Wall clock time and date at job start Wed Apr 1 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 108.43489 * 2 1 4 4 C 1.50699 * 109.47251 * 297.91748 * 3 2 1 5 5 O 1.21280 * 120.00114 * 0.02562 * 4 3 2 6 6 N 1.34784 * 120.00167 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99954 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.50030 * 325.07362 * 7 6 4 9 9 C 1.53042 * 109.49666 * 204.99993 * 7 6 4 10 10 C 1.53036 * 109.53429 * 178.68510 * 9 7 6 11 11 C 1.53193 * 109.31652 * 61.36983 * 10 9 7 12 12 N 1.46926 * 108.77514 * 305.36549 * 11 10 9 13 13 C 1.36937 * 120.62762 * 233.58387 * 12 11 10 14 14 H 1.08001 * 119.99619 * 152.62431 * 13 12 11 15 15 C 1.38807 * 119.99937 * 332.62569 * 13 12 11 16 16 N 1.31624 * 119.99777 * 159.34652 * 15 13 12 17 17 Si 1.86797 * 120.00292 * 339.34850 * 15 13 12 18 18 H 1.48500 * 109.47237 * 92.94445 * 17 15 13 19 19 H 1.48507 * 109.46925 * 212.94391 * 17 15 13 20 20 H 1.48499 * 109.47006 * 332.93682 * 17 15 13 21 21 C 1.46924 * 118.73792 * 53.60231 * 12 11 10 22 22 C 1.53206 * 108.64835 * 117.91963 * 2 1 3 23 23 C 1.55557 * 106.29127 * 148.68776 * 22 2 1 24 24 S 1.83902 * 99.64366 * 322.97979 * 23 22 2 25 25 O 1.42097 * 111.47049 * 144.08930 * 24 23 22 26 26 O 1.42107 * 111.46520 * 284.14328 * 24 23 22 27 27 N 1.46596 * 108.70140 * 242.01859 * 2 1 3 28 28 H 1.09004 * 109.46787 * 302.07911 * 1 2 3 29 29 H 1.08991 * 109.47395 * 62.08146 * 1 2 3 30 30 H 1.09003 * 109.47159 * 182.08633 * 1 2 3 31 31 H 1.09002 * 109.47146 * 57.91738 * 3 2 1 32 32 H 1.08996 * 109.47652 * 177.91707 * 3 2 1 33 33 H 0.97001 * 119.99362 * 0.02562 * 6 4 3 34 34 H 1.08997 * 109.46371 * 298.70927 * 9 7 6 35 35 H 1.08998 * 109.45565 * 58.68426 * 9 7 6 36 36 H 1.09001 * 109.49725 * 181.32270 * 10 9 7 37 37 H 1.08995 * 109.50228 * 301.38161 * 10 9 7 38 38 H 1.09008 * 109.58176 * 65.14759 * 11 10 9 39 39 H 1.08997 * 109.58837 * 185.42780 * 11 10 9 40 40 H 0.96996 * 120.00326 * 180.02562 * 16 15 13 41 41 H 1.09005 * 109.58598 * 186.60655 * 21 12 11 42 42 H 1.08994 * 109.58635 * 66.18175 * 21 12 11 43 43 H 1.09000 * 110.09944 * 29.46253 * 22 2 1 44 44 H 1.08995 * 110.09552 * 267.91240 * 22 2 1 45 45 H 1.08997 * 111.37168 * 80.58450 * 23 22 2 46 46 H 1.08999 * 111.36820 * 205.37453 * 23 22 2 47 47 H 0.97002 * 126.05659 * 57.16292 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0138 1.4514 0.0000 4 6 1.5416 2.1384 -1.2554 5 8 0.8825 1.5273 -2.0698 6 7 1.8508 3.4321 -1.4728 7 6 1.3922 4.0997 -2.6935 8 1 1.3963 3.3893 -3.5202 9 6 2.3263 5.2675 -3.0188 10 6 1.8672 5.9453 -4.3118 11 6 0.4514 6.4979 -4.1191 12 7 -0.4237 5.4085 -3.6652 13 6 -1.5854 5.1231 -4.3317 14 1 -1.9887 4.1214 -4.3093 15 6 -2.2446 6.1212 -5.0360 16 7 -3.0980 5.8023 -5.9861 17 14 -1.9206 7.9167 -4.6357 18 1 -0.8450 8.4346 -5.5190 19 1 -3.1611 8.7038 -4.8525 20 1 -1.4983 8.0392 -3.2173 21 6 -0.0289 4.6314 -2.4824 22 6 2.0199 -0.6797 1.2827 23 6 3.3681 -1.3680 0.9242 24 16 2.9820 -1.9314 -0.7832 25 8 4.1202 -1.8445 -1.6294 26 8 2.1347 -3.0722 -0.7753 27 7 2.0000 -0.6515 -1.2262 28 1 -0.3633 0.5458 0.8708 29 1 -0.3634 0.4811 -0.9080 30 1 -0.3634 -1.0270 0.0374 31 1 1.6109 1.9687 0.8707 32 1 3.1029 1.4714 0.0373 33 1 2.3776 3.9209 -0.8213 34 1 2.3033 5.9893 -2.2024 35 1 3.3428 4.8949 -3.1455 36 1 2.5465 6.7621 -4.5554 37 1 1.8670 5.2180 -5.1236 38 1 0.4672 7.2900 -3.3704 39 1 0.0827 6.8959 -5.0645 40 1 -3.5583 6.4997 -6.4786 41 1 -0.7157 3.7955 -2.3485 42 1 -0.0524 5.2712 -1.6004 43 1 1.2952 -1.4242 1.6123 44 1 2.1750 0.0636 2.0646 45 1 4.1922 -0.6546 0.9302 46 1 3.5713 -2.2112 1.5843 47 1 1.7803 -0.3873 -2.1334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692109184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:14 Heat of formation + Delta-G solvation = -73.366368 kcal Electronic energy + Delta-G solvation = -29707.450345 eV Core-core repulsion = 25632.344496 eV Total energy + Delta-G solvation = -4075.105849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.44231 -38.55919 -37.40251 -37.08989 -36.05597 -34.50134 -32.59008 -32.06002 -30.99067 -30.86655 -29.53386 -27.72561 -25.34070 -24.52682 -22.82827 -22.02082 -20.94819 -20.27864 -19.73222 -19.64371 -17.74929 -17.25638 -16.83729 -16.49568 -16.03093 -15.77118 -15.57312 -15.22547 -14.98360 -14.65801 -14.25437 -13.95974 -13.87408 -13.77411 -13.60455 -13.27253 -12.97585 -12.82765 -12.60643 -12.36074 -12.29933 -12.18253 -12.14834 -12.07023 -11.76913 -11.56382 -11.52638 -11.20499 -11.17812 -10.93143 -10.83380 -10.77336 -10.19887 -10.01974 -9.77348 -9.64719 -9.58555 -9.44857 -9.03620 -8.54681 -6.99382 -5.94239 -3.31168 0.01333 2.39287 2.69215 3.16991 3.30035 3.35301 3.46468 3.49053 3.60847 3.85451 4.12215 4.25799 4.51989 4.56918 4.68203 4.83883 4.95976 4.99526 5.05868 5.08930 5.15011 5.22878 5.24660 5.36916 5.39709 5.44487 5.49184 5.75909 5.78142 5.89605 5.92394 5.99191 6.14958 6.27717 6.34053 6.38507 6.53348 6.57809 6.61859 6.73644 6.89733 7.16399 7.59844 7.95659 8.32059 8.36144 8.93868 9.71560 10.07024 11.21680 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.002631 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.923284 B =10639.061965 C =10948.914978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.159 3.841 3 C -0.151 4.151 4 C 0.514 3.486 5 O -0.527 6.527 6 N -0.723 5.723 7 C 0.124 3.876 8 H 0.091 0.909 9 C -0.116 4.116 10 C -0.132 4.132 11 C 0.122 3.878 12 N -0.601 5.601 13 C -0.260 4.260 14 H 0.087 0.913 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 0.883 3.117 18 H -0.288 1.288 19 H -0.303 1.303 20 H -0.272 1.272 21 C 0.146 3.854 22 C -0.117 4.117 23 C -0.597 4.597 24 S 2.564 3.436 25 O -0.963 6.963 26 O -0.954 6.954 27 N -1.077 6.077 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.395 0.605 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.020 0.980 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.040 -9.285 19.318 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 C -0.192 4.192 4 C 0.300 3.700 5 O -0.403 6.403 6 N -0.374 5.374 7 C 0.018 3.982 8 H 0.109 0.891 9 C -0.154 4.154 10 C -0.172 4.172 11 C -0.004 4.004 12 N -0.325 5.325 13 C -0.388 4.388 14 H 0.104 0.896 15 C -0.175 4.175 16 N -0.550 5.550 17 Si 0.714 3.286 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.197 1.197 21 C 0.019 3.981 22 C -0.156 4.156 23 C -0.727 4.727 24 S 2.658 3.342 25 O -0.952 6.952 26 O -0.943 6.943 27 N -0.848 5.848 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.228 0.772 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.120 0.880 44 H 0.130 0.870 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 15.696 -10.541 18.071 26.154 hybrid contribution 0.276 2.074 0.677 2.199 sum 15.972 -8.467 18.749 26.044 Atomic orbital electron populations 1.22470 0.92364 1.03203 1.04675 1.20272 0.97239 0.91609 0.84056 1.22266 1.03011 0.96130 0.97835 1.20387 0.79810 0.81842 0.87935 1.90625 1.38479 1.64506 1.46723 1.46140 1.55721 1.11588 1.23920 1.21715 0.95863 0.94092 0.86483 0.89086 1.21674 0.97932 0.96928 0.98869 1.21996 0.98301 1.00010 0.96877 1.21394 0.89462 0.90751 0.98757 1.44281 1.22107 1.36755 1.29346 1.18939 0.98578 0.95779 1.25480 0.89590 1.25270 0.96804 0.97718 0.97724 1.69844 1.30648 1.32849 1.21631 0.86944 0.75823 0.86877 0.78956 1.21625 1.23170 1.19684 1.21197 0.92816 0.95013 0.89085 1.22532 0.93761 1.01906 0.97384 1.30803 1.05631 1.12011 1.24243 1.06533 0.75083 0.74678 0.77899 1.93615 1.51748 1.86553 1.63331 1.93657 1.65784 1.48842 1.86050 1.55177 1.66737 1.49627 1.13221 0.92066 0.88545 0.91835 0.87799 0.88644 0.77223 0.92181 0.92472 0.92272 0.91386 0.95711 0.90769 0.92748 0.91458 0.96170 0.88010 0.86973 0.84153 0.84249 0.71005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.16 37.16 0.30 -1.29 16 2 C 0.16 1.24 0.83 -131.66 -0.11 1.13 16 3 C -0.15 -1.04 4.65 -27.89 -0.13 -1.17 16 4 C 0.51 6.03 7.29 -10.98 -0.08 5.95 16 5 O -0.53 -8.26 11.46 5.56 0.06 -8.20 16 6 N -0.72 -8.22 5.08 -53.69 -0.27 -8.50 16 7 C 0.12 1.94 2.61 -67.81 -0.18 1.76 16 8 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 9 C -0.12 -1.61 5.35 -26.69 -0.14 -1.75 16 10 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 11 C 0.12 2.58 4.20 -3.71 -0.02 2.56 16 12 N -0.60 -14.16 2.77 -172.32 -0.48 -14.64 16 13 C -0.26 -7.34 10.04 -15.06 -0.15 -7.49 16 14 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 15 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 16 N -0.91 -28.04 13.97 55.49 0.78 -27.27 16 17 Si 0.88 22.23 24.35 -169.99 -4.14 18.09 16 18 H -0.29 -6.96 6.62 56.52 0.37 -6.59 16 19 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 20 H -0.27 -6.67 6.63 56.52 0.38 -6.29 16 21 C 0.15 2.84 6.09 -3.71 -0.02 2.82 16 22 C -0.12 -0.52 5.56 -25.26 -0.14 -0.66 16 23 C -0.60 -2.58 7.66 38.52 0.29 -2.29 16 24 S 2.56 24.48 6.47 -107.50 -0.70 23.79 16 25 O -0.96 -12.75 18.14 -57.37 -1.04 -13.79 16 26 O -0.95 -12.43 18.14 -57.37 -1.04 -13.47 16 27 N -1.08 -11.00 5.65 0.67 0.00 -11.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 1.25 5.65 -51.93 -0.29 0.95 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.10 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.39 3.14 8.60 -40.82 -0.35 2.78 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.51 7.08 -51.92 -0.37 0.15 16 39 H 0.07 1.74 4.50 -51.93 -0.23 1.51 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.07 1.43 7.93 -51.93 -0.41 1.02 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.40 7.80 -51.93 -0.41 0.00 16 44 H 0.11 0.21 7.75 -51.93 -0.40 -0.19 16 45 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.44 5.41 7.03 -40.36 -0.28 5.12 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -38.47 369.91 -9.27 -47.75 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.40 Total: 3.82 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.62 Total: -2.18 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.03 Total: -61.40 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -2.02 Total: -35.45 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Atomic # 16 Polarization: 24.48 SS G_CDS: -0.70 Total: 23.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.47 -9.27 -47.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692109184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.619 kcal (2) G-P(sol) polarization free energy of solvation -38.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds