Wall clock time and date at job start Wed Apr 1 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 108.58072 * 2 1 4 4 C 1.50698 * 109.47578 * 61.54274 * 3 2 1 5 5 O 1.21283 * 119.99578 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00352 * 179.97438 * 4 3 2 7 7 C 1.47019 * 125.64595 * 0.05354 * 6 4 3 8 8 C 1.54330 * 107.26866 * 181.01194 * 7 6 4 9 9 C 1.55157 * 102.94049 * 22.19588 * 8 7 6 10 10 H 1.09003 * 111.00560 * 82.60874 * 9 8 7 11 11 C 1.53001 * 110.99957 * 206.42194 * 9 8 7 12 12 N 1.46500 * 109.46889 * 293.54468 * 11 9 8 13 13 C 1.36938 * 119.99701 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00393 * 359.97438 * 13 12 11 15 15 C 1.38814 * 120.00207 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99958 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00241 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47038 * 89.99725 * 17 15 13 19 19 H 1.48495 * 109.47357 * 209.99722 * 17 15 13 20 20 H 1.48499 * 109.47157 * 330.00019 * 17 15 13 21 21 C 1.47426 * 125.65028 * 180.02562 * 6 4 3 22 22 C 1.53194 * 108.50699 * 242.07801 * 2 1 3 23 23 C 1.55556 * 106.24297 * 211.44143 * 22 2 1 24 24 S 1.83906 * 99.64228 * 36.98726 * 23 22 2 25 25 O 1.42092 * 111.46971 * 215.91602 * 24 23 22 26 26 O 1.42103 * 111.46114 * 75.85692 * 24 23 22 27 27 N 1.46452 * 108.64439 * 117.99614 * 2 1 3 28 28 H 1.08999 * 109.47204 * 60.69952 * 1 2 3 29 29 H 1.09001 * 109.47551 * 180.70060 * 1 2 3 30 30 H 1.09001 * 109.47124 * 300.70648 * 1 2 3 31 31 H 1.09005 * 109.47320 * 301.54084 * 3 2 1 32 32 H 1.08998 * 109.47257 * 181.54330 * 3 2 1 33 33 H 1.09000 * 109.88042 * 61.59824 * 7 6 4 34 34 H 1.08996 * 109.88551 * 300.42965 * 7 6 4 35 35 H 1.08996 * 110.71860 * 263.82642 * 8 7 6 36 36 H 1.09002 * 110.71679 * 140.55640 * 8 7 6 37 37 H 1.08997 * 109.47151 * 53.54451 * 11 9 8 38 38 H 1.08999 * 109.46931 * 173.55070 * 11 9 8 39 39 H 0.96996 * 120.00726 * 0.02562 * 12 11 9 40 40 H 0.97001 * 120.00126 * 180.02562 * 16 15 13 41 41 H 1.09004 * 110.36498 * 37.07621 * 21 6 4 42 42 H 1.09000 * 110.45813 * 274.80371 * 21 6 4 43 43 H 1.09005 * 110.09974 * 330.63474 * 22 2 1 44 44 H 1.08997 * 110.10464 * 92.24659 * 22 2 1 45 45 H 1.09008 * 111.36999 * 279.38935 * 23 22 2 46 46 H 1.09004 * 111.37166 * 154.59150 * 23 22 2 47 47 H 0.96999 * 126.08254 * 302.61043 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5359 2.1422 1.2491 5 8 0.8688 1.5350 2.0598 6 7 1.8473 3.4354 1.4658 7 6 2.6447 4.2864 0.5705 8 6 2.7607 5.6725 1.2390 9 6 2.5016 5.3589 2.7363 10 1 3.4093 5.0032 3.2238 11 6 1.9354 6.5809 3.4624 12 7 2.9505 7.6363 3.5067 13 6 2.6692 8.8319 4.1121 14 1 1.6988 8.9970 4.5566 15 6 3.6307 9.8322 4.1536 16 7 4.8132 9.6313 3.6115 17 14 3.2467 11.4634 4.9789 18 1 3.6173 11.3909 6.4151 19 1 4.0225 12.5455 4.3215 20 1 1.7949 11.7505 4.8562 21 6 1.4444 4.2312 2.6396 22 6 2.0163 -0.6803 -1.2836 23 6 3.3627 -1.3724 -0.9260 24 16 2.9761 -1.9343 0.7819 25 8 4.1151 -1.8505 1.6273 26 8 2.1254 -3.0725 0.7748 27 7 1.9982 -0.6514 1.2253 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5248 0.8836 31 1 1.6237 1.9660 -0.8759 32 1 3.1070 1.4673 -0.0277 33 1 2.1451 4.3805 -0.3936 34 1 3.6368 3.8555 0.4358 35 1 2.0028 6.3526 0.8505 36 1 3.7596 6.0858 1.0988 37 1 1.0562 6.9445 2.9306 38 1 1.6562 6.3026 4.4786 39 1 3.8219 7.4883 3.1072 40 1 5.4853 10.3301 3.6409 41 1 1.4624 3.6160 3.5393 42 1 0.4511 4.6544 2.4902 43 1 1.2892 -1.4228 -1.6126 44 1 2.1732 0.0630 -2.0652 45 1 4.1889 -0.6614 -0.9327 46 1 3.5630 -2.2165 -1.5860 47 1 1.7805 -0.3858 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690753729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:15 Heat of formation + Delta-G solvation = -113.837876 kcal Electronic energy + Delta-G solvation = -28869.283549 eV Core-core repulsion = 24792.422724 eV Total energy + Delta-G solvation = -4076.860825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43272 -39.67300 -38.27516 -37.90694 -36.90134 -36.41137 -33.96389 -32.61718 -32.13107 -31.28743 -30.26041 -29.01371 -26.86093 -25.06013 -24.34396 -23.85356 -21.59645 -21.29803 -20.47039 -20.14187 -19.15814 -18.51824 -18.01141 -17.49854 -17.26028 -16.77634 -16.58113 -16.35124 -15.82968 -15.66542 -15.34987 -15.16740 -14.94500 -14.80611 -14.47682 -14.13740 -14.02736 -13.92695 -13.77350 -13.42774 -13.22026 -13.17613 -13.06123 -12.98726 -12.91636 -12.76496 -12.56956 -12.44329 -12.21829 -12.12872 -12.10388 -11.87922 -11.76183 -11.66356 -11.58731 -11.38163 -10.93432 -10.63016 -10.33607 -9.58914 -8.99503 -7.95339 -5.23533 -0.64553 1.48288 1.49537 1.57812 1.67254 1.73267 2.01716 2.56294 2.71965 3.07939 3.33980 3.38495 3.45269 3.59482 3.68571 3.69348 3.84199 3.92163 4.06560 4.28492 4.33840 4.36537 4.43813 4.51459 4.58091 4.64798 4.67404 4.72364 4.72938 4.83605 4.87672 4.89877 4.97224 5.02451 5.09424 5.11310 5.24771 5.28795 5.33552 5.42909 5.50372 5.58642 6.24323 6.27388 6.62342 7.23483 7.34514 8.09260 8.33758 9.28036 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.001993 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.267796 B =14048.545161 C =14230.331306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 C -0.142 4.142 4 C 0.522 3.478 5 O -0.574 6.574 6 N -0.619 5.619 7 C 0.105 3.895 8 C -0.118 4.118 9 C -0.099 4.099 10 H 0.072 0.928 11 C 0.164 3.836 12 N -0.741 5.741 13 C -0.246 4.246 14 H 0.073 0.927 15 C -0.073 4.073 16 N -0.967 5.967 17 Si 0.971 3.029 18 H -0.290 1.290 19 H -0.294 1.294 20 H -0.270 1.270 21 C 0.120 3.880 22 C -0.115 4.115 23 C -0.550 4.550 24 S 2.543 3.457 25 O -1.014 7.014 26 O -1.002 7.002 27 N -1.088 6.088 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.014 0.986 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.157 0.843 45 H 0.169 0.831 46 H 0.173 0.827 47 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -21.985 -19.407 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.059 3.941 3 C -0.183 4.183 4 C 0.313 3.687 5 O -0.454 6.454 6 N -0.352 5.352 7 C -0.017 4.017 8 C -0.156 4.156 9 C -0.119 4.119 10 H 0.091 0.909 11 C 0.037 3.963 12 N -0.384 5.384 13 C -0.378 4.378 14 H 0.091 0.909 15 C -0.265 4.265 16 N -0.618 5.618 17 Si 0.801 3.199 18 H -0.217 1.217 19 H -0.220 1.220 20 H -0.195 1.195 21 C -0.004 4.004 22 C -0.154 4.154 23 C -0.685 4.685 24 S 2.643 3.357 25 O -1.004 7.004 26 O -0.992 6.992 27 N -0.856 5.856 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.209 0.791 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.175 0.825 45 H 0.187 0.813 46 H 0.191 0.809 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.426 -23.156 -18.373 30.054 hybrid contribution 0.067 1.662 1.199 2.051 sum -5.359 -21.494 -17.174 28.029 Atomic orbital electron populations 1.22433 0.93582 1.02711 1.03842 1.20608 0.96547 0.92271 0.84671 1.22397 1.04633 0.95105 0.96186 1.20990 0.79028 0.79568 0.89065 1.90584 1.41181 1.64651 1.48978 1.48685 1.53147 1.10649 1.22725 1.22251 0.96505 0.89227 0.93741 1.22576 1.03168 0.96535 0.93357 1.22346 0.98245 0.94170 0.97136 0.90949 1.20645 0.91623 0.87324 0.96672 1.42465 1.14377 1.12753 1.68800 1.19606 0.98254 0.91892 1.28017 0.90882 1.25522 0.96171 1.02009 1.02847 1.69794 1.05590 1.34717 1.51665 0.85172 0.77572 0.79541 0.77657 1.21691 1.22008 1.19499 1.21989 0.97588 0.91614 0.89177 1.22730 0.93424 1.03089 0.96116 1.30620 1.06954 1.13522 1.17445 1.06941 0.73985 0.74170 0.80592 1.93552 1.52821 1.86946 1.67064 1.93587 1.66608 1.51190 1.87769 1.55172 1.67437 1.49490 1.13490 0.89453 0.92573 0.92159 0.83957 0.86125 0.88123 0.89328 0.90788 0.90406 0.95528 0.96779 0.79119 0.93944 0.91896 0.91163 0.86965 0.82517 0.81310 0.80920 0.72660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 8.17 71.98 0.59 -1.63 16 2 C 0.15 1.57 0.83 3.68 0.00 1.58 16 3 C -0.14 -1.27 3.86 29.85 0.12 -1.16 16 4 C 0.52 10.38 7.33 87.66 0.64 11.03 16 5 O -0.57 -15.58 12.05 -3.04 -0.04 -15.62 16 6 N -0.62 -12.73 3.33 -811.84 -2.70 -15.43 16 7 C 0.10 1.63 6.49 86.73 0.56 2.19 16 8 C -0.12 -2.84 6.13 31.78 0.19 -2.65 16 9 C -0.10 -2.92 3.10 -9.41 -0.03 -2.95 16 10 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 11 C 0.16 6.25 5.71 86.38 0.49 6.75 16 12 N -0.74 -36.26 5.45 -343.45 -1.87 -38.13 16 13 C -0.25 -13.48 9.99 84.03 0.84 -12.64 16 14 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 15 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 16 N -0.97 -57.72 13.06 21.65 0.28 -57.44 16 17 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 C 0.12 3.11 6.38 86.85 0.55 3.66 16 22 C -0.11 -0.21 5.56 31.54 0.18 -0.03 16 23 C -0.55 -1.54 7.66 72.86 0.56 -0.98 16 24 S 2.54 43.62 6.47 -56.49 -0.37 43.26 16 25 O -1.01 -26.80 18.14 -127.81 -2.32 -29.12 16 26 O -1.00 -24.83 18.14 -127.81 -2.32 -27.15 16 27 N -1.09 -19.41 5.64 -152.04 -0.86 -20.27 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 1.24 5.55 -2.39 -0.01 1.23 16 31 H 0.14 0.24 8.09 -2.38 -0.02 0.22 16 32 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.87 8.01 -2.39 -0.02 1.85 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.03 1.00 8.11 -2.39 -0.02 0.98 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.38 19.31 7.53 -92.71 -0.70 18.62 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.06 1.80 8.04 -2.38 -0.02 1.78 16 42 H 0.07 1.80 8.03 -2.39 -0.02 1.78 16 43 H 0.11 0.09 7.82 -2.38 -0.02 0.08 16 44 H 0.16 -0.89 7.74 -2.39 -0.02 -0.91 16 45 H 0.17 -0.22 8.14 -2.38 -0.02 -0.24 16 46 H 0.17 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.43 9.83 7.07 -93.00 -0.66 9.17 16 Total: -1.00 -85.94 383.41 -3.37 -89.31 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.37 Total: 23.63 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.16 Total: -0.49 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -5.15 Total: -131.27 kcal Atomic # 8 Polarization: -67.21 SS G_CDS: -4.67 Total: -71.89 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 43.62 SS G_CDS: -0.37 Total: 43.26 kcal Total: -85.94 -3.37 -89.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690753729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.533 kcal (2) G-P(sol) polarization free energy of solvation -85.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds