Wall clock time and date at job start Wed Apr 1 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 108.58072 * 2 1 4 4 C 1.50698 * 109.47578 * 61.54274 * 3 2 1 5 5 O 1.21283 * 119.99578 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00352 * 179.97438 * 4 3 2 7 7 C 1.47019 * 125.64595 * 0.05354 * 6 4 3 8 8 C 1.54330 * 107.26866 * 181.01194 * 7 6 4 9 9 C 1.55157 * 102.94049 * 22.19588 * 8 7 6 10 10 H 1.09003 * 111.00560 * 82.60874 * 9 8 7 11 11 C 1.53001 * 110.99957 * 206.42194 * 9 8 7 12 12 N 1.46500 * 109.46889 * 293.54468 * 11 9 8 13 13 C 1.36938 * 119.99701 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00393 * 359.97438 * 13 12 11 15 15 C 1.38814 * 120.00207 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99958 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00241 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47038 * 89.99725 * 17 15 13 19 19 H 1.48495 * 109.47357 * 209.99722 * 17 15 13 20 20 H 1.48499 * 109.47157 * 330.00019 * 17 15 13 21 21 C 1.47426 * 125.65028 * 180.02562 * 6 4 3 22 22 C 1.53194 * 108.50699 * 242.07801 * 2 1 3 23 23 C 1.55556 * 106.24297 * 211.44143 * 22 2 1 24 24 S 1.83906 * 99.64228 * 36.98726 * 23 22 2 25 25 O 1.42092 * 111.46971 * 215.91602 * 24 23 22 26 26 O 1.42103 * 111.46114 * 75.85692 * 24 23 22 27 27 N 1.46452 * 108.64439 * 117.99614 * 2 1 3 28 28 H 1.08999 * 109.47204 * 60.69952 * 1 2 3 29 29 H 1.09001 * 109.47551 * 180.70060 * 1 2 3 30 30 H 1.09001 * 109.47124 * 300.70648 * 1 2 3 31 31 H 1.09005 * 109.47320 * 301.54084 * 3 2 1 32 32 H 1.08998 * 109.47257 * 181.54330 * 3 2 1 33 33 H 1.09000 * 109.88042 * 61.59824 * 7 6 4 34 34 H 1.08996 * 109.88551 * 300.42965 * 7 6 4 35 35 H 1.08996 * 110.71860 * 263.82642 * 8 7 6 36 36 H 1.09002 * 110.71679 * 140.55640 * 8 7 6 37 37 H 1.08997 * 109.47151 * 53.54451 * 11 9 8 38 38 H 1.08999 * 109.46931 * 173.55070 * 11 9 8 39 39 H 0.96996 * 120.00726 * 0.02562 * 12 11 9 40 40 H 0.97001 * 120.00126 * 180.02562 * 16 15 13 41 41 H 1.09004 * 110.36498 * 37.07621 * 21 6 4 42 42 H 1.09000 * 110.45813 * 274.80371 * 21 6 4 43 43 H 1.09005 * 110.09974 * 330.63474 * 22 2 1 44 44 H 1.08997 * 110.10464 * 92.24659 * 22 2 1 45 45 H 1.09008 * 111.36999 * 279.38935 * 23 22 2 46 46 H 1.09004 * 111.37166 * 154.59150 * 23 22 2 47 47 H 0.96999 * 126.08254 * 302.61043 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5359 2.1422 1.2491 5 8 0.8688 1.5350 2.0598 6 7 1.8473 3.4354 1.4658 7 6 2.6447 4.2864 0.5705 8 6 2.7607 5.6725 1.2390 9 6 2.5016 5.3589 2.7363 10 1 3.4093 5.0032 3.2238 11 6 1.9354 6.5809 3.4624 12 7 2.9505 7.6363 3.5067 13 6 2.6692 8.8319 4.1121 14 1 1.6988 8.9970 4.5566 15 6 3.6307 9.8322 4.1536 16 7 4.8132 9.6313 3.6115 17 14 3.2467 11.4634 4.9789 18 1 3.6173 11.3909 6.4151 19 1 4.0225 12.5455 4.3215 20 1 1.7949 11.7505 4.8562 21 6 1.4444 4.2312 2.6396 22 6 2.0163 -0.6803 -1.2836 23 6 3.3627 -1.3724 -0.9260 24 16 2.9761 -1.9343 0.7819 25 8 4.1151 -1.8505 1.6273 26 8 2.1254 -3.0725 0.7748 27 7 1.9982 -0.6514 1.2253 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5248 0.8836 31 1 1.6237 1.9660 -0.8759 32 1 3.1070 1.4673 -0.0277 33 1 2.1451 4.3805 -0.3936 34 1 3.6368 3.8555 0.4358 35 1 2.0028 6.3526 0.8505 36 1 3.7596 6.0858 1.0988 37 1 1.0562 6.9445 2.9306 38 1 1.6562 6.3026 4.4786 39 1 3.8219 7.4883 3.1072 40 1 5.4853 10.3301 3.6409 41 1 1.4624 3.6160 3.5393 42 1 0.4511 4.6544 2.4902 43 1 1.2892 -1.4228 -1.6126 44 1 2.1732 0.0630 -2.0652 45 1 4.1889 -0.6614 -0.9327 46 1 3.5630 -2.2165 -1.5860 47 1 1.7805 -0.3858 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690753729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:16 Heat of formation + Delta-G solvation = -83.759259 kcal Electronic energy + Delta-G solvation = -28867.979243 eV Core-core repulsion = 24792.422724 eV Total energy + Delta-G solvation = -4075.556519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.67377 -38.87529 -37.44670 -37.11048 -36.14219 -34.75529 -32.44125 -32.17284 -31.01382 -30.24240 -29.25923 -28.20755 -25.35233 -24.52304 -23.12077 -22.47015 -21.00977 -20.09232 -19.83825 -19.34739 -17.87696 -17.33510 -17.05924 -16.79130 -16.30188 -16.09609 -15.72018 -15.03899 -15.01538 -14.62302 -14.50039 -14.03139 -13.85637 -13.70478 -13.55267 -13.25354 -13.14282 -13.01799 -12.64452 -12.52507 -12.40903 -12.38901 -12.26635 -12.18484 -11.95272 -11.67985 -11.58829 -11.33328 -11.22208 -10.91427 -10.89824 -10.72356 -10.56063 -10.44597 -10.09217 -9.82952 -9.75688 -9.70280 -8.92379 -8.71276 -6.97743 -5.81547 -3.10315 -0.07025 2.28989 2.46543 2.82607 3.26794 3.40880 3.46317 3.47573 3.49789 3.75975 4.00819 4.15438 4.32613 4.47325 4.54230 4.66962 4.70703 4.81163 4.91017 4.95735 4.99392 5.03181 5.11571 5.22469 5.23779 5.31928 5.39727 5.51666 5.57038 5.60939 5.75862 5.82090 5.95357 5.97512 6.06159 6.10823 6.19224 6.33095 6.37343 6.66348 6.78446 7.00315 7.43408 7.66033 8.02893 8.37400 9.48931 10.05409 10.40247 11.41345 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.001993 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.267796 B =14048.545161 C =14230.331306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.159 3.841 3 C -0.147 4.147 4 C 0.533 3.467 5 O -0.539 6.539 6 N -0.615 5.615 7 C 0.097 3.903 8 C -0.121 4.121 9 C -0.106 4.106 10 H 0.084 0.916 11 C 0.164 3.836 12 N -0.731 5.731 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.112 3.888 22 C -0.117 4.117 23 C -0.596 4.596 24 S 2.564 3.436 25 O -0.961 6.961 26 O -0.955 6.955 27 N -1.078 6.078 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 -22.040 -15.767 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 C -0.188 4.188 4 C 0.322 3.678 5 O -0.418 6.418 6 N -0.348 5.348 7 C -0.026 4.026 8 C -0.159 4.159 9 C -0.126 4.126 10 H 0.103 0.897 11 C 0.036 3.964 12 N -0.375 5.375 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.010 4.010 22 C -0.156 4.156 23 C -0.726 4.726 24 S 2.658 3.342 25 O -0.950 6.950 26 O -0.944 6.944 27 N -0.848 5.848 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.160 0.840 46 H 0.159 0.841 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -5.326 -23.165 -14.761 27.979 hybrid contribution 0.136 1.693 0.073 1.700 sum -5.190 -21.471 -14.687 26.527 Atomic orbital electron populations 1.22471 0.92586 1.03419 1.04181 1.20262 0.97103 0.91640 0.84228 1.22245 1.03269 0.95794 0.97518 1.20061 0.79730 0.80095 0.87944 1.90574 1.39717 1.64071 1.47434 1.48589 1.52752 1.10197 1.23256 1.22186 0.95151 0.91816 0.93436 1.22641 1.04017 0.94310 0.94894 1.22567 0.98525 0.95465 0.96011 0.89745 1.20542 0.92462 0.86895 0.96457 1.42298 1.13663 1.12345 1.69214 1.19223 0.98288 0.90804 1.28794 0.91160 1.24739 0.96097 0.98624 1.01497 1.69652 1.04747 1.33887 1.49962 0.86181 0.77335 0.83615 0.78999 1.21693 1.21767 1.20757 1.22260 0.98227 0.92158 0.88373 1.22532 0.93898 1.01896 0.97273 1.30811 1.05670 1.12081 1.24082 1.06551 0.75066 0.74603 0.77988 1.93626 1.51562 1.86471 1.63349 1.93653 1.65719 1.48909 1.86117 1.55142 1.67104 1.49494 1.13079 0.92106 0.91722 0.88857 0.87764 0.88362 0.91476 0.91404 0.90155 0.89416 0.96008 0.96015 0.78239 0.93490 0.90386 0.91167 0.87965 0.86863 0.83998 0.84113 0.71202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.17 37.16 0.30 -0.96 16 2 C 0.16 1.08 0.83 -131.75 -0.11 0.97 16 3 C -0.15 -0.98 3.86 -27.89 -0.11 -1.09 16 4 C 0.53 5.79 7.33 -10.99 -0.08 5.71 16 5 O -0.54 -7.25 12.05 5.55 0.07 -7.18 16 6 N -0.61 -6.93 3.33 -170.54 -0.57 -7.50 16 7 C 0.10 0.93 6.49 -3.06 -0.02 0.91 16 8 C -0.12 -1.53 6.13 -24.89 -0.15 -1.68 16 9 C -0.11 -1.55 3.10 -88.49 -0.27 -1.83 16 10 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.16 3.09 5.71 -4.04 -0.02 3.06 16 12 N -0.73 -17.62 5.45 -59.91 -0.33 -17.95 16 13 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 17 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.11 1.46 6.38 -2.54 -0.02 1.45 16 22 C -0.12 -0.43 5.56 -25.27 -0.14 -0.57 16 23 C -0.60 -2.30 7.66 38.52 0.29 -2.01 16 24 S 2.56 22.44 6.47 -107.50 -0.70 21.75 16 25 O -0.96 -12.22 18.14 -57.37 -1.04 -13.26 16 26 O -0.95 -11.40 18.14 -57.37 -1.04 -12.44 16 27 N -1.08 -9.76 5.64 0.59 0.00 -9.76 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.96 5.55 -51.93 -0.29 0.67 16 31 H 0.10 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 9.64 7.53 -40.82 -0.31 9.33 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 42 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 43 H 0.10 0.30 7.82 -51.93 -0.41 -0.10 16 44 H 0.11 0.15 7.74 -51.93 -0.40 -0.25 16 45 H 0.14 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.14 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.44 4.69 7.07 -40.36 -0.29 4.41 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -36.92 383.41 -10.25 -47.17 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -7.55 Total: 6.42 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.57 Total: -3.21 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.17 Total: -62.02 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -2.01 Total: -32.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 22.44 SS G_CDS: -0.70 Total: 21.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.92 -10.25 -47.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690753729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.592 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds