Wall clock time and date at job start Wed Apr 1 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 108.43489 * 2 1 4 4 C 1.50699 * 109.47251 * 297.91748 * 3 2 1 5 5 O 1.21280 * 120.00114 * 0.02562 * 4 3 2 6 6 N 1.34784 * 120.00167 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99954 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.50030 * 325.07362 * 7 6 4 9 9 C 1.53042 * 109.49666 * 204.99993 * 7 6 4 10 10 C 1.53036 * 109.53429 * 178.68510 * 9 7 6 11 11 C 1.53193 * 109.31652 * 61.36983 * 10 9 7 12 12 N 1.46926 * 108.77514 * 305.36549 * 11 10 9 13 13 C 1.36937 * 120.62762 * 233.58387 * 12 11 10 14 14 H 1.08001 * 119.99619 * 152.62431 * 13 12 11 15 15 C 1.38807 * 119.99937 * 332.62569 * 13 12 11 16 16 N 1.31624 * 119.99777 * 159.34652 * 15 13 12 17 17 Si 1.86797 * 120.00292 * 339.34850 * 15 13 12 18 18 H 1.48500 * 109.47237 * 92.94445 * 17 15 13 19 19 H 1.48507 * 109.46925 * 212.94391 * 17 15 13 20 20 H 1.48499 * 109.47006 * 332.93682 * 17 15 13 21 21 C 1.46924 * 118.73792 * 53.60231 * 12 11 10 22 22 C 1.53206 * 108.64835 * 117.91963 * 2 1 3 23 23 C 1.55557 * 106.29127 * 148.68776 * 22 2 1 24 24 S 1.83902 * 99.64366 * 322.97979 * 23 22 2 25 25 O 1.42097 * 111.47049 * 144.08930 * 24 23 22 26 26 O 1.42107 * 111.46520 * 284.14328 * 24 23 22 27 27 N 1.46596 * 108.70140 * 242.01859 * 2 1 3 28 28 H 1.09004 * 109.46787 * 302.07911 * 1 2 3 29 29 H 1.08991 * 109.47395 * 62.08146 * 1 2 3 30 30 H 1.09003 * 109.47159 * 182.08633 * 1 2 3 31 31 H 1.09002 * 109.47146 * 57.91738 * 3 2 1 32 32 H 1.08996 * 109.47652 * 177.91707 * 3 2 1 33 33 H 0.97001 * 119.99362 * 0.02562 * 6 4 3 34 34 H 1.08997 * 109.46371 * 298.70927 * 9 7 6 35 35 H 1.08998 * 109.45565 * 58.68426 * 9 7 6 36 36 H 1.09001 * 109.49725 * 181.32270 * 10 9 7 37 37 H 1.08995 * 109.50228 * 301.38161 * 10 9 7 38 38 H 1.09008 * 109.58176 * 65.14759 * 11 10 9 39 39 H 1.08997 * 109.58837 * 185.42780 * 11 10 9 40 40 H 0.96996 * 120.00326 * 180.02562 * 16 15 13 41 41 H 1.09005 * 109.58598 * 186.60655 * 21 12 11 42 42 H 1.08994 * 109.58635 * 66.18175 * 21 12 11 43 43 H 1.09000 * 110.09944 * 29.46253 * 22 2 1 44 44 H 1.08995 * 110.09552 * 267.91240 * 22 2 1 45 45 H 1.08997 * 111.37168 * 80.58450 * 23 22 2 46 46 H 1.08999 * 111.36820 * 205.37453 * 23 22 2 47 47 H 0.97002 * 126.05659 * 57.16292 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0138 1.4514 0.0000 4 6 1.5416 2.1384 -1.2554 5 8 0.8825 1.5273 -2.0698 6 7 1.8508 3.4321 -1.4728 7 6 1.3922 4.0997 -2.6935 8 1 1.3963 3.3893 -3.5202 9 6 2.3263 5.2675 -3.0188 10 6 1.8672 5.9453 -4.3118 11 6 0.4514 6.4979 -4.1191 12 7 -0.4237 5.4085 -3.6652 13 6 -1.5854 5.1231 -4.3317 14 1 -1.9887 4.1214 -4.3093 15 6 -2.2446 6.1212 -5.0360 16 7 -3.0980 5.8023 -5.9861 17 14 -1.9206 7.9167 -4.6357 18 1 -0.8450 8.4346 -5.5190 19 1 -3.1611 8.7038 -4.8525 20 1 -1.4983 8.0392 -3.2173 21 6 -0.0289 4.6314 -2.4824 22 6 2.0199 -0.6797 1.2827 23 6 3.3681 -1.3680 0.9242 24 16 2.9820 -1.9314 -0.7832 25 8 4.1202 -1.8445 -1.6294 26 8 2.1347 -3.0722 -0.7753 27 7 2.0000 -0.6515 -1.2262 28 1 -0.3633 0.5458 0.8708 29 1 -0.3634 0.4811 -0.9080 30 1 -0.3634 -1.0270 0.0374 31 1 1.6109 1.9687 0.8707 32 1 3.1029 1.4714 0.0373 33 1 2.3776 3.9209 -0.8213 34 1 2.3033 5.9893 -2.2024 35 1 3.3428 4.8949 -3.1455 36 1 2.5465 6.7621 -4.5554 37 1 1.8670 5.2180 -5.1236 38 1 0.4672 7.2900 -3.3704 39 1 0.0827 6.8959 -5.0645 40 1 -3.5583 6.4997 -6.4786 41 1 -0.7157 3.7955 -2.3485 42 1 -0.0524 5.2712 -1.6004 43 1 1.2952 -1.4242 1.6123 44 1 2.1750 0.0636 2.0646 45 1 4.1922 -0.6546 0.9302 46 1 3.5713 -2.2112 1.5843 47 1 1.7803 -0.3873 -2.1334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692109184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:13 Heat of formation + Delta-G solvation = -108.060175 kcal Electronic energy + Delta-G solvation = -29708.954782 eV Core-core repulsion = 25632.344496 eV Total energy + Delta-G solvation = -4076.610286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.31696 -39.67541 -38.44276 -37.97370 -36.88526 -35.89267 -34.27620 -32.70243 -32.57425 -31.82503 -30.65645 -28.57645 -27.20774 -25.06930 -24.10767 -23.73126 -21.75862 -21.35364 -20.86341 -20.43911 -18.79690 -18.46738 -18.06183 -17.39020 -17.29540 -16.78214 -16.61179 -16.37903 -15.97606 -15.64713 -15.48294 -15.27349 -15.01344 -14.77625 -14.55796 -14.38004 -14.11163 -14.00168 -13.76857 -13.55426 -13.30315 -13.21301 -13.16989 -13.04707 -12.79564 -12.59986 -12.54160 -12.50841 -12.41229 -12.09619 -11.85884 -11.82598 -11.65029 -11.48267 -11.36519 -11.34912 -10.82301 -10.50467 -10.30902 -10.03984 -8.92365 -8.19248 -5.52917 -0.62948 1.28901 1.40267 1.50876 1.71831 1.83172 2.26423 2.39931 2.73881 3.03631 3.11022 3.35150 3.41929 3.60405 3.71567 3.84936 3.98237 4.05787 4.07884 4.15292 4.33414 4.37757 4.45384 4.56329 4.65740 4.68333 4.71214 4.75792 4.78830 4.88588 4.94899 4.97434 5.00354 5.04088 5.07712 5.15981 5.22447 5.32533 5.41091 5.55904 5.69532 5.83384 6.09006 6.26265 6.75428 6.89233 7.50520 7.59592 7.96634 9.01320 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.002631 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.923284 B =10639.061965 C =10948.914978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.149 3.851 3 C -0.141 4.141 4 C 0.502 3.498 5 O -0.577 6.577 6 N -0.710 5.710 7 C 0.138 3.862 8 H 0.048 0.952 9 C -0.105 4.105 10 C -0.128 4.128 11 C 0.114 3.886 12 N -0.618 5.618 13 C -0.255 4.255 14 H 0.034 0.966 15 C -0.039 4.039 16 N -0.961 5.961 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.311 1.311 20 H -0.254 1.254 21 C 0.148 3.852 22 C -0.114 4.114 23 C -0.544 4.544 24 S 2.540 3.460 25 O -1.013 7.013 26 O -1.007 7.007 27 N -1.090 6.090 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.418 0.582 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.029 0.971 42 H 0.044 0.956 43 H 0.107 0.893 44 H 0.161 0.839 45 H 0.175 0.825 46 H 0.173 0.827 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.992 -6.769 24.377 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.058 3.942 3 C -0.182 4.182 4 C 0.290 3.710 5 O -0.456 6.456 6 N -0.363 5.363 7 C 0.031 3.969 8 H 0.066 0.934 9 C -0.143 4.143 10 C -0.167 4.167 11 C -0.011 4.011 12 N -0.343 5.343 13 C -0.385 4.385 14 H 0.052 0.948 15 C -0.234 4.234 16 N -0.607 5.607 17 Si 0.788 3.212 18 H -0.195 1.195 19 H -0.240 1.240 20 H -0.178 1.178 21 C 0.021 3.979 22 C -0.153 4.153 23 C -0.679 4.679 24 S 2.641 3.359 25 O -1.003 7.003 26 O -0.996 6.996 27 N -0.857 5.857 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.256 0.744 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.125 0.875 44 H 0.179 0.821 45 H 0.193 0.807 46 H 0.191 0.809 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 19.713 -8.046 23.156 31.457 hybrid contribution -1.019 1.175 -0.857 1.776 sum 18.695 -6.871 22.299 29.899 Atomic orbital electron populations 1.22434 0.94464 1.02358 1.03513 1.20636 0.95867 0.92957 0.84696 1.22389 1.05211 0.94687 0.95952 1.21485 0.78741 0.81674 0.89100 1.90648 1.40537 1.65583 1.48838 1.45902 1.55724 1.11688 1.22960 1.21159 0.94282 0.94207 0.87258 0.93399 1.21626 0.98438 0.96139 0.98085 1.21927 0.96131 1.00753 0.97940 1.21535 0.91313 0.90455 0.97767 1.44365 1.21283 1.38114 1.30545 1.18766 1.00423 0.93780 1.25509 0.94829 1.26021 0.97069 1.02836 0.97425 1.70008 1.32951 1.34403 1.23360 0.85709 0.75752 0.80020 0.79713 1.19506 1.24035 1.17810 1.21283 0.94526 0.93705 0.88352 1.22714 0.93392 1.03131 0.96025 1.30593 1.06861 1.13570 1.16919 1.07027 0.73999 0.74098 0.80823 1.93543 1.52689 1.86917 1.67102 1.93586 1.66865 1.51331 1.87868 1.55239 1.67220 1.49734 1.13512 0.89521 0.92992 0.92877 0.83709 0.85013 0.74432 0.89262 0.89375 0.88628 0.93731 0.93700 0.93511 0.92847 0.95184 0.93846 0.87480 0.82115 0.80712 0.80924 0.72828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 8.16 71.98 0.59 -2.58 16 2 C 0.15 1.96 0.83 3.65 0.00 1.96 16 3 C -0.14 -1.33 4.65 29.85 0.14 -1.19 16 4 C 0.50 11.13 7.29 87.66 0.64 11.77 16 5 O -0.58 -19.37 11.46 -3.03 -0.03 -19.40 16 6 N -0.71 -14.28 5.08 -442.16 -2.25 -16.52 16 7 C 0.14 4.19 2.61 45.07 0.12 4.31 16 8 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 9 C -0.11 -2.50 5.35 30.62 0.16 -2.33 16 10 C -0.13 -3.94 6.08 30.67 0.19 -3.75 16 11 C 0.11 4.61 4.20 86.36 0.36 4.97 16 12 N -0.62 -29.69 2.77 -699.08 -1.94 -31.62 16 13 C -0.26 -15.32 10.04 84.03 0.84 -14.47 16 14 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 15 C -0.04 -2.36 5.23 84.86 0.44 -1.92 16 16 N -0.96 -62.78 13.97 21.65 0.30 -62.48 16 17 Si 0.96 46.74 24.35 68.60 1.67 48.41 16 18 H -0.27 -12.13 6.62 99.48 0.66 -11.47 16 19 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 20 H -0.25 -11.50 6.63 99.48 0.66 -10.84 16 21 C 0.15 5.80 6.09 86.36 0.53 6.32 16 22 C -0.11 -0.37 5.56 31.54 0.18 -0.20 16 23 C -0.54 -1.76 7.66 72.86 0.56 -1.20 16 24 S 2.54 48.19 6.47 -56.49 -0.37 47.82 16 25 O -1.01 -27.74 18.14 -127.81 -2.32 -30.06 16 26 O -1.01 -27.84 18.14 -127.81 -2.32 -30.16 16 27 N -1.09 -22.80 5.65 -151.79 -0.86 -23.66 16 28 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.05 1.47 5.65 -2.39 -0.01 1.46 16 30 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 31 H 0.15 0.26 8.10 -2.39 -0.02 0.24 16 32 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.42 4.49 8.60 -92.71 -0.80 3.69 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.67 7.08 -2.38 -0.02 1.65 16 39 H 0.05 2.15 4.50 -2.39 -0.01 2.13 16 40 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 41 H 0.03 1.36 7.93 -2.38 -0.02 1.34 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.11 0.36 7.80 -2.39 -0.02 0.34 16 44 H 0.16 -0.82 7.75 -2.39 -0.02 -0.84 16 45 H 0.18 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.17 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.43 11.72 7.03 -93.00 -0.65 11.06 16 Total: -1.00 -98.18 369.91 -3.91 -102.08 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -0.55 Total: 13.89 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 4.75 Total: 1.70 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -4.74 Total: -134.28 kcal Atomic # 8 Polarization: -74.95 SS G_CDS: -4.67 Total: -79.62 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.67 Total: 48.41 kcal Atomic # 16 Polarization: 48.19 SS G_CDS: -0.37 Total: 47.82 kcal Total: -98.18 -3.91 -102.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692109184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.976 kcal (2) G-P(sol) polarization free energy of solvation -98.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds