Wall clock time and date at job start Wed Apr 1 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 110.91372 * 2 1 4 4 N 1.46496 * 109.47134 * 297.54593 * 3 2 1 5 5 C 1.36933 * 120.00449 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99734 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00600 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00218 * 179.97438 * 7 5 4 9 9 Si 1.86810 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46997 * 89.99944 * 9 7 5 11 11 H 1.48497 * 109.46713 * 209.99779 * 9 7 5 12 12 H 1.48497 * 109.46788 * 329.99592 * 9 7 5 13 13 C 1.55448 * 111.01067 * 124.05153 * 2 1 3 14 14 C 1.54321 * 102.96961 * 82.52458 * 13 2 1 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 2 16 16 C 1.34781 * 125.64203 * 181.03648 * 15 14 13 17 17 O 1.21692 * 119.99235 * 180.02562 * 16 15 14 18 18 C 1.46833 * 120.00553 * 0.02780 * 16 15 14 19 19 C 1.42393 * 128.40903 * 359.67440 * 18 16 15 20 20 N 1.29896 * 106.48370 * 179.84075 * 19 18 16 21 21 O 1.20729 * 112.91465 * 0.46086 * 20 19 18 22 22 C 1.34459 * 111.91053 * 359.70103 * 21 20 19 23 23 C 1.46428 * 127.24634 * 180.02562 * 22 21 20 24 24 C 1.36665 * 125.99189 * 359.69001 * 23 22 21 25 25 C 1.40436 * 106.70096 * 179.90644 * 24 23 22 26 26 C 1.35075 * 107.12331 * 0.35841 * 25 24 23 27 27 O 1.34081 * 108.77893 * 359.77708 * 26 25 24 28 28 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 29 29 H 1.08997 * 109.46961 * 182.44877 * 1 2 3 30 30 H 1.09003 * 109.46792 * 302.45175 * 1 2 3 31 31 H 1.08997 * 109.46833 * 62.45143 * 1 2 3 32 32 H 1.09001 * 109.47578 * 57.55102 * 3 2 1 33 33 H 1.09003 * 109.46933 * 177.54830 * 3 2 1 34 34 H 0.97006 * 119.99700 * 0.02562 * 4 3 2 35 35 H 0.96999 * 119.99685 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.70855 * 324.15262 * 13 2 1 37 37 H 1.08998 * 110.85957 * 200.96877 * 13 2 1 38 38 H 1.08998 * 109.88101 * 262.77542 * 14 13 2 39 39 H 1.09000 * 109.88483 * 141.60664 * 14 13 2 40 40 H 1.08003 * 126.76226 * 359.97438 * 19 18 16 41 41 H 1.08002 * 126.65170 * 0.04565 * 24 23 22 42 42 H 1.08004 * 126.44072 * 180.13357 * 25 24 23 43 43 H 1.07997 * 125.61525 * 179.79927 * 26 25 24 44 44 H 1.09002 * 110.36926 * 94.70918 * 28 15 14 45 45 H 1.08995 * 110.36556 * 216.92202 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 7 1.6539 2.1134 -1.2246 5 6 2.0267 3.4121 -1.4468 6 1 2.6326 3.9319 -0.7193 7 6 1.6270 4.0602 -2.6074 8 7 1.9850 5.3087 -2.8206 9 14 0.5797 3.1608 -3.8660 10 1 -0.8571 3.3667 -3.5521 11 1 0.8711 3.6912 -5.2220 12 1 0.8927 1.7098 -3.8241 13 6 2.0874 -0.8125 1.2023 14 6 2.0290 -2.2683 0.6934 15 7 2.0136 -2.2167 -0.7759 16 6 1.9457 -3.2822 -1.5985 17 8 1.9400 -3.1201 -2.8046 18 6 1.8785 -4.6383 -1.0395 19 6 1.8798 -5.0322 0.3288 20 7 1.8031 -6.3288 0.3392 21 8 1.7637 -6.8063 -0.7690 22 6 1.8037 -5.8609 -1.7243 23 6 1.7747 -6.0642 -3.1741 24 6 1.7067 -7.2694 -3.8149 25 6 1.7001 -6.9945 -5.1921 26 6 1.7714 -5.6527 -5.3301 27 8 1.8162 -5.0952 -4.1115 28 6 2.0853 -0.8067 -1.2002 29 1 -0.3633 -1.0267 0.0439 30 1 -0.3633 0.5515 0.8672 31 1 -0.3633 0.4753 -0.9111 32 1 1.6909 1.9655 0.8672 33 1 3.1650 1.4021 0.0440 34 1 1.1100 1.6463 -1.8781 35 1 1.7054 5.7616 -3.6315 36 1 1.4541 -0.6852 2.0803 37 1 3.1144 -0.5225 1.4241 38 1 1.1223 -2.7519 1.0569 39 1 2.9067 -2.8163 1.0359 40 1 1.9319 -4.3810 1.1889 41 1 1.6639 -8.2442 -3.3519 42 1 1.6511 -7.7198 -5.9908 43 1 1.7890 -5.1170 -6.2676 44 1 3.1183 -0.5234 -1.4024 45 1 1.4684 -0.6447 -2.0841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699843542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:04 Heat of formation + Delta-G solvation = 78.991790 kcal Electronic energy + Delta-G solvation = -30416.519080 eV Core-core repulsion = 26212.576025 eV Total energy + Delta-G solvation = -4203.943055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.36247 -42.80018 -40.31294 -38.09153 -35.17731 -34.37972 -33.64146 -32.85278 -32.67016 -30.88954 -29.51881 -29.22236 -27.14931 -26.23722 -24.80596 -23.65515 -23.24933 -21.87633 -21.73206 -21.44413 -19.73847 -19.14335 -18.58489 -18.20889 -17.96057 -17.20211 -16.45491 -16.19750 -16.15504 -15.69997 -15.02851 -14.67485 -14.47191 -14.38280 -14.09540 -13.86872 -13.25967 -13.21715 -13.15427 -13.11803 -12.80114 -12.64913 -12.30537 -12.28917 -12.01577 -11.88903 -11.81581 -11.44509 -11.03940 -10.91323 -10.76067 -10.66039 -10.54948 -10.38307 -10.19247 -10.14108 -10.04855 -9.57957 -8.91524 -8.75604 -8.47162 -7.24716 -5.77592 -3.13342 0.02110 1.42127 1.65576 1.73092 2.29981 2.69782 3.08018 3.37864 3.38408 3.42339 3.46689 3.75229 3.86964 4.22325 4.33400 4.46950 4.56206 4.57358 4.59285 4.70566 4.79922 4.81252 5.08896 5.18124 5.28288 5.30200 5.40675 5.44567 5.47369 5.54553 5.60120 5.63583 5.73863 5.85998 5.89440 6.01764 6.02860 6.05875 6.16650 6.31589 6.41926 6.57278 6.64861 6.72683 7.36351 7.63146 7.97570 8.02779 8.41270 9.19893 9.92409 10.11397 11.40757 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.003110 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.003064 B = 9000.711499 C =10833.278707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 C 0.175 3.825 4 N -0.754 5.754 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.934 5.934 9 Si 0.879 3.121 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 C -0.120 4.120 14 C 0.092 3.908 15 N -0.607 5.607 16 C 0.600 3.400 17 O -0.511 6.511 18 C -0.231 4.231 19 C 0.024 3.976 20 N -0.356 5.356 21 O 0.122 5.878 22 C 0.112 3.888 23 C 0.019 3.981 24 C -0.147 4.147 25 C -0.229 4.229 26 C 0.001 3.999 27 O -0.111 6.111 28 C 0.122 3.878 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.210 0.790 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.212 0.788 44 H 0.078 0.922 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 -27.313 4.396 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.084 4.084 3 C 0.048 3.952 4 N -0.400 5.400 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.202 1.202 13 C -0.159 4.159 14 C -0.031 4.031 15 N -0.341 5.341 16 C 0.388 3.612 17 O -0.387 6.387 18 C -0.238 4.238 19 C -0.155 4.155 20 N -0.060 5.060 21 O 0.058 5.942 22 C 0.047 3.953 23 C -0.032 4.032 24 C -0.167 4.167 25 C -0.248 4.248 26 C -0.070 4.070 27 O -0.003 6.003 28 C 0.001 3.999 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.226 0.774 41 H 0.177 0.823 42 H 0.174 0.826 43 H 0.228 0.772 44 H 0.096 0.904 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.835 -27.645 4.798 28.070 hybrid contribution -0.704 0.003 -1.372 1.542 sum -1.539 -27.642 3.426 27.896 Atomic orbital electron populations 1.21693 0.93374 1.00820 1.02919 1.22090 0.96435 0.96216 0.93682 1.20560 0.96722 0.87522 0.90446 1.42722 1.64022 1.12808 1.20485 1.19029 1.27434 0.86768 1.04166 0.89166 1.24649 1.00481 0.95878 0.97925 1.69697 1.50218 1.10598 1.27649 0.86623 0.80917 0.79455 0.82055 1.21044 1.21631 1.20168 1.22763 1.02756 0.92215 0.98123 1.22368 1.01046 0.99131 0.80553 1.48223 1.72604 1.06651 1.06639 1.16253 0.77751 0.81633 0.85588 1.90922 1.49495 1.85154 1.13102 1.21515 1.14535 0.94803 0.92953 1.25542 1.00504 0.91459 0.97982 1.73541 1.19656 1.12954 0.99805 1.84930 1.67167 1.32619 1.09459 1.21011 0.98888 0.87006 0.88438 1.17998 1.13201 0.87064 0.84953 1.22028 1.03079 0.97691 0.93877 1.21791 1.10078 0.96095 0.96789 1.24622 1.01381 0.93658 0.87336 1.84526 1.68416 1.33593 1.13731 1.22385 1.02111 0.77421 0.98031 0.93333 0.91931 0.91982 0.94797 0.95183 0.80544 0.93040 0.89531 0.89810 0.91179 0.91116 0.77367 0.82303 0.82553 0.77179 0.90423 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.43 37.16 0.31 -1.48 16 2 C -0.08 -1.15 0.63 -152.20 -0.10 -1.25 16 3 C 0.18 3.11 5.24 -4.04 -0.02 3.09 16 4 N -0.75 -17.28 4.98 -59.91 -0.30 -17.58 16 5 C -0.24 -6.80 10.47 -15.06 -0.16 -6.95 16 6 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 9 Si 0.88 22.29 27.74 -169.99 -4.71 17.58 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 13 C -0.12 -1.17 5.93 -24.74 -0.15 -1.32 16 14 C 0.09 0.85 4.65 -3.06 -0.01 0.83 16 15 N -0.61 -8.03 3.31 -172.00 -0.57 -8.60 16 16 C 0.60 8.95 7.83 -12.78 -0.10 8.85 16 17 O -0.51 -9.31 14.16 -18.28 -0.26 -9.57 16 18 C -0.23 -2.88 6.30 -104.04 -0.66 -3.53 16 19 C 0.02 0.23 10.58 -16.77 -0.18 0.06 16 20 N -0.36 -3.87 11.97 30.86 0.37 -3.50 16 21 O 0.12 1.32 11.19 16.10 0.18 1.50 16 22 C 0.11 1.35 7.41 -35.50 -0.26 1.09 16 23 C 0.02 0.23 7.08 -36.85 -0.26 -0.03 16 24 C -0.15 -1.34 10.86 -39.32 -0.43 -1.76 16 25 C -0.23 -1.83 10.87 -39.88 -0.43 -2.27 16 26 C 0.00 0.01 12.08 29.61 0.36 0.37 16 27 O -0.11 -1.48 7.67 -18.78 -0.14 -1.63 16 28 C 0.12 1.88 5.32 -2.53 -0.01 1.86 16 29 H 0.05 0.59 7.82 -51.93 -0.41 0.19 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.99 7.20 -51.93 -0.37 0.62 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 34 H 0.36 8.24 4.17 -40.82 -0.17 8.07 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 36 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 37 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 38 H 0.07 0.53 6.94 -51.93 -0.36 0.17 16 39 H 0.07 0.52 7.07 -51.93 -0.37 0.15 16 40 H 0.21 1.41 4.91 -52.48 -0.26 1.15 16 41 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.21 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 45 H 0.08 1.45 7.77 -51.93 -0.40 1.05 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -35.13 369.81 -7.00 -42.12 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.72 Total: 4.98 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.19 Total: -2.34 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.28 Total: -58.22 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.22 Total: -9.69 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.13 -7.00 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699843542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.115 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds