Wall clock time and date at job start Wed Apr 1 2020 03:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 108.57963 * 2 1 4 4 C 1.50702 * 109.46970 * 61.54179 * 3 2 1 5 5 O 1.21282 * 120.00176 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00186 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00283 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.47138 * 173.73826 * 7 6 4 9 9 H 1.08999 * 109.86926 * 57.72176 * 8 7 6 10 10 C 1.54321 * 109.87918 * 178.73566 * 8 7 6 11 11 C 1.55407 * 102.82695 * 141.51865 * 10 8 7 12 12 C 1.54905 * 101.66437 * 324.66236 * 11 10 8 13 13 N 1.47019 * 109.88141 * 296.70404 * 8 7 6 14 14 C 1.36938 * 125.65186 * 61.67988 * 13 8 7 15 15 H 1.08005 * 119.99505 * 322.87881 * 14 13 8 16 16 C 1.38806 * 120.00432 * 142.87304 * 14 13 8 17 17 N 1.31613 * 120.00373 * 164.99593 * 16 14 13 18 18 Si 1.86800 * 119.99983 * 345.00186 * 16 14 13 19 19 H 1.48494 * 109.47587 * 92.99222 * 18 16 14 20 20 H 1.48503 * 109.47091 * 212.99927 * 18 16 14 21 21 H 1.48504 * 109.46814 * 332.99371 * 18 16 14 22 22 C 1.53199 * 108.51069 * 242.08300 * 2 1 3 23 23 C 1.55560 * 106.23952 * 211.44049 * 22 2 1 24 24 S 1.83898 * 99.64022 * 36.98543 * 23 22 2 25 25 O 1.42104 * 111.46439 * 215.90740 * 24 23 22 26 26 O 1.42103 * 111.61453 * 75.90270 * 24 23 22 27 27 N 1.46450 * 108.64326 * 117.99780 * 2 1 3 28 28 H 1.09009 * 109.46919 * 60.70602 * 1 2 3 29 29 H 1.08999 * 109.47066 * 180.69307 * 1 2 3 30 30 H 1.08995 * 109.47322 * 300.70108 * 1 2 3 31 31 H 1.08994 * 109.47393 * 301.54746 * 3 2 1 32 32 H 1.08996 * 109.47350 * 181.53974 * 3 2 1 33 33 H 0.97000 * 119.99952 * 359.73041 * 6 4 3 34 34 H 1.08991 * 109.47655 * 293.74305 * 7 6 4 35 35 H 1.09000 * 109.46904 * 53.74261 * 7 6 4 36 36 H 1.09000 * 110.72499 * 259.97356 * 10 8 7 37 37 H 1.09003 * 110.72442 * 23.24980 * 10 8 7 38 38 H 1.09001 * 111.03791 * 206.52719 * 11 10 8 39 39 H 1.09003 * 110.89063 * 82.73151 * 11 10 8 40 40 H 1.09000 * 110.36741 * 278.08316 * 12 11 10 41 41 H 1.08999 * 110.36708 * 155.76200 * 12 11 10 42 42 H 0.96999 * 120.00880 * 180.02562 * 17 16 14 43 43 H 1.09004 * 110.09865 * 330.63081 * 22 2 1 44 44 H 1.09001 * 110.10373 * 92.24360 * 22 2 1 45 45 H 1.08997 * 111.36889 * 279.38342 * 23 22 2 46 46 H 1.09000 * 111.41392 * 154.60799 * 23 22 2 47 47 H 0.97001 * 126.08318 * 302.68300 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4503 0.0000 4 6 1.5358 2.1421 1.2492 5 8 0.8679 1.5351 2.0594 6 7 1.8471 3.4354 1.4660 7 6 1.3784 4.1081 2.6800 8 6 1.9937 5.5068 2.7580 9 1 1.7314 6.0771 1.8669 10 6 1.4811 6.2361 4.0177 11 6 2.7402 7.0034 4.5085 12 6 3.8722 6.0078 4.1525 13 7 3.4557 5.4041 2.8737 14 6 4.2921 4.8417 1.9467 15 1 3.9806 3.9633 1.4009 16 6 5.5402 5.4006 1.7084 17 7 6.4537 4.7158 1.0536 18 14 5.9232 7.1245 2.3172 19 1 6.5596 7.0466 3.6566 20 1 6.8498 7.7906 1.3669 21 1 4.6646 7.9070 2.4120 22 6 2.0164 -0.6802 -1.2837 23 6 3.3628 -1.3723 -0.9260 24 16 2.9761 -1.9342 0.7818 25 8 4.1152 -1.8504 1.6273 26 8 2.1263 -3.0731 0.7783 27 7 1.9982 -0.6514 1.2252 28 1 -0.3633 0.5029 -0.8963 29 1 -0.3633 -1.0276 0.0124 30 1 -0.3634 0.5247 0.8836 31 1 1.6236 1.9660 -0.8757 32 1 3.1070 1.4674 -0.0276 33 1 2.3846 3.9197 0.8199 34 1 0.2919 4.1901 2.6536 35 1 1.6779 3.5302 3.5543 36 1 0.6793 6.9291 3.7627 37 1 1.1489 5.5202 4.7696 38 1 2.6975 7.1784 5.5835 39 1 2.8599 7.9413 3.9660 40 1 3.9598 5.2417 4.9229 41 1 4.8181 6.5360 4.0324 42 1 7.3260 5.1062 0.8874 43 1 1.2894 -1.4227 -1.6128 44 1 2.1733 0.0632 -2.0652 45 1 4.1889 -0.6613 -0.9326 46 1 3.5641 -2.2162 -1.5858 47 1 1.7797 -0.3865 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691105543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:54 Heat of formation + Delta-G solvation = -67.847090 kcal Electronic energy + Delta-G solvation = -30077.568360 eV Core-core repulsion = 26002.701845 eV Total energy + Delta-G solvation = -4074.866515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -40.06586 -38.37625 -37.39449 -36.88437 -35.79609 -34.05263 -32.72487 -31.78402 -30.76754 -30.04132 -29.55673 -27.75401 -24.96937 -24.25770 -23.57065 -21.12977 -20.57983 -19.97488 -19.47050 -19.45824 -17.50278 -17.41696 -16.52384 -16.28085 -16.03172 -15.73591 -15.34008 -15.21483 -14.82752 -14.49002 -14.34638 -13.83151 -13.63552 -13.37794 -13.36041 -13.15051 -12.67627 -12.58075 -12.48573 -12.11748 -12.06504 -11.98266 -11.90860 -11.82903 -11.55746 -11.39513 -11.33842 -11.26165 -10.96390 -10.88156 -10.74893 -10.54628 -10.53023 -10.24981 -9.90705 -9.60843 -9.36366 -9.24258 -8.68139 -8.41011 -6.90336 -6.09609 -3.57259 0.29501 2.66338 3.04901 3.24967 3.38186 3.42757 3.62524 3.64224 3.88724 4.15202 4.41581 4.44627 4.58578 4.85691 4.86442 5.05930 5.08100 5.17889 5.27148 5.29459 5.37783 5.38537 5.47066 5.47325 5.53376 5.60406 5.77064 5.79367 5.89199 5.96707 6.03931 6.06802 6.12423 6.21062 6.28017 6.33790 6.47938 6.52541 6.79508 6.80524 7.00557 7.43168 7.79820 8.06320 8.21296 8.67181 8.72888 9.54030 10.13905 11.04188 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.003428 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.520403 B = 8166.733702 C = 9120.552597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.161 3.839 3 C -0.153 4.153 4 C 0.517 3.483 5 O -0.556 6.556 6 N -0.706 5.706 7 C 0.116 3.884 8 C 0.143 3.857 9 H 0.047 0.953 10 C -0.121 4.121 11 C -0.136 4.136 12 C 0.116 3.884 13 N -0.601 5.601 14 C -0.258 4.258 15 H 0.091 0.909 16 C 0.035 3.965 17 N -0.902 5.902 18 Si 0.894 3.106 19 H -0.287 1.287 20 H -0.304 1.304 21 H -0.269 1.269 22 C -0.117 4.117 23 C -0.596 4.596 24 S 2.563 3.437 25 O -0.959 6.959 26 O -0.961 6.961 27 N -1.075 6.075 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.413 0.587 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.041 0.959 42 H 0.265 0.735 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.145 0.855 46 H 0.138 0.862 47 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 -5.133 -5.462 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 C -0.194 4.194 4 C 0.303 3.697 5 O -0.437 6.437 6 N -0.358 5.358 7 C -0.010 4.010 8 C 0.036 3.964 9 H 0.065 0.935 10 C -0.160 4.160 11 C -0.174 4.174 12 C -0.008 4.008 13 N -0.328 5.328 14 C -0.386 4.386 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.543 5.543 18 Si 0.726 3.274 19 H -0.216 1.216 20 H -0.233 1.233 21 H -0.194 1.194 22 C -0.156 4.156 23 C -0.726 4.726 24 S 2.657 3.343 25 O -0.949 6.949 26 O -0.950 6.950 27 N -0.845 5.845 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.252 0.748 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.131 0.869 45 H 0.164 0.836 46 H 0.156 0.844 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.909 -6.434 -4.526 13.449 hybrid contribution 0.710 1.885 -0.137 2.019 sum -10.199 -4.549 -4.663 12.102 Atomic orbital electron populations 1.22455 0.92950 1.02979 1.04041 1.20218 0.96715 0.92052 0.84043 1.22245 1.03970 0.95460 0.97758 1.20328 0.79585 0.82036 0.87725 1.90500 1.40468 1.65129 1.47611 1.46271 1.53732 1.11563 1.24269 1.21904 0.96748 0.94755 0.87560 1.21274 0.86316 0.92342 0.96465 0.93510 1.22530 0.97261 0.98800 0.97377 1.22820 0.95886 0.98749 0.99977 1.21904 0.95621 0.93978 0.89281 1.44664 1.00827 1.70416 1.16863 1.18630 0.96582 1.07226 1.16113 0.89230 1.25462 0.96825 0.97559 0.96768 1.69768 1.04686 1.36825 1.43051 0.86648 0.77530 0.86458 0.76763 1.21552 1.23278 1.19389 1.22529 0.93751 1.01759 0.97548 1.30802 1.05953 1.12045 1.23810 1.06538 0.75086 0.74591 0.78075 1.93635 1.51533 1.86420 1.63268 1.93629 1.66025 1.49099 1.86263 1.55071 1.67087 1.49268 1.13097 0.92344 0.92115 0.88810 0.88145 0.87858 0.74787 0.93009 0.91737 0.91423 0.91295 0.91559 0.91614 0.95094 0.94140 0.92510 0.88304 0.86889 0.83642 0.84353 0.71216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 8.17 37.16 0.30 -1.48 16 2 C 0.16 1.77 0.83 -131.74 -0.11 1.66 16 3 C -0.15 -1.83 4.67 -27.88 -0.13 -1.96 16 4 C 0.52 8.10 7.31 -10.98 -0.08 8.02 16 5 O -0.56 -9.66 11.78 5.56 0.07 -9.59 16 6 N -0.71 -11.72 4.36 -60.29 -0.26 -11.98 16 7 C 0.12 1.95 5.17 -4.04 -0.02 1.93 16 8 C 0.14 2.51 3.31 -66.95 -0.22 2.28 16 9 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 10 C -0.12 -1.77 6.50 -24.76 -0.16 -1.93 16 11 C -0.14 -2.19 7.09 -24.45 -0.17 -2.36 16 12 C 0.12 2.38 6.18 -2.53 -0.02 2.37 16 13 N -0.60 -13.09 2.67 -162.58 -0.43 -13.52 16 14 C -0.26 -6.48 9.47 -15.06 -0.14 -6.62 16 15 H 0.09 2.28 5.50 -52.48 -0.29 1.99 16 16 C 0.04 0.95 5.47 -17.44 -0.10 0.85 16 17 N -0.90 -25.80 13.97 55.49 0.78 -25.02 16 18 Si 0.89 21.49 24.77 -169.99 -4.21 17.28 16 19 H -0.29 -6.92 6.83 56.52 0.39 -6.53 16 20 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.27 -6.22 6.93 56.52 0.39 -5.83 16 22 C -0.12 -0.91 5.56 -25.27 -0.14 -1.05 16 23 C -0.60 -4.98 7.66 38.52 0.29 -4.68 16 24 S 2.56 33.01 6.47 -107.50 -0.70 32.32 16 25 O -0.96 -16.62 18.14 -57.40 -1.04 -17.67 16 26 O -0.96 -14.62 18.14 -57.40 -1.04 -15.66 16 27 N -1.08 -14.38 5.64 0.59 0.00 -14.37 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.25 5.55 -51.93 -0.29 0.96 16 31 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.41 7.07 6.21 -40.82 -0.25 6.81 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.91 3.13 -51.93 -0.16 0.74 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.10 0.63 7.82 -51.93 -0.41 0.23 16 44 H 0.11 0.64 7.74 -51.93 -0.40 0.24 16 45 H 0.15 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.44 6.62 7.07 -40.36 -0.29 6.33 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -35.08 369.09 -9.11 -44.19 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -7.14 Total: 11.44 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.69 Total: -2.98 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.08 Total: -64.90 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -2.02 Total: -42.92 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.21 Total: 17.28 kcal Atomic # 16 Polarization: 33.01 SS G_CDS: -0.70 Total: 32.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.08 -9.11 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691105543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.653 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds