Wall clock time and date at job start Wed Apr 1 2020 03:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 108.58194 * 2 1 4 4 C 1.50697 * 109.47316 * 297.99816 * 3 2 1 5 5 O 1.21280 * 119.99956 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00289 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00261 * 180.02562 * 6 4 3 8 8 C 1.53007 * 109.47204 * 185.11317 * 7 6 4 9 9 H 1.08998 * 109.87157 * 305.50544 * 8 7 6 10 10 C 1.54322 * 109.88089 * 66.68363 * 8 7 6 11 11 C 1.55162 * 102.94032 * 141.61208 * 10 8 7 12 12 C 1.54907 * 101.57998 * 324.49264 * 11 10 8 13 13 N 1.47019 * 109.87937 * 184.49150 * 8 7 6 14 14 C 1.36935 * 125.65189 * 61.68200 * 13 8 7 15 15 H 1.08004 * 120.00127 * 14.81117 * 14 13 8 16 16 C 1.38816 * 120.00181 * 194.82085 * 14 13 8 17 17 N 1.31621 * 120.00029 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00111 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47011 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46967 * 119.99803 * 18 16 14 21 21 H 1.48501 * 109.47273 * 240.00081 * 18 16 14 22 22 C 1.53204 * 108.64753 * 118.00213 * 2 1 3 23 23 C 1.55561 * 106.24211 * 93.38164 * 22 2 1 24 24 S 1.83894 * 99.64091 * 36.98827 * 23 22 2 25 25 O 1.42099 * 111.46598 * 75.85659 * 24 23 22 26 26 O 1.42092 * 111.46685 * 215.90834 * 24 23 22 27 27 N 1.46450 * 108.50428 * 242.07921 * 2 1 3 28 28 H 1.09000 * 109.46994 * 302.00123 * 1 2 3 29 29 H 1.08994 * 109.47282 * 62.00138 * 1 2 3 30 30 H 1.08999 * 109.46753 * 182.00331 * 1 2 3 31 31 H 1.09006 * 109.47070 * 57.99971 * 3 2 1 32 32 H 1.09002 * 109.47052 * 177.99549 * 3 2 1 33 33 H 0.97003 * 120.00130 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.46963 * 305.11051 * 7 6 4 35 35 H 1.08997 * 109.47379 * 65.11058 * 7 6 4 36 36 H 1.09003 * 110.71910 * 259.96976 * 10 8 7 37 37 H 1.09000 * 110.72430 * 23.24660 * 10 8 7 38 38 H 1.09002 * 110.99903 * 206.42353 * 11 10 8 39 39 H 1.08995 * 111.03517 * 82.58389 * 11 10 8 40 40 H 1.08990 * 110.37123 * 278.17185 * 12 11 10 41 41 H 1.09003 * 110.45486 * 155.89544 * 12 11 10 42 42 H 0.96998 * 120.00113 * 180.02562 * 17 16 14 43 43 H 1.09007 * 110.09862 * 334.18882 * 22 2 1 44 44 H 1.08997 * 110.14911 * 212.60602 * 22 2 1 45 45 H 1.09000 * 111.36718 * 154.59479 * 23 22 2 46 46 H 1.09004 * 111.36679 * 279.38624 * 23 22 2 47 47 H 0.97003 * 126.08354 * 60.66590 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0176 1.4502 0.0000 4 6 1.5455 2.1389 -1.2545 5 8 0.8838 1.5299 -2.0682 6 7 1.8577 3.4319 -1.4717 7 6 1.3983 4.1015 -2.6909 8 6 1.9904 5.5110 -2.7528 9 1 1.7511 6.0539 -1.8384 10 6 3.5209 5.4298 -2.9336 11 6 3.8183 6.6004 -3.9076 12 6 2.5655 6.5732 -4.8182 13 7 1.4509 6.2293 -3.9165 14 6 0.1317 6.5301 -4.1276 15 1 -0.5759 6.4551 -3.3152 16 6 -0.2960 6.9311 -5.3859 17 7 0.5664 7.0227 -6.3759 18 14 -2.0957 7.3406 -5.6740 19 1 -2.8532 7.1588 -4.4098 20 1 -2.2164 8.7501 -6.1255 21 1 -2.6482 6.4380 -6.7157 22 6 2.0199 -0.6815 1.2817 23 6 2.2425 -2.1783 0.9208 24 16 2.8964 -1.9892 -0.7875 25 8 4.2475 -1.5491 -0.7815 26 8 2.4502 -3.0394 -1.6343 27 7 1.9949 -0.6503 -1.2271 28 1 -0.3633 0.5446 0.8715 29 1 -0.3633 0.4824 -0.9073 30 1 -0.3633 -1.0270 0.0359 31 1 1.6171 1.9681 0.8716 32 1 3.1069 1.4673 0.0359 33 1 2.3860 3.9193 -0.8204 34 1 1.7228 3.5326 -3.5622 35 1 0.3101 4.1646 -2.6829 36 1 4.0302 5.5812 -1.9818 37 1 3.8067 4.4763 -3.3778 38 1 4.7239 6.4091 -4.4832 39 1 3.8911 7.5466 -3.3714 40 1 2.6754 5.8137 -5.5921 41 1 2.4007 7.5519 -5.2689 42 1 0.2676 7.3033 -7.2550 43 1 1.2665 -0.5930 2.0645 44 1 2.9567 -0.2323 1.6113 45 1 2.9784 -2.6403 1.5789 46 1 1.3038 -2.7323 0.9277 47 1 1.8120 -0.3572 -2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691105545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:04 Heat of formation + Delta-G solvation = -107.308284 kcal Electronic energy + Delta-G solvation = -29316.805235 eV Core-core repulsion = 25240.227554 eV Total energy + Delta-G solvation = -4076.577681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.22484 -39.56532 -38.54905 -38.00633 -36.88700 -35.65047 -34.40815 -32.59560 -31.92582 -31.32997 -30.34351 -28.56076 -26.70004 -25.71303 -24.76355 -22.08979 -21.69673 -21.32995 -20.88599 -20.45306 -18.82682 -18.46472 -17.72468 -17.43577 -17.28517 -16.80125 -16.58269 -16.44604 -16.07480 -15.72295 -15.62338 -15.15262 -14.83277 -14.65043 -14.11212 -14.02085 -13.97375 -13.67656 -13.54567 -13.51196 -13.19177 -13.16900 -13.04944 -13.00924 -12.86129 -12.73789 -12.64689 -12.43539 -12.06920 -11.99188 -11.87549 -11.78324 -11.70335 -11.49575 -11.41256 -11.38580 -10.70655 -10.59264 -10.30741 -9.94988 -8.86649 -7.90080 -5.27623 -0.63289 1.42425 1.44667 1.53816 1.71182 1.80206 2.26335 2.49670 2.74498 3.09172 3.30150 3.40491 3.58049 3.71346 3.76282 3.94125 4.00205 4.02579 4.12898 4.26414 4.31880 4.47201 4.52384 4.59542 4.65108 4.73438 4.76498 4.79498 4.91570 4.96298 4.97339 5.00569 5.10400 5.14990 5.22402 5.32232 5.40289 5.46022 5.58160 5.64193 5.71465 5.76272 6.21728 6.26264 6.71991 7.07393 7.44374 7.75213 8.41346 9.21268 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002570 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.707316 B =10890.908923 C =11477.718533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.147 3.853 3 C -0.142 4.142 4 C 0.503 3.497 5 O -0.579 6.579 6 N -0.711 5.711 7 C 0.131 3.869 8 C 0.148 3.852 9 H 0.054 0.946 10 C -0.112 4.112 11 C -0.134 4.134 12 C 0.173 3.827 13 N -0.612 5.612 14 C -0.236 4.236 15 H 0.078 0.922 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.297 1.297 22 C -0.113 4.113 23 C -0.548 4.548 24 S 2.545 3.455 25 O -0.997 6.997 26 O -1.017 7.017 27 N -1.090 6.090 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.415 0.585 34 H 0.029 0.971 35 H 0.031 0.969 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.072 0.928 40 H -0.012 1.012 41 H 0.035 0.965 42 H 0.247 0.753 43 H 0.150 0.850 44 H 0.122 0.878 45 H 0.176 0.824 46 H 0.161 0.839 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.324 -14.354 24.994 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.057 3.943 3 C -0.183 4.183 4 C 0.291 3.709 5 O -0.459 6.459 6 N -0.364 5.364 7 C 0.004 3.996 8 C 0.041 3.959 9 H 0.072 0.928 10 C -0.150 4.150 11 C -0.173 4.173 12 C 0.048 3.952 13 N -0.336 5.336 14 C -0.366 4.366 15 H 0.096 0.904 16 C -0.256 4.256 17 N -0.595 5.595 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.216 1.216 21 H -0.224 1.224 22 C -0.152 4.152 23 C -0.684 4.684 24 S 2.645 3.355 25 O -0.986 6.986 26 O -1.007 7.007 27 N -0.858 5.858 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.138 0.862 33 H 0.252 0.748 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.006 0.994 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.168 0.832 44 H 0.140 0.860 45 H 0.193 0.807 46 H 0.179 0.821 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 6.466 -15.232 23.698 28.904 hybrid contribution -1.505 0.886 -1.328 2.194 sum 4.961 -14.346 22.371 27.035 Atomic orbital electron populations 1.22483 0.93732 1.02994 1.03540 1.20643 0.96418 0.92565 0.84667 1.22328 1.04630 0.95318 0.96045 1.21418 0.78862 0.81477 0.89104 1.90593 1.40909 1.65449 1.48979 1.45919 1.55549 1.11961 1.22975 1.21567 0.97727 0.94052 0.86219 1.21350 0.93784 0.89452 0.91321 0.92784 1.22589 0.93424 0.98137 1.00802 1.22870 0.97450 0.98875 0.98061 1.21250 0.85681 0.97358 0.90885 1.44764 1.03168 1.63618 1.22099 1.19336 0.84644 1.38263 0.94324 0.90377 1.25712 1.01638 1.02724 0.95516 1.70154 1.33958 1.54057 1.01340 0.85108 0.80150 0.76886 0.77814 1.18884 1.21569 1.22435 1.22719 1.07418 0.89270 0.95826 1.30580 1.15001 1.05154 1.17647 1.06881 0.74453 0.73657 0.80467 1.93592 1.36356 1.80961 1.87704 1.93536 1.82369 1.57759 1.67060 1.55219 1.71210 1.45829 1.13506 0.89504 0.93036 0.91695 0.83755 0.86165 0.74773 0.95225 0.95008 0.87505 0.92137 0.90224 0.90930 0.99405 0.94658 0.94395 0.83178 0.85959 0.80657 0.82081 0.72802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 8.13 71.98 0.59 -1.95 16 2 C 0.15 1.92 0.83 3.68 0.00 1.92 16 3 C -0.14 -1.77 4.69 29.85 0.14 -1.63 16 4 C 0.50 12.48 7.32 87.66 0.64 13.12 16 5 O -0.58 -19.71 11.77 -3.03 -0.04 -19.75 16 6 N -0.71 -17.75 5.36 -463.07 -2.48 -20.23 16 7 C 0.13 4.87 5.10 86.38 0.44 5.31 16 8 C 0.15 5.48 3.19 45.34 0.14 5.63 16 9 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 10 C -0.11 -3.33 6.20 31.78 0.20 -3.13 16 11 C -0.13 -4.63 7.09 31.99 0.23 -4.40 16 12 C 0.17 8.49 5.41 86.85 0.47 8.96 16 13 N -0.61 -30.50 3.13 -668.25 -2.09 -32.59 16 14 C -0.24 -13.10 9.72 84.03 0.82 -12.28 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16 17 N -0.95 -57.67 10.58 21.65 0.23 -57.44 16 18 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 22 C -0.11 -0.36 5.56 31.55 0.18 -0.19 16 23 C -0.55 -2.61 7.66 72.86 0.56 -2.05 16 24 S 2.55 48.37 6.47 -56.49 -0.37 48.01 16 25 O -1.00 -25.40 18.14 -127.81 -2.32 -27.72 16 26 O -1.02 -29.18 18.14 -127.81 -2.32 -31.50 16 27 N -1.09 -22.75 5.65 -152.02 -0.86 -23.61 16 28 H 0.09 0.81 8.10 -2.39 -0.02 0.79 16 29 H 0.05 1.27 5.65 -2.39 -0.01 1.25 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.14 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.12 1.14 8.10 -2.39 -0.02 1.12 16 33 H 0.42 6.96 8.40 -92.71 -0.78 6.19 16 34 H 0.03 1.29 8.03 -2.39 -0.02 1.28 16 35 H 0.03 1.38 7.86 -2.39 -0.02 1.37 16 36 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 1.86 7.78 -2.39 -0.02 1.85 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H -0.01 -0.67 8.06 -2.39 -0.02 -0.69 16 41 H 0.03 1.95 6.94 -2.39 -0.02 1.93 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.15 -0.43 7.75 -2.38 -0.02 -0.45 16 44 H 0.12 -0.05 7.80 -2.39 -0.02 -0.07 16 45 H 0.18 -0.23 8.14 -2.39 -0.02 -0.24 16 46 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.43 11.67 6.97 -92.99 -0.65 11.02 16 Total: -1.00 -90.35 379.21 -3.79 -94.13 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.44 Total: 16.06 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.86 Total: 6.19 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -5.20 Total: -133.87 kcal Atomic # 8 Polarization: -74.30 SS G_CDS: -4.67 Total: -78.98 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 48.37 SS G_CDS: -0.37 Total: 48.01 kcal Total: -90.35 -3.79 -94.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691105545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.176 kcal (2) G-P(sol) polarization free energy of solvation -90.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds