Wall clock time and date at job start Wed Apr 1 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 120.00151 * 2 1 4 4 O 1.21280 * 119.99673 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99735 * 359.97438 * 3 2 1 6 6 C 1.53005 * 109.46870 * 179.97438 * 5 3 2 7 7 C 1.53000 * 108.58215 * 297.99915 * 6 5 3 8 8 C 1.53196 * 108.64649 * 179.97438 * 6 5 3 9 9 C 1.55561 * 106.24038 * 211.51820 * 8 6 5 10 10 S 1.83902 * 99.68672 * 36.96318 * 9 8 6 11 11 O 1.42102 * 111.46455 * 75.88236 * 10 9 8 12 12 O 1.42106 * 111.46461 * 215.93428 * 10 9 8 13 13 N 1.46447 * 108.50480 * 55.91807 * 6 5 3 14 14 C 1.46496 * 119.99674 * 179.97438 * 2 1 3 15 15 C 1.53788 * 113.61517 * 39.13920 * 14 2 1 16 16 C 1.53953 * 87.01943 * 220.04392 * 15 14 2 17 17 N 1.46499 * 113.53957 * 270.80872 * 16 15 14 18 18 C 1.36939 * 120.00289 * 252.49416 * 17 16 15 19 19 H 1.08003 * 119.99549 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99901 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00019 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99764 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47136 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47215 * 120.00086 * 22 20 18 25 25 H 1.48503 * 109.46998 * 240.00208 * 22 20 18 26 26 C 1.53776 * 87.11288 * 25.36201 * 16 15 14 27 27 H 1.09003 * 109.47041 * 89.99849 * 1 2 3 28 28 H 1.08995 * 109.47329 * 210.00184 * 1 2 3 29 29 H 1.09001 * 109.47070 * 329.99775 * 1 2 3 30 30 H 1.08999 * 109.47521 * 60.00493 * 5 3 2 31 31 H 1.08998 * 109.47137 * 299.99748 * 5 3 2 32 32 H 1.09004 * 109.47285 * 302.00229 * 7 6 5 33 33 H 1.09006 * 109.47023 * 61.99922 * 7 6 5 34 34 H 1.08997 * 109.47511 * 181.99904 * 7 6 5 35 35 H 1.08998 * 110.10169 * 92.32550 * 8 6 5 36 36 H 1.08997 * 110.10130 * 330.71076 * 8 6 5 37 37 H 1.09002 * 111.37018 * 154.59380 * 9 8 6 38 38 H 1.08999 * 111.36676 * 279.33587 * 9 8 6 39 39 H 0.97004 * 126.08611 * 302.75283 * 13 6 5 40 40 H 1.09000 * 112.85164 * 170.33185 * 14 2 1 41 41 H 1.08995 * 113.61200 * 334.56297 * 15 14 2 42 42 H 1.08997 * 113.61131 * 105.46928 * 15 14 2 43 43 H 1.08999 * 113.74423 * 139.94106 * 16 15 14 44 44 H 0.97005 * 119.99489 * 72.50207 * 17 16 15 45 45 H 0.97005 * 119.99706 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.61607 * 220.08781 * 26 16 15 47 47 H 1.09006 * 113.61623 * 89.18508 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3797 3.6352 0.0002 7 6 3.2130 3.5633 1.2813 8 6 1.5948 4.9508 -0.0011 9 6 2.4661 5.9765 -0.7812 10 16 3.1604 4.8709 -2.0764 11 8 2.1978 4.5764 -3.0793 12 8 4.4992 5.2230 -2.3975 13 7 3.2742 3.4827 -1.1493 14 6 2.1974 -1.2687 0.0006 15 6 1.5589 -2.3491 -0.8884 16 6 1.9073 -3.3557 0.2232 17 7 3.2377 -3.9515 0.0771 18 6 3.3637 -5.2578 -0.3137 19 1 2.4823 -5.8488 -0.5146 20 6 4.6244 -5.8221 -0.4527 21 7 5.6984 -5.1018 -0.2084 22 14 4.7963 -7.6039 -0.9865 23 1 3.4481 -8.1901 -1.1964 24 1 5.5677 -7.6688 -2.2537 25 1 5.5097 -8.3696 0.0671 26 6 1.8673 -2.1702 1.2019 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 0.7585 2.5303 0.8892 31 1 0.7592 2.5298 -0.8908 32 1 2.5521 3.6010 2.1473 33 1 3.7778 2.6311 1.2956 34 1 3.9029 4.4065 1.3139 35 1 1.4373 5.2940 1.0214 36 1 0.6367 4.8149 -0.5029 37 1 1.8545 6.7657 -1.2186 38 1 3.2520 6.3913 -0.1500 39 1 3.8339 2.7137 -1.3397 40 1 3.2666 -1.1404 -0.1682 41 1 0.4873 -2.2155 -1.0363 42 1 2.0975 -2.5223 -1.8200 43 1 1.1290 -4.0971 0.4035 44 1 4.0293 -3.4205 0.2573 45 1 6.5793 -5.4962 -0.3051 46 1 2.6545 -2.1993 1.9553 47 1 0.8801 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677441582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:29 Heat of formation + Delta-G solvation = -85.771710 kcal Electronic energy + Delta-G solvation = -29330.098212 eV Core-core repulsion = 25254.454427 eV Total energy + Delta-G solvation = -4075.643785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.55816 -40.06941 -38.44474 -38.00163 -36.90368 -36.16684 -34.80061 -32.61574 -32.01836 -31.29922 -28.83868 -27.90897 -26.57390 -26.18713 -25.33348 -24.08356 -21.61725 -20.49749 -20.45260 -19.66002 -19.30521 -18.52254 -17.87714 -17.48285 -17.20111 -16.76228 -16.67776 -16.60594 -15.93745 -15.77201 -15.51612 -15.11002 -14.92597 -14.32754 -14.24660 -14.09355 -13.96364 -13.66517 -13.45751 -13.35614 -13.24553 -13.20799 -13.18599 -13.07047 -13.00085 -12.82781 -12.70655 -12.48015 -12.43742 -12.13341 -12.07587 -11.82902 -11.71201 -11.66655 -11.40674 -11.19326 -10.93390 -10.48354 -10.31606 -9.47182 -9.05930 -7.97853 -5.28019 -0.65223 1.45451 1.46869 1.56958 1.68016 1.75193 2.11399 2.53305 2.72420 3.07438 3.34372 3.35718 3.52869 3.63057 3.71140 3.85440 3.86969 3.93023 4.05255 4.27455 4.28792 4.32721 4.36111 4.53998 4.60081 4.70585 4.74848 4.77149 4.80555 4.82066 4.90179 4.95731 4.97154 5.07484 5.09921 5.13995 5.24144 5.30868 5.33418 5.50749 5.63368 5.76407 6.22373 6.24330 6.57975 7.28645 7.32799 8.04959 8.26328 9.25893 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.002424 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.254238 B =11546.378419 C =12231.905273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.604 5.604 3 C 0.501 3.499 4 O -0.579 6.579 5 C -0.141 4.141 6 C 0.146 3.854 7 C -0.168 4.168 8 C -0.113 4.113 9 C -0.547 4.547 10 S 2.542 3.458 11 O -0.998 6.998 12 O -1.018 7.018 13 N -1.091 6.091 14 C 0.130 3.870 15 C -0.164 4.164 16 C 0.152 3.848 17 N -0.725 5.725 18 C -0.241 4.241 19 H 0.083 0.917 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.977 3.023 23 H -0.260 1.260 24 H -0.297 1.297 25 H -0.293 1.293 26 C -0.145 4.145 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.146 0.854 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.152 0.848 36 H 0.122 0.878 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.429 0.571 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.370 0.630 45 H 0.250 0.750 46 H 0.047 0.953 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.353 26.505 5.622 33.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.335 5.335 3 C 0.291 3.709 4 O -0.460 6.460 5 C -0.182 4.182 6 C 0.056 3.944 7 C -0.227 4.227 8 C -0.152 4.152 9 C -0.682 4.682 10 S 2.642 3.358 11 O -0.987 6.987 12 O -1.008 7.008 13 N -0.859 5.859 14 C 0.026 3.974 15 C -0.206 4.206 16 C 0.041 3.959 17 N -0.362 5.362 18 C -0.373 4.373 19 H 0.101 0.899 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.806 3.194 23 H -0.184 1.184 24 H -0.224 1.224 25 H -0.220 1.220 26 C -0.184 4.184 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.164 0.836 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.170 0.830 36 H 0.140 0.860 37 H 0.194 0.806 38 H 0.180 0.820 39 H 0.271 0.729 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.202 0.798 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.560 26.471 4.534 32.645 hybrid contribution 1.598 -1.553 -0.130 2.232 sum -16.961 24.918 4.405 30.463 Atomic orbital electron populations 1.22139 0.77000 1.05429 1.03184 1.48050 1.08461 1.04797 1.72188 1.21446 0.88014 0.86619 0.74796 1.90598 1.16258 1.87623 1.51477 1.22369 0.98863 0.89383 1.07570 1.20682 0.89866 0.96028 0.87829 1.22473 1.00937 1.03111 0.96151 1.22723 0.98215 0.87266 1.06946 1.30573 1.12476 1.10760 1.14433 1.06979 0.74178 0.77865 0.76759 1.93589 1.63515 1.83399 1.58225 1.93541 1.38316 1.83804 1.85118 1.55235 1.57072 1.35290 1.38257 1.22186 0.95858 0.81906 0.97445 1.24142 1.01383 0.96825 0.98238 1.21282 0.87483 0.92667 0.94473 1.42434 1.02764 1.10497 1.80510 1.19753 0.92576 0.88738 1.36185 0.89864 1.25664 0.95317 1.02669 1.03606 1.69857 0.97416 1.37588 1.57475 0.85021 0.77974 0.79685 0.76757 1.18441 1.22437 1.22034 1.23785 1.02729 0.95445 0.96476 0.91771 0.89743 0.87432 0.83618 0.86580 0.89318 0.93060 0.91761 0.82989 0.85976 0.80577 0.82024 0.72892 0.91285 0.87023 0.94427 0.90466 0.79842 0.94096 0.93392 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 8.84 127.77 1.13 1.92 16 2 N -0.60 -14.13 3.08 -819.63 -2.53 -16.66 16 3 C 0.50 12.21 7.16 87.66 0.63 12.84 16 4 O -0.58 -19.62 11.25 -3.03 -0.03 -19.66 16 5 C -0.14 -1.72 3.24 29.85 0.10 -1.62 16 6 C 0.15 1.89 0.83 3.68 0.00 1.89 16 7 C -0.17 -2.47 8.14 71.98 0.59 -1.88 16 8 C -0.11 -0.32 5.56 31.54 0.18 -0.14 16 9 C -0.55 -2.59 7.65 72.86 0.56 -2.03 16 10 S 2.54 49.74 6.48 -56.49 -0.37 49.37 16 11 O -1.00 -26.03 18.14 -127.81 -2.32 -28.34 16 12 O -1.02 -30.01 18.14 -127.81 -2.32 -32.33 16 13 N -1.09 -23.39 5.65 -152.03 -0.86 -24.25 16 14 C 0.13 4.27 4.08 45.52 0.19 4.45 16 15 C -0.16 -5.43 7.34 31.18 0.23 -5.21 16 16 C 0.15 5.79 4.57 45.57 0.21 5.99 16 17 N -0.72 -37.40 5.31 -320.18 -1.70 -39.10 16 18 C -0.24 -13.51 9.97 84.03 0.84 -12.67 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 21 N -0.97 -61.82 13.06 21.65 0.28 -61.54 16 22 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 26 C -0.14 -4.49 7.36 31.12 0.23 -4.26 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.94 6.33 -2.39 -0.02 0.93 16 29 H 0.11 0.51 6.44 -2.39 -0.02 0.49 16 30 H 0.15 0.51 7.40 -2.39 -0.02 0.49 16 31 H 0.12 1.14 8.07 -2.39 -0.02 1.12 16 32 H 0.09 0.75 8.11 -2.39 -0.02 0.73 16 33 H 0.05 1.25 5.65 -2.38 -0.01 1.24 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.15 -0.54 7.75 -2.39 -0.02 -0.56 16 36 H 0.12 -0.11 7.80 -2.39 -0.02 -0.13 16 37 H 0.18 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.43 12.06 6.97 -93.00 -0.65 11.41 16 40 H 0.07 2.97 7.21 -2.39 -0.02 2.95 16 41 H 0.11 2.77 6.81 -2.39 -0.02 2.75 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 44 H 0.37 21.16 7.90 -92.70 -0.73 20.42 16 45 H 0.25 15.42 8.31 -92.70 -0.77 14.64 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.12 2.68 6.82 -2.38 -0.02 2.66 16 Total: -1.00 -92.53 378.58 -2.86 -95.39 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.38 Total: 33.11 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 5.33 Total: -4.99 kcal Atomic # 7 Polarization: -136.74 SS G_CDS: -4.80 Total: -141.55 kcal Atomic # 8 Polarization: -75.66 SS G_CDS: -4.67 Total: -80.33 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.37 Total: 49.37 kcal Total: -92.53 -2.86 -95.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677441582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.615 kcal (2) G-P(sol) polarization free energy of solvation -92.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds