.4035 44 1 4.0293 -3.4205 0.2573 45 1 6.5793 -5.4962 -0.3051 46 1 2.6545 -2.1993 1.9553 47 1 0.8801 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677441582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:30 Heat of formation + Delta-G solvation = -54.182913 kcal Electronic energy + Delta-G solvation = -29328.728419 eV Core-core repulsion = 25254.454427 eV Total energy + Delta-G solvation = -4074.273992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.62988 -38.99456 -37.49884 -37.15527 -36.05832 -34.88937 -33.03630 -32.09552 -30.90197 -29.79070 -28.12206 -27.10589 -25.17870 -24.98292 -24.12268 -22.71379 -20.92017 -19.75833 -19.45419 -18.28549 -17.79110 -17.46092 -16.85806 -16.77756 -16.21036 -15.96587 -15.77763 -15.11307 -14.93775 -14.78885 -14.19767 -13.89221 -13.73102 -13.56202 -13.41572 -13.15350 -12.89546 -12.75500 -12.68714 -12.38814 -12.29753 -12.26695 -12.18837 -11.99789 -11.89605 -11.79634 -11.58292 -11.43692 -11.15027 -10.89332 -10.85870 -10.76609 -10.26691 -10.14368 -9.81992 -9.70586 -9.62816 -9.46225 -8.92914 -8.44219 -7.02657 -5.80631 -3.10990 0.00937 2.38205 2.63138 3.01230 3.35701 3.41778 3.47040 3.49769 3.57307 3.84284 4.08815 4.24401 4.51229 4.54795 4.57818 4.77759 4.88805 4.97911 5.04495 5.10975 5.11692 5.14869 5.18664 5.31073 5.34878 5.38019 5.42049 5.50298 5.59307 5.64900 5.82823 5.84816 5.97185 6.05337 6.16218 6.29162 6.38926 6.54097 6.68448 6.76319 6.99439 7.13826 7.51333 7.68158 8.23917 8.37364 9.48249 10.04479 10.38385 11.41448 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.002424 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.254238 B =11546.378419 C =12231.905273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.516 3.484 4 O -0.534 6.534 5 C -0.148 4.148 6 C 0.158 3.842 7 C -0.169 4.169 8 C -0.116 4.116 9 C -0.593 4.593 10 S 2.564 3.436 11 O -0.956 6.956 12 O -0.961 6.961 13 N -1.077 6.077 14 C 0.124 3.876 15 C -0.183 4.183 16 C 0.173 3.827 17 N -0.706 5.706 18 C -0.246 4.246 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.929 5.929 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.168 4.168 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.445 0.555 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.070 0.930 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.677 24.317 3.856 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.333 5.333 3 C 0.304 3.696 4 O -0.412 6.412 5 C -0.190 4.190 6 C 0.067 3.933 7 C -0.227 4.227 8 C -0.156 4.156 9 C -0.724 4.724 10 S 2.658 3.342 11 O -0.945 6.945 12 O -0.950 6.950 13 N -0.848 5.848 14 C 0.022 3.978 15 C -0.225 4.225 16 C 0.059 3.941 17 N -0.344 5.344 18 C -0.377 4.377 19 H 0.091 0.909 20 C -0.208 4.208 21 N -0.576 5.576 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.208 4.208 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.290 0.710 40 H 0.137 0.863 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.791 24.282 2.805 28.065 hybrid contribution 0.230 -0.962 0.344 1.048 sum -13.560 23.319 3.149 27.159 Atomic orbital electron populations 1.21769 0.80136 1.03038 1.01926 1.47994 1.06708 1.06330 1.72261 1.20421 0.88126 0.85122 0.75940 1.90586 1.13858 1.86899 1.49862 1.22258 0.99021 0.92764 1.04953 1.20266 0.90022 0.93716 0.89295 1.22501 1.00460 1.05189 0.94563 1.22507 0.98406 0.90155 1.04504 1.30775 1.11957 1.11646 1.17999 1.06552 0.75237 0.76978 0.75480 1.93654 1.63496 1.82211 1.55110 1.93620 1.35101 1.82933 1.83378 1.55163 1.56722 1.35715 1.37204 1.22766 0.97826 0.79601 0.97610 1.24332 0.99476 0.97855 1.00806 1.20935 0.89886 0.91294 0.91955 1.42222 1.00989 1.11079 1.80115 1.19303 0.92365 0.87655 1.38342 0.90902 1.24792 0.95427 0.98377 1.02180 1.69679 0.97196 1.35755 1.55002 0.86097 0.77484 0.84564 0.77877 1.20496 1.21793 1.21812 1.23950 1.01270 0.97804 0.97781 0.92473 0.90483 0.91381 0.87947 0.88041 0.92158 0.88691 0.92323 0.86875 0.88394 0.84257 0.84031 0.70988 0.86334 0.91055 0.90971 0.91461 0.77941 0.93387 0.91135 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.84 59.85 0.53 1.16 16 2 N -0.60 -7.49 3.08 -173.00 -0.53 -8.03 16 3 C 0.52 6.46 7.16 -10.99 -0.08 6.38 16 4 O -0.53 -8.46 11.25 5.56 0.06 -8.39 16 5 C -0.15 -1.17 3.24 -27.88 -0.09 -1.26 16 6 C 0.16 1.23 0.83 -131.74 -0.11 1.12 16 7 C -0.17 -1.40 8.14 37.16 0.30 -1.10 16 8 C -0.12 -0.50 5.56 -25.27 -0.14 -0.64 16 9 C -0.59 -2.75 7.65 38.52 0.29 -2.46 16 10 S 2.56 25.08 6.48 -107.50 -0.70 24.38 16 11 O -0.96 -12.28 18.14 -57.37 -1.04 -13.32 16 12 O -0.96 -13.21 18.14 -57.37 -1.04 -14.25 16 13 N -1.08 -11.29 5.65 0.59 0.00 -11.28 16 14 C 0.12 1.99 4.08 -67.12 -0.27 1.72 16 15 C -0.18 -3.04 7.34 -25.82 -0.19 -3.23 16 16 C 0.17 3.30 4.57 -67.03 -0.31 2.99 16 17 N -0.71 -17.50 5.31 -52.55 -0.28 -17.78 16 18 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C -0.17 -2.66 7.36 -25.92 -0.19 -2.85 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.63 6.33 -51.93 -0.33 0.30 16 29 H 0.07 0.37 6.44 -51.93 -0.33 0.04 16 30 H 0.10 0.51 7.40 -51.93 -0.38 0.12 16 31 H 0.10 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.06 0.38 8.11 -51.93 -0.42 -0.04 16 33 H 0.09 1.12 5.65 -51.93 -0.29 0.83 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.25 7.75 -51.93 -0.40 -0.15 16 36 H 0.10 0.29 7.80 -51.93 -0.40 -0.11 16 37 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.44 5.59 6.97 -40.35 -0.28 5.31 16 40 H 0.12 2.31 7.21 -51.93 -0.37 1.94 16 41 H 0.07 0.98 6.81 -51.93 -0.35 0.63 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.39 10.32 7.90 -40.82 -0.32 10.00 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.00 6.82 -51.93 -0.35 0.64 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -37.48 378.58 -9.80 -47.28 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -7.18 Total: 11.32 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.50 Total: -5.49 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.08 Total: -64.52 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -2.02 Total: -35.97 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 25.08 SS G_CDS: -0.70 Total: 24.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.48 -9.80 -47.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677441582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.906 kcal (2) G-P(sol) polarization free energy of solvation -37.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds